Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

2458918 .. 2461311

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTACTGGTTTTTGTATGCATCTCTTTCTTACAAGTTACAACTAAGTGGATTTTGTAACTTGCTGTTTGAACAGTTGGGAATGGCTAGTGCATTGGAAACTCTGTGTGGTCAAGCATATGGAGCAGAACAATATCAGAAACTTGGACTTCACACTTACACTGCTATATTTTCTCTCAACTTAGTCTGTCTTCCTTTATCTTTGATATGGATTTATATGGAGAAGTTACTGATTTTCATGGGTCAAGACCCTGTAATTTCCCGTGAAGCCGGCAAGTTCACAATCTGGCTTATTCCCGCGCTTTTCGCTTATGCCACTATTCAGCCACTCATCAGATACTTTCAGACACAAAGTTTAATAATTCCTATGCTCATAAGCTCCTGTGCGACCCTTCTGTTCCATATTCCTCTGTGTTGGCTTCTAGTATTCAAGTCTGGACTCAACAACCTTGGAGGAGCATTAGCAATCAGTATTTCTTATTGGGTGAATGCGATTCTACTTGGATTGTACATGAAGTTTTCTGCTACCTGTTCTAAAACCCGAGCTCCAATTTCTATGGAGGTATTCCATGGAATCGGAGAGTTCTTTCGCTTTGCCATCCCTTCTGCAATAATGATATGCCTTCAGTGGTGGTCATATGAGCTGCTTATCTTGCTGTCTGGACTTTTATCAAATCCGGCTTTTGAAACTTCAGTTCTGTCTGTATGTCTGCAGACGATTTCGACACTCTATGCAATACCTTATGGGTTTGCTGCTGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGTAACCCACAAGGTGCTCGAATAGCTACTTTTTCTGTCATGTTTCTTGCAGTCGCAGAGATAAGTATAATAACCACGACCCTTTTTGCCTGCCGGAATGTATTTGGTTACACTTTTAGCAATGAGAAAGAAGTCATCGATTACGTCACAACCATGGCTCCTCTAGTTTGCCTGGCCGCTGCCCTAGACAGTTTGCAAGGGGTCCTTTCAGGTATTGCTAGAGGAACCGGGTGGCAGCATATAGGGGCTTACATAAACCTCGGAGCTTGTTATCTTTGTGGGATTCCAGTTGCAGCCACATTGGCTTTCTGGATACAGCTGAGAGGAAGGGGCCTTTGGATTGGAATACAAGTTGGTGCTTTTGTGCAAACCGTGATGCTCTCTTTTGTAACAATTAGTACAAATTGGGAAAAGCAGGCAACTAAGGCAAGGGAGAGGATATTTGAGGGAAGCCCCCCACAAGTTAATGACTTGTGTGACAAGGCAGAGAGTAATGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

432

Amino Acids

47.53

Weight (kDa)

6.86

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	26 - 140	5.2e-21	MatE
MatE	PF01554	201 - 363	7.4e-27	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	2 cut(s)	297, 969
AcoI	YGGCCR	1 cut(s)	966
AcuI	CTGAAG	2 cut(s)	608, 675
AdeI	CACNNNGTG	1 cut(s)	806
AfaI	GTAC	4 cut(s)	5, 509, 766, 1192
AgsI	TTSAA	4 cut(s)	71, 430, 686, 777
AjnI	CCWGG	1 cut(s)	963
AjuI	GAANNNNNNNTTGG	2 cut(s)	1111, 1143
AluBI	AGCT	7 cut(s)	378, 545, 643, 791, 818, 1058, 1111
AluI	AGCT	7 cut(s)	378, 545, 643, 791, 818, 1058, 1111
Alw21I	GWGCWC	2 cut(s)	547, 811
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	2 cut(s)	966, 1123
ApeKI	GCWGC	7 cut(s)	643, 752, 755, 758, 971, 1027, 1085
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	994, 1123
AsuC2I	CCSGG	1 cut(s)	1021
AsuHPI	GGTGA	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	547, 811
BbvI	GCAGC	7 cut(s)	630, 739, 742, 770, 958, 1039, 1097
BccI	CCATC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	965
BciVI	GTATCC	1 cut(s)	1098
BcnI	CCSGG	1 cut(s)	1021
BfaI	CTAG	7 cut(s)	87, 422, 768, 785, 956, 977, 1011
BfmI	CTRYAG	2 cut(s)	710, 756
BfuI	GTATCC	1 cut(s)	1098
BglI	GCCNNNNNGGC	1 cut(s)	1094
BisI	GCNGC	8 cut(s)	644, 753, 756, 759, 969, 972, 1028, 1086
BlsI	GCNGC	8 cut(s)	645, 754, 757, 760, 970, 973, 1029, 1087
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	2 cut(s)	965, 1021
Bme18I	GGWCC	1 cut(s)	994
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	994, 1123
BmiI	GGNNCC	4 cut(s)	951, 995, 1018, 1124
BmrFI	CCNGG	2 cut(s)	965, 1021
BmsI	GCATC	2 cut(s)	29, 1158
BpiI	GAAGAC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	1021
Bsa29I	ATCGAT	1 cut(s)	930
BsaJI	CCNNGG	4 cut(s)	448, 568, 945, 1051
BsaXI	ACNNNNNCTCC	4 cut(s)	529, 559, 934, 964
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	11, 1079
Bse3DI	GCAATG	1 cut(s)	919
BseBI	CCWGG	1 cut(s)	965
BseCI	ATCGAT	1 cut(s)	930
BseDI	CCNNGG	4 cut(s)	448, 568, 945, 1051
BseGI	GGATG	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	1 cut(s)	1103
BseNI	ACTGG	2 cut(s)	11, 1079
BseRI	GAGGAG	2 cut(s)	468, 942
BseXI	GCAGC	7 cut(s)	630, 739, 742, 770, 958, 1039, 1097
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	968, 1125
BshVI	ATCGAT	1 cut(s)	930
BsiHKAI	GWGCWC	2 cut(s)	547, 811
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	4 cut(s)	270, 677, 886, 1020
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	968, 1125
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	547, 811
Bsp1407I	TGTACA	1 cut(s)	507
Bsp19I	CCATGG	2 cut(s)	568, 945
BspACI	CCGC	2 cut(s)	297, 969
BspANI	GGCC	2 cut(s)	968, 1125
BspCNI	CTCAG	1 cut(s)	1104
BspDI	ATCGAT	1 cut(s)	930
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	951, 995, 1018, 1124
BspMAI	CTGCAG	2 cut(s)	714, 760
BsrDI	GCAATG	1 cut(s)	919
BsrFI	RCCGGY	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	11, 1079
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	448, 568, 945, 1051
BssT1I	CCWWGG	3 cut(s)	448, 568, 945
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	3 cut(s)	75, 983, 1165
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	271, 883, 1209
BstDEI	CTNAG	4 cut(s)	44, 181, 1112, 1215
BstDSI	CCRYGG	2 cut(s)	568, 945
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 305, 652, 758, 815, 1094, 1217
BstNI	CCWGG	1 cut(s)	965
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	963, 1019
BstSFI	CTRYAG	2 cut(s)	710, 756
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	7 cut(s)	630, 739, 742, 770, 958, 1039, 1097
BstV2I	GAAGAC	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	930
BsuI	GTATCC	1 cut(s)	1098
BsuRI	GGCC	2 cut(s)	968, 1125
BsuTUI	ATCGAT	1 cut(s)	930
BtgI	CCRYGG	2 cut(s)	568, 945
BtsCI	GGATG	1 cut(s)	597
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 632
Cac8I	GCNNGC	3 cut(s)	271, 883, 1209
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	994, 1123
ClaI	ATCGAT	1 cut(s)	930
Csp6I	GTAC	4 cut(s)	4, 508, 765, 1191
CviAII	CATG	5 cut(s)	238, 511, 569, 832, 946
CviQI	GTAC	4 cut(s)	4, 508, 765, 1191
DdeI	CTNAG	4 cut(s)	44, 181, 1112, 1215
DraIII	CACNNNGTG	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	966
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	3 cut(s)	448, 568, 945
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	608, 675
Eco88I	CYCGRG	1 cut(s)	540
Eco91I	GGTNACC	1 cut(s)	794
EcoICRI	GAGCTC	1 cut(s)	545
EcoO109I	RGGNCCY	2 cut(s)	994, 1123
EcoO65I	GGTNACC	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	963
EcoT14I	CCWWGG	3 cut(s)	448, 568, 945
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	3 cut(s)	448, 568, 945
FaeI	CATG	5 cut(s)	241, 514, 572, 835, 949
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FatI	CATG	5 cut(s)	237, 510, 568, 831, 945
FauI	CCCGC	1 cut(s)	304
FauNDI	CATATG	2 cut(s)	118, 637
Fnu4HI	GCNGC	8 cut(s)	644, 753, 756, 759, 969, 972, 1028, 1086
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	8 cut(s)	644, 753, 756, 759, 969, 972, 1028, 1086
FspBI	CTAG	7 cut(s)	87, 422, 768, 785, 956, 977, 1011
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	8 cut(s)	644, 753, 756, 759, 969, 972, 1028, 1086
HaeIII	GGCC	2 cut(s)	968, 1125
HapII	CCGG	4 cut(s)	270, 677, 886, 1020
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	5 cut(s)	241, 514, 572, 835, 949
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	4 cut(s)	438, 493, 573, 1075
HpaII	CCGG	4 cut(s)	270, 677, 886, 1020
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	5 cut(s)	138, 335, 345, 578, 1055
Hpy188III	TCNNGA	4 cut(s)	245, 435, 660, 1102
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	4 cut(s)	401, 612, 632, 1113
HpyCH4III	ACNGT	3 cut(s)	75, 983, 1165
HpyCH4IV	ACGT	1 cut(s)	936
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 305, 652, 758, 815, 1094, 1217
HpyF3I	CTNAG	4 cut(s)	44, 181, 1112, 1215
HpySE526I	ACGT	1 cut(s)	936
Hsp92II	CATG	5 cut(s)	241, 514, 572, 835, 949
HspAI	GCGC	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
LmnI	GCTCC	7 cut(s)	122, 383, 455, 550, 788, 955, 1055
Lsp1109I	GCAGC	7 cut(s)	630, 739, 742, 770, 958, 1039, 1097
LweI	GCATC	2 cut(s)	29, 1158
MaeI	CTAG	7 cut(s)	87, 422, 768, 785, 956, 977, 1011
MaeII	ACGT	1 cut(s)	936
MaeIII	GTNAC	8 cut(s)	36, 56, 225, 794, 899, 937, 1180, 1268
MboII	GAAGA	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	547, 811
MluCI	AATT	5 cut(s)	255, 360, 549, 1185, 1195
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	9 cut(s)	417, 446, 553, 963, 1007, 1061, 1109, 1221, 1231
Mph1103I	ATGCAT	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	2 cut(s)	356, 1257
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	2 cut(s)	971, 1111
MspI	CCGG	4 cut(s)	270, 677, 886, 1020
MspR9I	CCNGG	2 cut(s)	965, 1021
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	965
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	7 cut(s)	122, 305, 652, 758, 815, 1094, 1217
NaeI	GCCGGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	1021
NcoI	CCATGG	2 cut(s)	568, 945
NdeI	CATATG	2 cut(s)	118, 637
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	5 cut(s)	241, 514, 572, 835, 949
NlaIV	GGNNCC	4 cut(s)	951, 995, 1018, 1124
NmuCI	GTSAC	2 cut(s)	937, 1268
NsiI	ATGCAT	1 cut(s)	22
PctI	GAATGC	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	493, 573, 1075
PkrI	GCNGC	8 cut(s)	645, 754, 757, 760, 970, 973, 1029, 1087
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	994
Psp124BI	GAGCTC	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	994
Psp6I	CCWGG	1 cut(s)	963
PspEI	GGTNACC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	4 cut(s)	951, 995, 1018, 1124
PspPI	GGNCC	2 cut(s)	994, 1123
PspPPI	RGGWCCY	1 cut(s)	994
PstI	CTGCAG	2 cut(s)	714, 760
PvuII	CAGCTG	1 cut(s)	1111
RsaI	GTAC	4 cut(s)	5, 509, 766, 1192
RsaNI	GTAC	4 cut(s)	4, 508, 765, 1191
RseI	CAYNNNNRTG	1 cut(s)	944
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	356, 1257
SatI	GCNGC	8 cut(s)	644, 753, 756, 759, 969, 972, 1028, 1086
Sau96I	GGNCC	2 cut(s)	994, 1123
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	965, 1021
SduI	GDGCHC	2 cut(s)	547, 811
SfaNI	GCATC	2 cut(s)	29, 1158
SfcI	CTRYAG	2 cut(s)	710, 756
SinI	GGWCC	1 cut(s)	994
SmiMI	CAYNNNNRTG	1 cut(s)	944
Sse9I	AATT	5 cut(s)	255, 360, 549, 1185, 1195
SsiI	CCGC	2 cut(s)	297, 969
SspMI	CTAG	7 cut(s)	87, 422, 768, 785, 956, 977, 1011
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	2 cut(s)	963, 1019
StyI	CCWWGG	3 cut(s)	448, 568, 945
TaaI	ACNGT	3 cut(s)	75, 983, 1165
TaiI	ACGT	1 cut(s)	939
TaqI	TCGA	3 cut(s)	722, 811, 930
TasI	AATT	5 cut(s)	255, 360, 549, 1185, 1195
TatI	WGTACW	4 cut(s)	3, 507, 764, 1190
TauI	GCSGC	1 cut(s)	971
TfiI	GAWTC	3 cut(s)	493, 573, 1075
Tru1I	TTAA	2 cut(s)	356, 1257
Tru9I	TTAA	2 cut(s)	356, 1257
TscAI	CASTG	2 cut(s)	166, 632
TseFI	GTSAC	2 cut(s)	937, 1268
TseI	GCWGC	7 cut(s)	643, 752, 755, 758, 971, 1027, 1085
Tsp45I	GTSAC	2 cut(s)	937, 1268
TspDTI	ATGAA	3 cut(s)	226, 527, 795
TspRI	CASTG	2 cut(s)	166, 632
VpaK11BI	GGWCC	1 cut(s)	994
XspI	CTAG	7 cut(s)	87, 422, 768, 785, 956, 977, 1011
ZrmI	AGTACT	1 cut(s)	766
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.