Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

56179530 .. 56180817

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAAGCGAGCTTGATAATATTGCCAAATGATACTGAAGACGAAAGAAAAAGTATTAGTGATAGTTCAAGTACTCATCATCTAACATGGGTTTGTTTCTTTGAAGAAGTGAAGAGACAGTGTTACATAGCAGGACCTATGGTTGCTGTGATCCTGTCCCAGAACTTGTTGCGTATTGTTTCGATGATGATGGTCTGTCACTTGGGTGAGCTTGCTCTCTCTAGCAGCTCTATTGCCATCTCCCTCACTGGAGTCACCGGCTTTAGTCTTTTTATAGGAATGGCGAGTGGACTGGAAACATTATGTGGCCAAGCATATGGAGCTAAGCAATATCAGAAACTTGGACTTCAAACTTACACTGCCATATTTTCTATCAACTTAGTTGGTCTACCATTATCTTTGATATGGATATACATGGAGGACTTGCTGATTTTGATTGGTCAAGATCCTTCAATTTCTCGTGAAGCTGGTAAATTCACAATTTGGCTTATTCCAGCTCTATTTGCTTATGCAACTCTTCAAGCATTGATTAGATACTTCCAGACACAAAGTTTAATAGTTCCTATGCTTCTAAGCTCTTGCGCGACCCTTTTGTTCCATATTCCTCTTTGTTGGGTTCTAGTATTTAAGTCTGGACTGGATAATGTTGGAGGGGCATTAGCAATCAGTATTTCATATTGGTTGAATGTTATTTTACTCATATTCTACATGGAGTTTTCTTCTGCCTGTGCAAAAACTAGAGTTCCAATTTCTATGGAGGTATTCTATGGAATCAAAGAGTTCTTCAGCTTTGCTATCCCTTCTGCAGTCATGATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

273

Amino Acids

30.26

Weight (kDa)

5.54

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	46 - 206	4.6e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	388
AccII	CGCG	1 cut(s)	584
AclWI	GGATC	2 cut(s)	145, 440
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	57, 769
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	69, 104, 350, 453, 521, 685
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	8 cut(s)	12, 211, 228, 323, 467, 497, 576, 789
AluI	AGCT	8 cut(s)	12, 211, 228, 323, 467, 497, 576, 789
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	145, 440
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	218, 247
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	309
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	184, 245
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	222, 620, 738
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	3 cut(s)	253, 297, 642
BseNI	ACTGG	3 cut(s)	253, 297, 642
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	150, 445
Bsp1720I	GCTNAGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	2 cut(s)	145, 440
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	253, 297, 642
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	2 cut(s)	150, 445
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	2 cut(s)	107, 522
BstC8I	GCNNGC	2 cut(s)	10, 213
BstDEI	CTNAG	3 cut(s)	324, 379, 572
BstFNI	CGCG	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	2 cut(s)	153, 448
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	150, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 503
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	125, 246, 357
Cac8I	GCNNGC	2 cut(s)	10, 213
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	87, 415, 709, 811
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	324, 379, 572
DpnI	GATC	2 cut(s)	152, 447
DpnII	GATC	2 cut(s)	150, 445
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	107, 522
EarI	CTCTTC	2 cut(s)	107, 522
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	57, 769
EcoO109I	RGGNCCY	1 cut(s)	134
FaeI	CATG	4 cut(s)	90, 418, 712, 814
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	4 cut(s)	86, 414, 708, 810
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	3 cut(s)	222, 620, 738
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	90, 418, 712, 814
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	2 cut(s)	252, 771
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	218, 247
Hpy166II	GTNNAC	2 cut(s)	290, 389
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	5 cut(s)	443, 461, 541, 633, 811
Hpy8I	GTNNAC	2 cut(s)	290, 389
HpyAV	CCTTC	2 cut(s)	459, 810
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	512, 731, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 503
HpyF3I	CTNAG	3 cut(s)	324, 379, 572
Hsp92II	CATG	4 cut(s)	90, 418, 712, 814
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	150, 445
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	3 cut(s)	222, 620, 738
MaeIII	GTNAC	3 cut(s)	122, 197, 253
MalI	GATC	2 cut(s)	152, 447
MboI	GATC	2 cut(s)	150, 445
MboII	GAAGA	6 cut(s)	50, 116, 124, 509, 711, 775
MflI	RGATCY	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	4 cut(s)	453, 473, 480, 747
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	5 cut(s)	254, 412, 615, 644, 751
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	2 cut(s)	554, 627
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	320, 503
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	150, 445
NlaIII	CATG	4 cut(s)	90, 418, 712, 814
NmuCI	GTSAC	2 cut(s)	197, 253
OliI	CACNNNNGTG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	771
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	554, 627
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	150, 445
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	453, 473, 480, 747
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	3 cut(s)	222, 620, 738
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	182
TasI	AATT	4 cut(s)	453, 473, 480, 747
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	771
Tru1I	TTAA	2 cut(s)	554, 627
Tru9I	TTAA	2 cut(s)	554, 627
TscAI	CASTG	3 cut(s)	125, 253, 364
TseFI	GTSAC	2 cut(s)	197, 253
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	2 cut(s)	197, 253
TspDTI	ATGAA	1 cut(s)	663
TspRI	CASTG	3 cut(s)	125, 253, 364
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	3 cut(s)	222, 620, 738
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.