RLG00000006712

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
9873770 .. 9876493
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006712

Sequence Viewer

Length: 1467 bp
ATGGAGGAGGGATTGTTATTGCCAAGAGGCAAAGATCAAGTAAAGCAAAGAAAAGGGTCAAGTAGTACTAGTAGTCTAACATGGTTTTCATTCTTCGAAGAAGTGAAGAGGTTGGGATGCATAGCAGGACCTATGGTTGCTGTGGTCCTATCCCAGTACTTGTTGCAGGTCGTTTCAACGATGATGGTTGGTCATCTTGGTGAGCTAGCTCTCTCTAGCACTGCCATAGCCACCTCTCTAGCTACTGTCACTGGCTTTAGTCTTTTTTTAGGAATGGCCAGTGCACTGGAAACCTTATGTGGACAAGCTTATGGAGCTGAGCAATATCAAAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGTCTTCCTATATCTTTCATATGGTTTTATGTGGAGGACTTGCTGATTTTGATTGGTCAAGATCCTTCAATTTCTCATCAAGCTGGCAAATTCATAATTTGGCTCATTCCGGCTCTTTTTGCTTATGCAACTCTTCAACCGCTGAATAGATACTTCCAGACACAAAGTTTAATACTTCCTATGCTTCTGAGCTCTTGTGCAACCCTTTTGTTCCACATTCCTCTCTGTTGGGTCCTAGTATTCAAATCTGGACTGGATAACCTTGGAGGAGCATTGGCAATGAGTATTTCGTACTGGTTGAATGCGATTTTACTCGGATTATACATGAAGTTCTCTTCTACATGTTCAAAAACTAGAGCTCCAATTTCTAAGGAGGTATTCCAAGGAATTGGAGAGTTCTTTCAATTTGCAGTCCCTTCTGCAATTATGTTATGCCTTGAGTGGTGGTCATTTGAGCTGCTCATCTTGCTGTGTGGGCTTTTACCAAATCCTGCTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGAGCATTTCGACACTCTATTCCATACCCTATGGATTTGGAGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCTGAAGGTGCTCGTATAGCTACTTGTGCTGCCATGTTTCTTACAGTCGCAGAGACAAGTACAGTAGCCACAACCCTCTTTTGCTGCAGGCATGTATTTGGTTACCTCTTCAGCAATGAGGAAGAAGTCGTCAATTATGTCAGAACAATGGCTCCTCTTGTTTGCCTCTCTGTCATACTAGACAGCTTCCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATTTATGTGGGATTCCAGTTGCTGCTACATTAGCTTTCTGGGTTCAACTAAGAGGAAGGGGTCTTTGGATTGGAATACAAGTTGGAGCTTTTGTGCAAACCACTCTGCTTGCTATTGTAACAACTTGTACAAACTGGGAAAAGCAGGCAAGTAAGGCAAGGGAGCGGATATTTGAGGGAAGCACTCTAGTTGAGAATGGATTGTGCCACTAA

Protein Analysis

489

Amino Acids

53.13

Weight (kDa)

6.32

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 44 - 204 2e-33 MatE
MatE PF01554 265 - 427 2.4e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AccBSI CCGCTC 2 cut(s) 947, 1420
AciI CCGC 3 cut(s) 518, 947, 1420
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 3 cut(s) 867, 1014, 1084
AfaI GTAC 6 cut(s) 67, 158, 671, 958, 1051, 1384
AflIII ACRYGT 1 cut(s) 719
AhlI ACTAGT 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 1303, 1335
AloI GAACNNNNNNTCC 2 cut(s) 1126, 1158
Alw21I GWGCWC 4 cut(s) 286, 572, 739, 1003
Alw26I GTCTC 2 cut(s) 905, 1037
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 1277
AoxI GGCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 6 cut(s) 835, 950, 1019, 1074, 1219, 1277
ApoI RAATTY 1 cut(s) 467
AspS9I GGNCC 4 cut(s) 128, 145, 610, 1186
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 4 cut(s) 128, 145, 610, 1186
BaeGI GKGCMC 1 cut(s) 286
BalI TGGCCA 1 cut(s) 278
BanII GRGCYC 2 cut(s) 572, 739
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 4 cut(s) 286, 572, 739, 1003
BbvI GCAGC 6 cut(s) 822, 962, 1006, 1061, 1231, 1264
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 905, 1037
BcuI ACTAGT 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 1075
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 7 cut(s) 836, 948, 951, 1020, 1075, 1220, 1278
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 7 cut(s) 837, 949, 952, 1021, 1076, 1221, 1279
BmcAI AGTACT 3 cut(s) 67, 158, 958
Bme18I GGWCC 4 cut(s) 128, 145, 610, 1186
BmgT120I GGNCC 4 cut(s) 128, 145, 610, 1186
BmiI GGNNCC 3 cut(s) 611, 1143, 1187
BmrI ACTGGG 2 cut(s) 148, 1399
BmsI GCATC 1 cut(s) 107
BmtI GCTAGC 1 cut(s) 209
BmuI ACTGGG 2 cut(s) 148, 1399
BpiI GAAGAC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 887
Bpu1102I GCTNAGC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 836
BsaJI CCNNGG 4 cut(s) 640, 760, 1180, 1243
BsaXI ACNNNNNCTCC 7 cut(s) 29, 721, 751, 1126, 1156, 1332, 1362
Bse1I ACTGG 8 cut(s) 154, 256, 279, 291, 636, 677, 1271, 1394
Bse3DI GCAATG 2 cut(s) 663, 1111
BseDI CCNNGG 4 cut(s) 640, 760, 1180, 1243
BseGI GGATG 2 cut(s) 122, 1214
BseMI GCAATG 2 cut(s) 663, 1111
BseMII CTCAG 2 cut(s) 309, 557
BseNI ACTGG 8 cut(s) 154, 256, 279, 291, 636, 677, 1271, 1394
BseRI GAGGAG 3 cut(s) 20, 660, 1134
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 6 cut(s) 822, 962, 1006, 1061, 1231, 1264
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 4 cut(s) 286, 572, 739, 1003
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 776
BsmAI GTCTC 2 cut(s) 905, 1037
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 4 cut(s) 286, 572, 739, 1003
Bsp1407I TGTACA 1 cut(s) 1382
Bsp143I GATC 2 cut(s) 34, 439
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 3 cut(s) 518, 947, 1420
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 310, 558
BspLI GGNNCC 3 cut(s) 611, 1143, 1187
BspMAI CTGCAG 1 cut(s) 1079
BspMI ACCTGC 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 434
BspT104I TTCGAA 1 cut(s) 96
BsrBI CCGCTC 2 cut(s) 947, 1420
BsrDI GCAATG 2 cut(s) 663, 1111
BsrGI TGTACA 1 cut(s) 1382
BsrI ACTGG 8 cut(s) 154, 256, 279, 291, 636, 677, 1271, 1394
BssECI CCNNGG 4 cut(s) 640, 760, 1180, 1243
BssMI GATC 2 cut(s) 34, 439
BssT1I CCWWGG 4 cut(s) 640, 760, 1180, 1243
Bst4CI ACNGT 3 cut(s) 247, 1036, 1054
Bst6I CTCTTC 4 cut(s) 101, 516, 718, 1103
BstAUI TGTACA 1 cut(s) 1382
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 6 cut(s) 207, 463, 985, 1079, 1365, 1401
BstDEI CTNAG 5 cut(s) 318, 373, 566, 747, 1304
BstEII GGTNACC 1 cut(s) 1091
BstF5I GGATG 2 cut(s) 122, 1214
BstKTI GATC 2 cut(s) 37, 442
BstMAI GTCTC 2 cut(s) 905, 1037
BstMBI GATC 2 cut(s) 34, 439
BstMWI GCNNNNNNNGC 8 cut(s) 314, 497, 844, 853, 1007, 1016, 1286, 1409
BstNSI RCATGY 2 cut(s) 723, 1085
BstPI GGTNACC 1 cut(s) 1091
BstSFI CTRYAG 1 cut(s) 1075
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 6 cut(s) 822, 962, 1006, 1061, 1231, 1264
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 2 cut(s) 286, 767
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 122, 1214
BtsI GCAGTG 2 cut(s) 219, 351
BtsIMutI CAGTG 6 cut(s) 219, 249, 284, 286, 351, 891
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 6 cut(s) 207, 463, 985, 1079, 1365, 1401
CaiI CAGNNNCTG 1 cut(s) 1277
Cfr13I GGNCC 4 cut(s) 128, 145, 610, 1186
Csp6I GTAC 6 cut(s) 66, 157, 670, 957, 1050, 1383
CspCI CAANNNNNGTGG 2 cut(s) 1345, 1380
CviAII CATG 5 cut(s) 81, 703, 720, 1024, 1082
CviQI GTAC 6 cut(s) 66, 157, 670, 957, 1050, 1383
DdeI CTNAG 5 cut(s) 318, 373, 566, 747, 1304
DpnI GATC 2 cut(s) 36, 441
DpnII GATC 2 cut(s) 34, 439
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 4 cut(s) 101, 516, 718, 1103
EarI CTCTTC 4 cut(s) 101, 516, 718, 1103
Ecl136II GAGCTC 2 cut(s) 570, 737
Eco130I CCWWGG 4 cut(s) 640, 760, 1180, 1243
Eco24I GRGCYC 2 cut(s) 572, 739
Eco47I GGWCC 4 cut(s) 128, 145, 610, 1186
Eco53kI GAGCTC 2 cut(s) 570, 737
Eco57I CTGAAG 3 cut(s) 867, 1014, 1084
Eco91I GGTNACC 1 cut(s) 1091
EcoICRI GAGCTC 2 cut(s) 570, 737
EcoO109I RGGNCCY 3 cut(s) 128, 610, 1186
EcoO65I GGTNACC 1 cut(s) 1091
EcoT14I CCWWGG 4 cut(s) 640, 760, 1180, 1243
EcoT22I ATGCAT 1 cut(s) 122
EcoT38I GRGCYC 2 cut(s) 572, 739
ErhI CCWWGG 4 cut(s) 640, 760, 1180, 1243
FaeI CATG 5 cut(s) 84, 706, 723, 1027, 1085
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 1 cut(s) 776
FatI CATG 5 cut(s) 80, 702, 719, 1023, 1081
FauNDI CATATG 1 cut(s) 398
Fnu4HI GCNGC 7 cut(s) 836, 948, 951, 1020, 1075, 1220, 1278
FokI GGATG 2 cut(s) 129, 1221
FriOI GRGCYC 2 cut(s) 572, 739
Fsp4HI GCNGC 7 cut(s) 836, 948, 951, 1020, 1075, 1220, 1278
GluI GCNGC 7 cut(s) 836, 948, 951, 1020, 1075, 1220, 1278
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 488
Hin1II CATG 5 cut(s) 84, 706, 723, 1027, 1085
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 1 cut(s) 1267
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 284, 302
Hpy188I TCNGA 3 cut(s) 567, 695, 1133
Hpy188III TCNNGA 5 cut(s) 437, 535, 627, 875, 904
Hpy8I GTNNAC 2 cut(s) 284, 302
HpyAV CCTTC 4 cut(s) 453, 804, 989, 1305
HpyCH4III ACNGT 3 cut(s) 247, 1036, 1054
HpyF10VI GCNNNNNNNGC 8 cut(s) 314, 497, 844, 853, 1007, 1016, 1286, 1409
HpyF3I CTNAG 5 cut(s) 318, 373, 566, 747, 1304
Hsp92II CATG 5 cut(s) 84, 706, 723, 1027, 1085
Kzo9I GATC 2 cut(s) 34, 439
LmnI GCTCC 9 cut(s) 314, 647, 742, 944, 980, 1147, 1247, 1340, 1417
Lsp1109I GCAGC 6 cut(s) 822, 962, 1006, 1061, 1231, 1264
LweI GCATC 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 247, 1091, 1372
MalI GATC 2 cut(s) 36, 441
MbiI CCGCTC 2 cut(s) 947, 1420
MboI GATC 2 cut(s) 34, 439
MboII GAAGA 8 cut(s) 85, 110, 118, 374, 503, 705, 1090, 1124
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 4 cut(s) 286, 572, 739, 1003
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 8 cut(s) 447, 467, 474, 741, 765, 782, 801, 1123
MluNI TGGCCA 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 1318
Mox20I TGGCCA 1 cut(s) 278
Mph1103I ATGCAT 1 cut(s) 122
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 685
MwoI GCNNNNNNNGC 8 cut(s) 314, 497, 844, 853, 1007, 1016, 1286, 1409
NdeI CATATG 1 cut(s) 398
NdeII GATC 2 cut(s) 34, 439
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 5 cut(s) 84, 706, 723, 1027, 1085
NlaIV GGNNCC 3 cut(s) 611, 1143, 1187
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 2 cut(s) 723, 1085
NspV TTCGAA 1 cut(s) 96
PciI ACATGT 1 cut(s) 719
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 1 cut(s) 1267
PkrI GCNGC 7 cut(s) 837, 949, 952, 1021, 1076, 1221, 1279
PpuMI RGGWCCY 3 cut(s) 128, 610, 1186
PscI ACATGT 1 cut(s) 719
Psp124BI GAGCTC 2 cut(s) 572, 739
Psp5II RGGWCCY 3 cut(s) 128, 610, 1186
PspEI GGTNACC 1 cut(s) 1091
PspN4I GGNNCC 3 cut(s) 611, 1143, 1187
PspPI GGNCC 4 cut(s) 128, 145, 610, 1186
PspPPI RGGWCCY 3 cut(s) 128, 610, 1186
PstI CTGCAG 1 cut(s) 1079
PstNI CAGNNNCTG 1 cut(s) 1277
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 6 cut(s) 67, 158, 671, 958, 1051, 1384
RsaNI GTAC 6 cut(s) 66, 157, 670, 957, 1050, 1383
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 2 cut(s) 572, 739
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 7 cut(s) 836, 948, 951, 1020, 1075, 1220, 1278
Sau3AI GATC 2 cut(s) 34, 439
Sau96I GGNCC 4 cut(s) 128, 145, 610, 1186
ScaI AGTACT 3 cut(s) 67, 158, 958
SduI GDGCHC 4 cut(s) 286, 572, 739, 1003
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 1075
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 4 cut(s) 128, 145, 610, 1186
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SpeI ACTAGT 1 cut(s) 68
Sse9I AATT 8 cut(s) 447, 467, 474, 741, 765, 782, 801, 1123
SsiI CCGC 3 cut(s) 518, 947, 1420
SstI GAGCTC 2 cut(s) 572, 739
StyI CCWWGG 4 cut(s) 640, 760, 1180, 1243
TaaI ACNGT 3 cut(s) 247, 1036, 1054
TaqI TCGA 2 cut(s) 96, 914
TasI AATT 8 cut(s) 447, 467, 474, 741, 765, 782, 801, 1123
TatI WGTACW 5 cut(s) 65, 156, 956, 1049, 1382
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 1 cut(s) 1267
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 6 cut(s) 226, 256, 286, 291, 358, 891
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 6 cut(s) 835, 950, 1019, 1074, 1219, 1277
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 5 cut(s) 78, 385, 460, 719, 987
TspRI CASTG 6 cut(s) 226, 256, 286, 291, 358, 891
VneI GTGCAC 1 cut(s) 282
VpaK11BI GGWCC 4 cut(s) 128, 145, 610, 1186
XapI RAATTY 1 cut(s) 467
XceI RCATGY 2 cut(s) 723, 1085
ZrmI AGTACT 3 cut(s) 67, 158, 958
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.