FvH4_4g26360

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27768584 .. 27771800
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26360.t1

Sequence Viewer

Length: 1449 bp
ATGGAGGAGGGTTTGTTATTGCCAAGAGGCAAAGAAGAAGAAGAAGAGCAAAGAAAAGAGTCATGGGGTTTGTTTTTCGAAGAAGTCAAGAGGTTGGGTTGCTTAGCAGGACCTATGGTTGCTGTGTTGTTATCACAGTACATGGTGCAGGTTGTTTCCATGATGATGGTTGGTCACCTCGGCGAGCTTGCTCTCTCCAGCACTGCCTTGTCTATATCGTTTTCGGGGGTCACCGGCTTTAGTCTTCTTCTAGGAATGGCCAGTGCACTTGAAACTTTAAGTGGGCAAGCGTATGGTGCTGAGCAATATGAGAAAGTTGGACTTCAAACCTACACTGCCATAGTTTCTCTCACCGTAGTTTGTCTTCCTTTGTCTTTAATATGGATATATATAGATGATATACTGATGTTCATGGGTCAAGACCCTGAAATCTCACGTGAAGCTGGCAAATTCACACTATGGCTTCTTCCTGCTTTGTTTTCTTATGCAACTCTCCAACCACTCAATAGATACTTTCAGACTCAAAGTTTAATAATTCCTATGCTCCTGAGCTCTTTGGCGACTATTTTGTTCCATATTCCTCTCTGTTGGGCTCTAGTATTCAAGTCTGGACTGGCTAGCCTTGGAGGGGCATTAGCAATGAGTATTTCCTTCTGGTTCAATGCGATTATACTTGGATTGTTCATGAAGTTTTCTTCTGCCTGTTCCAAAACCAGAGTTCCAATTTCTATGGAGCTATTCTATGGAATGAGAGAGTTCTTTCGCTTTGCCATCCCTTCCGCTGTGATGATATGCCTTGAGTGGTGGTCTTTTGAGCTGCTAATCTTGCTGTCCGGGCTTTTGCCAAACCCAGTTCTTGAAACTTCAGTTCTGTCTGTATGTCTCCAGACCATTGCAACACTCTATTCAATACCGTATGGGTTTGGTGCTGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCAAAAGCTGCTCGTATTGCCACACATGCTGCGATGTTTCTTGCACTCACAGAGGCAACTATAATAACCACAATCCTCTTTGCCTGCCGCAATGTATTTGGCTACACTTTTAGTAACGCGAGAGATGTCATTGATTACGTCACAACCATGGCTCCTCTTGTTTGTCTATCTGTTTTACTAGACAGTTTTCAAGGGGTTCTTTCAGGCATTTCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTCTATTTATGTGGGATTCCAGTTGCTGCTACATTAGCTTTCTGGGTACAACTAAGGGGAAGGGGTCTTTGGATTGGAATACAAGTTGGAGCTTTGGTGCAAACCACTCTGCTTGCTATTGTAGCAACTCGTACAAACTGGGAAAAACAGGCGAGTAAGGCAAGGGAGAGGATATTTGAGGCAAGCGATGAAGAAGCTGAAGGATTGTTGCACTAA

Protein Analysis

483

Amino Acids

52.79

Weight (kDa)

5.42

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 38 - 197 7e-32 MatE
MatE PF01554 259 - 421 3.6e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccII CGCG 1 cut(s) 1091
AciI CCGC 2 cut(s) 780, 1060
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 849
AcvI CACGTG 1 cut(s) 437
AfaI GTAC 4 cut(s) 140, 940, 1281, 1366
AfiI CCNNNNNNNGG 1 cut(s) 628
AgsI TTSAA 8 cut(s) 272, 326, 604, 661, 860, 909, 951, 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 1285, 1317
Alw21I GWGCWC 2 cut(s) 268, 554
Alw26I GTCTC 1 cut(s) 887
Alw44I GTGCAC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 7 cut(s) 817, 929, 932, 980, 1001, 1201, 1259
ApoI RAATTY 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 3 cut(s) 167, 223, 343
AsuII TTCGAA 1 cut(s) 78
AsuNHI GCTAGC 1 cut(s) 617
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 260
BanII GRGCYC 2 cut(s) 554, 595
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbrPI CACGTG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 236, 356
Bbv12I GWGCWC 2 cut(s) 268, 554
BbvI GCAGC 7 cut(s) 804, 916, 944, 967, 988, 1213, 1246
BccI CCATC 2 cut(s) 160, 779
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 887
BfaI CTAG 7 cut(s) 251, 596, 618, 942, 959, 1151, 1185
BfmI CTRYAG 1 cut(s) 930
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 8 cut(s) 818, 930, 933, 981, 1002, 1060, 1202, 1260
BlpI GCTNAGC 2 cut(s) 103, 300
BlsI GCNGC 8 cut(s) 819, 931, 934, 982, 1003, 1061, 1203, 1261
BmcAI AGTACT 1 cut(s) 940
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 1125
BmrFI CCNGG 1 cut(s) 835
BmrI ACTGGG 2 cut(s) 845, 1381
BmtI GCTAGC 1 cut(s) 621
BmuI ACTGGG 2 cut(s) 845, 1381
BpiI GAAGAC 2 cut(s) 236, 356
BpmI CTGGAG 2 cut(s) 181, 869
Bpu10I CCTNAGC 1 cut(s) 548
Bpu1102I GCTNAGC 2 cut(s) 103, 300
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 835
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 178, 622, 1119, 1225
BsaXI ACNNNNNCTCC 5 cut(s) 29, 1108, 1138, 1314, 1344
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 5 cut(s) 261, 618, 851, 1253, 1376
Bse3DI GCAATG 3 cut(s) 645, 891, 1069
BseDI CCNNGG 4 cut(s) 178, 622, 1119, 1225
BseGI GGATG 2 cut(s) 771, 1196
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMI GCAATG 3 cut(s) 645, 891, 1069
BseMII CTCAG 2 cut(s) 291, 539
BseNI ACTGG 5 cut(s) 261, 618, 851, 1253, 1376
BseRI GAGGAG 2 cut(s) 20, 1116
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 7 cut(s) 804, 916, 944, 967, 988, 1213, 1246
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 1091
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 268, 554
BsiSI CCGG 2 cut(s) 234, 834
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 1 cut(s) 887
BsmI GAATGC 1 cut(s) 1232
BsnI GGCC 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 268, 554, 595
Bsp1720I GCTNAGC 2 cut(s) 103, 300
Bsp19I CCATGG 1 cut(s) 1119
BspACI CCGC 2 cut(s) 780, 1060
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 292, 540
BspFNI CGCG 1 cut(s) 1091
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 1125
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 621
BspQI GCTCTTC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 78
BsrDI GCAATG 3 cut(s) 645, 891, 1069
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 5 cut(s) 261, 618, 851, 1253, 1376
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 178, 622, 1119, 1225
BssT1I CCWWGG 3 cut(s) 622, 1119, 1225
Bst4CI ACNGT 4 cut(s) 138, 355, 915, 1157
Bst6I CTCTTC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 9 cut(s) 185, 189, 288, 445, 619, 967, 1057, 1347, 1417
BstDEI CTNAG 4 cut(s) 103, 300, 548, 1286
BstDSI CCRYGG 1 cut(s) 1119
BstEII GGTNACC 2 cut(s) 173, 229
BstF5I GGATG 2 cut(s) 771, 1196
BstFNI CGCG 1 cut(s) 1091
BstMAI GTCTC 1 cut(s) 887
BstMWI GCNNNNNNNGC 8 cut(s) 296, 826, 835, 989, 998, 1268, 1355, 1391
BstNSI RCATGY 1 cut(s) 1001
BstPI GGTNACC 2 cut(s) 173, 229
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 1 cut(s) 1091
BstV1I GCAGC 7 cut(s) 804, 916, 944, 967, 988, 1213, 1246
BstV2I GAAGAC 2 cut(s) 236, 356
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 1119
BtgZI GCGATG 2 cut(s) 1019, 1434
BtsCI GGATG 2 cut(s) 771, 1196
BtsI GCAGTG 2 cut(s) 201, 333
BtsIMutI CAGTG 3 cut(s) 201, 268, 333
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 9 cut(s) 185, 189, 288, 445, 619, 967, 1057, 1347, 1417
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 139, 939, 1280, 1365
CspCI CAANNNNNGTGG 2 cut(s) 1327, 1362
CviAII CATG 7 cut(s) 63, 142, 160, 412, 685, 998, 1120
CviQI GTAC 4 cut(s) 139, 939, 1280, 1365
DdeI CTNAG 4 cut(s) 103, 300, 548, 1286
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 552
Eco130I CCWWGG 3 cut(s) 622, 1119, 1225
Eco24I GRGCYC 2 cut(s) 554, 595
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 849
Eco72I CACGTG 1 cut(s) 437
Eco91I GGTNACC 2 cut(s) 173, 229
EcoICRI GAGCTC 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 110
EcoO65I GGTNACC 2 cut(s) 173, 229
EcoT14I CCWWGG 3 cut(s) 622, 1119, 1225
EcoT38I GRGCYC 2 cut(s) 554, 595
ErhI CCWWGG 3 cut(s) 622, 1119, 1225
FaeI CATG 7 cut(s) 66, 145, 163, 415, 688, 1001, 1123
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 1155, 1187
FatI CATG 7 cut(s) 62, 141, 159, 411, 684, 997, 1119
Fnu4HI GCNGC 8 cut(s) 818, 930, 933, 981, 1002, 1060, 1202, 1260
FokI GGATG 2 cut(s) 758, 1203
FriOI GRGCYC 2 cut(s) 554, 595
Fsp4HI GCNGC 8 cut(s) 818, 930, 933, 981, 1002, 1060, 1202, 1260
FspBI CTAG 7 cut(s) 251, 596, 618, 942, 959, 1151, 1185
GluI GCNGC 8 cut(s) 818, 930, 933, 981, 1002, 1060, 1202, 1260
GsuI CTGGAG 2 cut(s) 181, 869
HaeIII GGCC 1 cut(s) 260
HapII CCGG 2 cut(s) 234, 834
Hin1II CATG 7 cut(s) 66, 145, 163, 415, 688, 1001, 1123
HinfI GANTC 3 cut(s) 59, 520, 1249
HpaII CCGG 2 cut(s) 234, 834
HphI GGTGA 3 cut(s) 167, 223, 343
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 8 cut(s) 88, 419, 547, 609, 685, 857, 886, 1185
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 661, 786, 1287, 1427
HpyCH4III ACNGT 4 cut(s) 138, 355, 915, 1157
HpyCH4IV ACGT 2 cut(s) 436, 1110
HpyCH4V TGCA 8 cut(s) 148, 266, 488, 896, 932, 1016, 1333, 1444
HpyF10VI GCNNNNNNNGC 8 cut(s) 296, 826, 835, 989, 998, 1268, 1355, 1391
HpyF3I CTNAG 4 cut(s) 103, 300, 548, 1286
HpySE526I ACGT 2 cut(s) 436, 1110
Hsp92II CATG 7 cut(s) 66, 145, 163, 415, 688, 1001, 1123
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 6 cut(s) 549, 733, 962, 1129, 1229, 1322
Lsp1109I GCAGC 7 cut(s) 804, 916, 944, 967, 988, 1213, 1246
MaeI CTAG 7 cut(s) 251, 596, 618, 942, 959, 1151, 1185
MaeII ACGT 2 cut(s) 436, 1110
MaeIII GTNAC 4 cut(s) 173, 229, 1085, 1111
MhlI GDGCHC 3 cut(s) 268, 554, 595
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 3 cut(s) 449, 534, 723
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 68, 514
MmeI TCCRAC 3 cut(s) 298, 520, 1300
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 3 cut(s) 278, 377, 530
MslI CAYNNNNRTG 2 cut(s) 164, 1118
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 2 cut(s) 234, 834
MspR9I CCNGG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 1232
MvnI CGCG 1 cut(s) 1091
MwoI GCNNNNNNNGC 8 cut(s) 296, 826, 835, 989, 998, 1268, 1355, 1391
NciI CCSGG 1 cut(s) 835
NcoI CCATGG 1 cut(s) 1119
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 7 cut(s) 66, 145, 163, 415, 688, 1001, 1123
NlaIV GGNNCC 1 cut(s) 1125
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 3 cut(s) 173, 229, 1111
NspI RCATGY 1 cut(s) 1001
NspV TTCGAA 1 cut(s) 78
PagI TCATGA 1 cut(s) 684
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 1 cut(s) 1232
PfeI GAWTC 1 cut(s) 1249
PkrI GCNGC 8 cut(s) 819, 931, 934, 982, 1003, 1061, 1203, 1261
PleI GAGTC 2 cut(s) 67, 514
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 2 cut(s) 67, 514
Ppu21I YACGTR 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 110
PspCI CACGTG 1 cut(s) 437
PspEI GGTNACC 2 cut(s) 173, 229
PspN4I GGNNCC 1 cut(s) 1125
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 1 cut(s) 934
PstNI CAGNNNCTG 1 cut(s) 1259
RsaI GTAC 4 cut(s) 140, 940, 1281, 1366
RsaNI GTAC 4 cut(s) 139, 939, 1280, 1365
RseI CAYNNNNRTG 2 cut(s) 164, 1118
SacI GAGCTC 1 cut(s) 554
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 278, 377, 530
SatI GCNGC 8 cut(s) 818, 930, 933, 981, 1002, 1060, 1202, 1260
Sau96I GGNCC 1 cut(s) 110
ScaI AGTACT 1 cut(s) 940
SchI GAGTC 2 cut(s) 68, 514
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 3 cut(s) 268, 554, 595
SfcI CTRYAG 1 cut(s) 930
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 164, 1118
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
Sse9I AATT 3 cut(s) 449, 534, 723
SsiI CCGC 2 cut(s) 780, 1060
SspMI CTAG 7 cut(s) 251, 596, 618, 942, 959, 1151, 1185
SstI GAGCTC 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 3 cut(s) 622, 1119, 1225
TaaI ACNGT 4 cut(s) 138, 355, 915, 1157
TaiI ACGT 2 cut(s) 439, 1113
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 449, 534, 723
TatI WGTACW 2 cut(s) 138, 938
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 1 cut(s) 1249
Tru1I TTAA 3 cut(s) 278, 377, 530
Tru9I TTAA 3 cut(s) 278, 377, 530
TscAI CASTG 3 cut(s) 208, 268, 340
TseFI GTSAC 3 cut(s) 173, 229, 1111
TseI GCWGC 7 cut(s) 817, 929, 932, 980, 1001, 1201, 1259
Tsp45I GTSAC 3 cut(s) 173, 229, 1111
TspDTI ATGAA 5 cut(s) 400, 673, 701, 969, 1437
TspRI CASTG 3 cut(s) 208, 268, 340
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 1184
XceI RCATGY 1 cut(s) 1001
XspI CTAG 7 cut(s) 251, 596, 618, 942, 959, 1151, 1185
ZrmI AGTACT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.