Rmu_co8148826.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8148826.1
Physical Location & Seq
Reverse (-)
65 .. 607
543 bp
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UTR
Exon/CDS
Intron
Rmu_co8148826.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atggccagtggactcgaaacattatgtggccaagcatatggagctaagcaatatcagaaacttggacttcaaacttacactgccatattttctatcaacttagttggtctaccattatctttgatatggatatacatggaggacttgctgattttgattggtcaagatccttcgatttctcgtgaagctggtaaattcacaatttggcttattccagctctatttgcttatgcaactcttcaagcattgattagatacttccagacacaaagtttaatagttcctatgcttctaagctcttgcgcgacccttttgttccatattcctctttgttgggttctagtatttaagtctggactggataatgttggaggtgcattagcaatcagtatttcatattggttgaatgttattttactcatattctacatgaagttttcttctgcctgtgcaaaaactagagttccaatttctatggaggtattctatggaatcaaagagttcttcagctttgctatcccttctgcagtcatgatatggtag

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

8.33

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 109
AccII CGCG 1 cut(s) 305
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 2 cut(s) 3, 28
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 490
AgsI TTSAA 3 cut(s) 71, 242, 406
AluBI AGCT 5 cut(s) 44, 188, 218, 297, 510
AluI AGCT 5 cut(s) 44, 188, 218, 297, 510
AlwI GGATC 1 cut(s) 161
AoxI GGCC 2 cut(s) 3, 28
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 305
BalI TGGCCA 2 cut(s) 5, 30
BauI CACGAG 1 cut(s) 180
BfaI CTAG 2 cut(s) 341, 459
BfmI CTRYAG 1 cut(s) 525
BlpI GCTNAGC 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 6, 363
BseNI ACTGG 2 cut(s) 6, 363
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 2 cut(s) 5, 30
BsnI GGCC 2 cut(s) 5, 30
Bsp143I GATC 1 cut(s) 166
Bsp1720I GCTNAGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 5, 30
BspFNI CGCG 1 cut(s) 305
BspHI TCATGA 1 cut(s) 531
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 161
BsrI ACTGG 2 cut(s) 6, 363
BssMI GATC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 45, 100, 293
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 41, 224
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 5, 30
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 13, 78
CciI TCATGA 1 cut(s) 531
CfoI GCGC 1 cut(s) 305
CviAII CATG 3 cut(s) 136, 430, 532
CviJI RGCY 8 cut(s) 5, 30, 44, 188, 208, 218, 297, 510
CviKI_1 RGCY 8 cut(s) 5, 30, 44, 188, 208, 218, 297, 510
DdeI CTNAG 3 cut(s) 45, 100, 293
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 3, 28
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 490
FaeI CATG 3 cut(s) 139, 433, 535
FatI CATG 3 cut(s) 135, 429, 531
FauNDI CATATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 109
FspBI CTAG 2 cut(s) 341, 459
GlaI GCGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 5, 30
HhaI GCGC 1 cut(s) 305
Hin1II CATG 3 cut(s) 139, 433, 535
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 2 cut(s) 12, 492
Hpy166II GTNNAC 2 cut(s) 11, 110
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 5 cut(s) 164, 182, 262, 354, 532
Hpy8I GTNNAC 2 cut(s) 11, 110
HpyAV CCTTC 2 cut(s) 180, 531
HpyCH4V TGCA 4 cut(s) 233, 377, 452, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 224
HpyF3I CTNAG 3 cut(s) 45, 100, 293
Hsp92II CATG 3 cut(s) 139, 433, 535
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 19, 174, 228, 275, 339, 344, 460
MaeI CTAG 2 cut(s) 341, 459
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 230, 432, 496
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 5, 30
MluCI AATT 3 cut(s) 194, 201, 468
MluNI TGGCCA 2 cut(s) 5, 30
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 4 cut(s) 133, 336, 365, 472
Mox20I TGGCCA 2 cut(s) 5, 30
MscI TGGCCA 2 cut(s) 5, 30
MseI TTAA 2 cut(s) 275, 348
Msp20I TGGCCA 2 cut(s) 5, 30
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 41, 224
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 139, 433, 535
PagI TCATGA 1 cut(s) 531
PfeI GAWTC 1 cut(s) 492
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 166
SaqAI TTAA 2 cut(s) 275, 348
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 6
SetI ASST 7 cut(s) 46, 190, 220, 299, 376, 483, 512
SfcI CTRYAG 1 cut(s) 525
Sse9I AATT 3 cut(s) 194, 201, 468
SspMI CTAG 2 cut(s) 341, 459
TaqI TCGA 2 cut(s) 15, 173
TasI AATT 3 cut(s) 194, 201, 468
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 2 cut(s) 275, 348
Tru9I TTAA 2 cut(s) 275, 348
TscAI CASTG 2 cut(s) 13, 85
TspDTI ATGAA 2 cut(s) 384, 446
TspRI CASTG 2 cut(s) 13, 85
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 2 cut(s) 341, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.