Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

56189654 .. 56192801

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTTGCTGTGGTCCTATCCCAGTACTTGTTGCAGGTCGTTTCAACGATGATGGTTGGTCATCTTGGTGAGCTAGCTCTCTCTAGCACTGCCATAGCCACCTCTCTAGCTACTGTCACTGGCTTTAGTCTTTTTTTAGGAATGGCTAGTGCACTGGAAACCTTATGTGGACAAGCTTATGGAGCTGAGCAATATCAAAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGTCTTCCTATATCTTTCATATGGTTTTATGTGGAGGACTTGTTGATTTTGATTGGTCAAGATCCTTCAATTTCTCATCAAGCTGGCAAATTCATAATTTGGCTCATTCCGGCTCTTTTTGCATATGCAACTCTTCAACCGCTGAATAGATACTTTCAGACACAAAGTTTAATACTTCCTATGCTTCTGAGCTCTTGTGCAACCCTTTTGTTCCACATTCCTCTCTGTTGGGTCCTAGTATTCAAATCTGGACTGGATAACCTTGGAGGAGCATTGGCAATGAGTATTTCGTACTGGTTGAATGCGATTTTACTCGGATTATACATGAAGTTCTCTTCTACATGTTCAAAAACTAGAGCTCCAATTTCTAAGGAGGTATTTCAAGGAATTGGAGAGTTCTTTCGATTTGCAGTCCCTTCTGCAATTATGTTATGCCTTGAGTGGTGGTCATTTGAGCTTCTCATCTTGCTGTGTGGGCTTTTACCAAATCCTGCTCTTGAAACTTCAGTGTTGTCTGTATGCCTCCAGACCATTTCGACACTCTATTCAATACCCTATGGATTTGGAGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCTGAAGGTGCTCGTATAGCTACTTGTGCTGCCATGTTTCTTACAGTCGCAGAGACAAGTACAGTAGCCACAACCCTCTTTTGCTGCAGGCATGTATTTGGTTACCTCTTCAGCAATGAGGAAGAAGTCGTCAATTATGTCAGAACAATGGCTCCTCTTGTTTGCCTCTCTGTTATACTAGACAGCTTCCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATTTTTGTGGGATTCCAGTTGCTGCTACATTAGCTTTCTGGGTTCAACTAAGAGGAAGGGGTCTTTGGATTGGAATACAAGTTGGAGCTTTTGTGCAAACCACTCTGCTTGCTATTGTAACAACTTGTACAAACTGGGAAAAGCAGGCAAGTAAGGCAAGGGAGCGGATATTTGAGGGAAGCACTCTAGTTGAGAATGGATTGTGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

444

Amino Acids

48.32

Weight (kDa)

6.08

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	3 - 160	1.2e-32	MatE
MatE	PF01554	221 - 383	1.2e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccBSI	CCGCTC	2 cut(s)	815, 1288
AciI	CCGC	3 cut(s)	386, 815, 1288
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	3 cut(s)	735, 882, 952
AfaI	GTAC	5 cut(s)	26, 539, 826, 919, 1252
AflIII	ACRYGT	1 cut(s)	587
AjuI	GAANNNNNNNTTGG	2 cut(s)	1171, 1203
AloI	GAACNNNNNNTCC	2 cut(s)	994, 1026
Alw21I	GWGCWC	4 cut(s)	154, 440, 607, 871
Alw26I	GTCTC	1 cut(s)	905
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	1145
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	5 cut(s)	818, 887, 942, 1087, 1145
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	13, 478, 1054
AsuHPI	GGTGA	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	3 cut(s)	13, 478, 1054
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	440, 607
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	4 cut(s)	154, 440, 607, 871
BbvI	GCAGC	5 cut(s)	830, 874, 929, 1099, 1132
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	905
BfmI	CTRYAG	1 cut(s)	943
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	6 cut(s)	816, 819, 888, 943, 1088, 1146
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	6 cut(s)	817, 820, 889, 944, 1089, 1147
BmcAI	AGTACT	2 cut(s)	26, 826
Bme18I	GGWCC	3 cut(s)	13, 478, 1054
BmgT120I	GGNCC	3 cut(s)	13, 478, 1054
BmiI	GGNNCC	3 cut(s)	479, 1011, 1055
BmrI	ACTGGG	2 cut(s)	16, 1267
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	2 cut(s)	16, 1267
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	508, 1048, 1111
BsaXI	ACNNNNNCTCC	8 cut(s)	272, 302, 589, 619, 994, 1024, 1200, 1230
Bse1I	ACTGG	7 cut(s)	22, 124, 159, 504, 545, 1139, 1262
Bse3DI	GCAATG	2 cut(s)	531, 979
BseDI	CCNNGG	3 cut(s)	508, 1048, 1111
BseGI	GGATG	1 cut(s)	1082
BseMI	GCAATG	2 cut(s)	531, 979
BseMII	CTCAG	2 cut(s)	177, 425
BseNI	ACTGG	7 cut(s)	22, 124, 159, 504, 545, 1139, 1262
BseRI	GAGGAG	2 cut(s)	528, 1002
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	5 cut(s)	830, 874, 929, 1099, 1132
BsiHKAI	GWGCWC	4 cut(s)	154, 440, 607, 871
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	553
Bsp1286I	GDGCHC	4 cut(s)	154, 440, 607, 871
Bsp1407I	TGTACA	1 cut(s)	1250
Bsp143I	GATC	1 cut(s)	307
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	386, 815, 1288
BspCNI	CTCAG	2 cut(s)	178, 426
BspLI	GGNNCC	3 cut(s)	479, 1011, 1055
BspMAI	CTGCAG	1 cut(s)	947
BspMI	ACCTGC	1 cut(s)	25
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	2 cut(s)	815, 1288
BsrDI	GCAATG	2 cut(s)	531, 979
BsrGI	TGTACA	1 cut(s)	1250
BsrI	ACTGG	7 cut(s)	22, 124, 159, 504, 545, 1139, 1262
BssECI	CCNNGG	3 cut(s)	508, 1048, 1111
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	3 cut(s)	508, 1048, 1111
Bst4CI	ACNGT	3 cut(s)	115, 904, 922
Bst6I	CTCTTC	3 cut(s)	384, 586, 971
BstAUI	TGTACA	1 cut(s)	1250
BstC8I	GCNNGC	6 cut(s)	75, 331, 853, 947, 1233, 1269
BstDEI	CTNAG	5 cut(s)	186, 241, 434, 615, 1172
BstEII	GGTNACC	1 cut(s)	959
BstF5I	GGATG	1 cut(s)	1082
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 365, 721, 875, 884, 1154, 1277
BstNSI	RCATGY	2 cut(s)	591, 953
BstPI	GGTNACC	1 cut(s)	959
BstSFI	CTRYAG	1 cut(s)	943
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	5 cut(s)	830, 874, 929, 1099, 1132
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	1082
BtsI	GCAGTG	2 cut(s)	87, 219
BtsIMutI	CAGTG	5 cut(s)	87, 117, 152, 219, 759
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	6 cut(s)	75, 331, 853, 947, 1233, 1269
CaiI	CAGNNNCTG	1 cut(s)	1145
Cfr13I	GGNCC	3 cut(s)	13, 478, 1054
Csp6I	GTAC	5 cut(s)	25, 538, 825, 918, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	1213, 1248
CviAII	CATG	4 cut(s)	571, 588, 892, 950
CviQI	GTAC	5 cut(s)	25, 538, 825, 918, 1251
DdeI	CTNAG	5 cut(s)	186, 241, 434, 615, 1172
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	3 cut(s)	384, 586, 971
EarI	CTCTTC	3 cut(s)	384, 586, 971
Ecl136II	GAGCTC	2 cut(s)	438, 605
Eco130I	CCWWGG	3 cut(s)	508, 1048, 1111
Eco24I	GRGCYC	2 cut(s)	440, 607
Eco47I	GGWCC	3 cut(s)	13, 478, 1054
Eco53kI	GAGCTC	2 cut(s)	438, 605
Eco57I	CTGAAG	3 cut(s)	735, 882, 952
Eco91I	GGTNACC	1 cut(s)	959
EcoICRI	GAGCTC	2 cut(s)	438, 605
EcoO109I	RGGNCCY	2 cut(s)	478, 1054
EcoO65I	GGTNACC	1 cut(s)	959
EcoT14I	CCWWGG	3 cut(s)	508, 1048, 1111
EcoT38I	GRGCYC	2 cut(s)	440, 607
ErhI	CCWWGG	3 cut(s)	508, 1048, 1111
FaeI	CATG	4 cut(s)	574, 591, 895, 953
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	570, 587, 891, 949
FauNDI	CATATG	2 cut(s)	266, 370
Fnu4HI	GCNGC	6 cut(s)	816, 819, 888, 943, 1088, 1146
FokI	GGATG	1 cut(s)	1089
FriOI	GRGCYC	2 cut(s)	440, 607
Fsp4HI	GCNGC	6 cut(s)	816, 819, 888, 943, 1088, 1146
GluI	GCNGC	6 cut(s)	816, 819, 888, 943, 1088, 1146
GsuI	CTGGAG	1 cut(s)	755
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	4 cut(s)	574, 591, 895, 953
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	1135
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	152, 170
Hpy188I	TCNGA	4 cut(s)	405, 435, 563, 1001
Hpy188III	TCNNGA	4 cut(s)	305, 495, 743, 772
Hpy8I	GTNNAC	2 cut(s)	152, 170
HpyAV	CCTTC	4 cut(s)	321, 672, 857, 1173
HpyCH4III	ACNGT	3 cut(s)	115, 904, 922
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 365, 721, 875, 884, 1154, 1277
HpyF3I	CTNAG	5 cut(s)	186, 241, 434, 615, 1172
Hsp92II	CATG	4 cut(s)	574, 591, 895, 953
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	9 cut(s)	182, 515, 610, 812, 848, 1015, 1115, 1208, 1285
Lsp1109I	GCAGC	5 cut(s)	830, 874, 929, 1099, 1132
MaeIII	GTNAC	3 cut(s)	115, 959, 1240
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	2 cut(s)	815, 1288
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	242, 371, 573, 958, 992
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	4 cut(s)	154, 440, 607, 871
MluCI	AATT	7 cut(s)	315, 335, 342, 609, 633, 669, 991
MmeI	TCCRAC	1 cut(s)	1186
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	7 cut(s)	182, 365, 721, 875, 884, 1154, 1277
NdeI	CATATG	2 cut(s)	266, 370
NdeII	GATC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	574, 591, 895, 953
NlaIV	GGNNCC	3 cut(s)	479, 1011, 1055
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	2 cut(s)	591, 953
PciI	ACATGT	1 cut(s)	587
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	1135
PkrI	GCNGC	6 cut(s)	817, 820, 889, 944, 1089, 1147
PpuMI	RGGWCCY	2 cut(s)	478, 1054
PscI	ACATGT	1 cut(s)	587
Psp124BI	GAGCTC	2 cut(s)	440, 607
Psp5II	RGGWCCY	2 cut(s)	478, 1054
PspEI	GGTNACC	1 cut(s)	959
PspN4I	GGNNCC	3 cut(s)	479, 1011, 1055
PspPI	GGNCC	3 cut(s)	13, 478, 1054
PspPPI	RGGWCCY	2 cut(s)	478, 1054
PstI	CTGCAG	1 cut(s)	947
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	5 cut(s)	26, 539, 826, 919, 1252
RsaNI	GTAC	5 cut(s)	25, 538, 825, 918, 1251
RseI	CAYNNNNRTG	1 cut(s)	66
SacI	GAGCTC	2 cut(s)	440, 607
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	6 cut(s)	816, 819, 888, 943, 1088, 1146
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	3 cut(s)	13, 478, 1054
ScaI	AGTACT	2 cut(s)	26, 826
SduI	GDGCHC	4 cut(s)	154, 440, 607, 871
SfcI	CTRYAG	1 cut(s)	943
SinI	GGWCC	3 cut(s)	13, 478, 1054
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	315, 335, 342, 609, 633, 669, 991
SsiI	CCGC	3 cut(s)	386, 815, 1288
SstI	GAGCTC	2 cut(s)	440, 607
StyI	CCWWGG	3 cut(s)	508, 1048, 1111
TaaI	ACNGT	3 cut(s)	115, 904, 922
TaqI	TCGA	2 cut(s)	649, 782
TasI	AATT	7 cut(s)	315, 335, 342, 609, 633, 669, 991
TatI	WGTACW	4 cut(s)	24, 824, 917, 1250
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	1135
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	5 cut(s)	94, 124, 159, 226, 759
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	5 cut(s)	818, 887, 942, 1087, 1145
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	253, 328, 587, 855
TspRI	CASTG	5 cut(s)	94, 124, 159, 226, 759
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	13, 478, 1054
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	2 cut(s)	591, 953
ZrmI	AGTACT	2 cut(s)	26, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.