Rmu_sc0000352.1_g000017

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000352.1
Physical Location & Seq
Forward (+)
55093 .. 57309
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000352.1_g000017.1.cds

Sequence Viewer

Length: 1407 bp
atggaagagagcttgttaacattaccaaaagaagtaaaagatccaagaaaacttagtagtactagtttgacatgggcttatttctttgaagaagtgaagaggcaatgttacatagcaggacctatggttgccgtgattctatcccagaacttgttgcgtgtggtttcgatgatgatggttggtcacttgggtgagcttgctctctctagcacctccattgccatctcgctctctggagtcaccggctttagtctttttataggaatggccagtgcactggaaacaatatgtgggcaagcgtatggagctaagcagtatcagaaacttggactccaaacttacactgctatagtttctctcaacttaatttgtctccctttatctttgtcatggatatatatggaggacttgctgattttcatgggtcaagatcctctcatttctcgcgaagctggcaaattcacaatttggctgattcctgctctatttgcttatgcaactcttcaaccactcatcagatactttcagacacaaagtttgatgactcctatgctcctaagctcttgcgctacccttttgttccatattcctctttgttgggttctagtattcaagtctggactggatgtccttggaggggcattagcaataagtgtctcatattggttgaatgtgattttacttggattgtacatgaagttttcttctgcttgttcacaaaccagagctccagtttctaaggaagtattccatggaatgaaagagttcctttaccttgccatcccttcttcagtaatgatatgcattgagtggtggtcatttgagctgcttattttgctttctgggcttctaccaaatccagctcttgaaacttcggttttgtctgtgtgtctccagaccatttcaacactctatgcaataccttatgggtttggtgctgcagccagtactagagttgcaaatgaactgggagctggtaactcagaatgtgctcgtatagctgcgcatgttgcattgtttcttgcagtcacagagacaagcatagaaacaacaaccctctttgccttccggcattcttttggttacacatttaccaatgagaaacaagtcgtcgattatgtcacatcaatggcacctctagtgtgtattgctagaggatgtgggtggcagcatataggggcttacataaatcttggagcattttatctttgtggaattccagttgctgctatattggctttctggttagagctgagaggaagaggcctttggattggaatacaagttggttctttggtgcagaccataacgctttcttttgtaactagtagtacaaattgggaaatgcaggcaagtaaggcaagagagatggtattccagggaggctcatcagaagatattggatag

Protein Analysis

468

Amino Acids

51.24

Weight (kDa)

6.1

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 1132
AccII CGCG 1 cut(s) 447
AclWI GGATC 2 cut(s) 35, 425
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 458, 1215
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 4 cut(s) 61, 692, 949, 1333
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 6 cut(s) 89, 506, 613, 670, 869, 906
AhdI GACNNNNNGTC 1 cut(s) 626
AhlI ACTAGT 2 cut(s) 62, 1325
AjnI CCWGG 1 cut(s) 1377
AjuI GAANNNNNNNTTGG 2 cut(s) 1252, 1284
AleI CACNNNNGTG 1 cut(s) 189
Alw21I GWGCWC 3 cut(s) 277, 730, 994
Alw26I GTCTC 4 cut(s) 377, 661, 896, 1028
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 2 cut(s) 35, 425
AlwNI CAGNNNCTG 1 cut(s) 1226
AoxI GGCC 2 cut(s) 267, 1264
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 6 cut(s) 826, 938, 941, 1001, 1168, 1226
ApoI RAATTY 2 cut(s) 458, 1215
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
Asp700I GAANNNNTTC 1 cut(s) 764
AspLEI GCGC 2 cut(s) 569, 1006
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 203, 232
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 730
Bbv12I GWGCWC 3 cut(s) 277, 730, 994
BbvI GCAGC 6 cut(s) 813, 925, 953, 988, 1180, 1213
BccI CCATC 4 cut(s) 169, 230, 788, 1363
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 1379
BcoDI GTCTC 4 cut(s) 377, 661, 896, 1028
BcuI ACTAGT 2 cut(s) 62, 1325
BfaI CTAG 7 cut(s) 63, 207, 605, 951, 1139, 1152, 1326
BfmI CTRYAG 2 cut(s) 348, 939
BisI GCNGC 6 cut(s) 827, 939, 942, 1002, 1169, 1227
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 828, 940, 943, 1003, 1170, 1228
BmcAI AGTACT 2 cut(s) 61, 949
Bme1390I CCNGG 1 cut(s) 1379
Bme18I GGWCC 1 cut(s) 119
BmeRI GACNNNNNGTC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 1134
BmrFI CCNGG 1 cut(s) 1379
BmrI ACTGGG 1 cut(s) 977
BmuI ACTGGG 1 cut(s) 977
BpmI CTGGAG 3 cut(s) 255, 714, 878
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 631, 751, 1378
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 7 cut(s) 270, 282, 627, 731, 945, 972, 1220
Bse3DI GCAATG 2 cut(s) 110, 216
BseBI CCWGG 1 cut(s) 1379
BseDI CCNNGG 3 cut(s) 631, 751, 1378
BseGI GGATG 3 cut(s) 631, 780, 1163
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 110, 216
BseMII CTCAG 2 cut(s) 996, 1244
BseNI ACTGG 7 cut(s) 270, 282, 627, 731, 945, 972, 1220
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 6 cut(s) 813, 925, 953, 988, 1180, 1213
BsgI GTGCAG 1 cut(s) 1319
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 269, 1266
BshNI GGYRCC 1 cut(s) 1132
BsiHKAI GWGCWC 3 cut(s) 277, 730, 994
BsiSI CCGG 2 cut(s) 243, 1069
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 4 cut(s) 377, 661, 896, 1028
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 2 cut(s) 269, 1266
Bsp1286I GDGCHC 3 cut(s) 277, 730, 994
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 2 cut(s) 40, 430
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 751
Bsp68I TCGCGA 1 cut(s) 447
BspANI GGCC 2 cut(s) 269, 1266
BspCNI CTCAG 2 cut(s) 995, 1245
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 1134
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 2 cut(s) 35, 425
BspT107I GGYRCC 1 cut(s) 1132
BsrDI GCAATG 2 cut(s) 110, 216
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 7 cut(s) 270, 282, 627, 731, 945, 972, 1220
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 631, 751, 1378
BssMI GATC 2 cut(s) 40, 430
BssT1I CCWWGG 2 cut(s) 631, 751
Bst2UI CCWGG 1 cut(s) 1379
Bst6I CTCTTC 3 cut(s) 92, 507, 1255
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 4 cut(s) 198, 297, 454, 1350
BstDEI CTNAG 6 cut(s) 53, 309, 557, 738, 982, 1253
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 3 cut(s) 631, 780, 1163
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 2 cut(s) 569, 1006
BstKTI GATC 2 cut(s) 43, 433
BstMAI GTCTC 4 cut(s) 377, 661, 896, 1028
BstMBI GATC 2 cut(s) 40, 430
BstMWI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1235, 1358
BstNI CCWGG 1 cut(s) 1379
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 1377
BstSFI CTRYAG 2 cut(s) 348, 939
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 6 cut(s) 813, 925, 953, 988, 1180, 1213
BstX2I RGATCY 2 cut(s) 40, 430
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 40, 430
BsuRI GGCC 2 cut(s) 269, 1266
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 3 cut(s) 631, 780, 1163
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 275, 277, 342
BtuMI TCGCGA 1 cut(s) 447
Cac8I GCNNGC 4 cut(s) 198, 297, 454, 1350
CaiI CAGNNNCTG 1 cut(s) 1226
CfoI GCGC 2 cut(s) 569, 1006
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 4 cut(s) 60, 691, 948, 1332
CviAII CATG 6 cut(s) 72, 390, 421, 694, 752, 1007
CviQI GTAC 4 cut(s) 60, 691, 948, 1332
DdeI CTNAG 6 cut(s) 53, 309, 557, 738, 982, 1253
DpnI GATC 2 cut(s) 42, 432
DpnII GATC 2 cut(s) 40, 430
DriI GACNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 92, 507, 1255
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 3 cut(s) 92, 507, 1255
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 631, 751
Eco147I AGGCCT 1 cut(s) 1266
Eco24I GRGCYC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 1215
EcoRII CCWGG 1 cut(s) 1377
EcoT14I CCWWGG 2 cut(s) 631, 751
EcoT22I ATGCAT 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 2 cut(s) 631, 751
FaeI CATG 6 cut(s) 75, 393, 424, 697, 755, 1010
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FatI CATG 6 cut(s) 71, 389, 420, 693, 751, 1006
Fnu4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1169, 1227
FokI GGATG 3 cut(s) 638, 767, 1170
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1169, 1227
FspBI CTAG 7 cut(s) 63, 207, 605, 951, 1139, 1152, 1326
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 2 cut(s) 568, 1005
GluI GCNGC 6 cut(s) 827, 939, 942, 1002, 1169, 1227
GsuI CTGGAG 3 cut(s) 255, 714, 878
HaeIII GGCC 2 cut(s) 269, 1266
HapII CCGG 2 cut(s) 243, 1069
HhaI GCGC 2 cut(s) 569, 1006
Hin1II CATG 6 cut(s) 75, 393, 424, 697, 755, 1010
Hin6I GCGC 2 cut(s) 567, 1004
HinP1I GCGC 2 cut(s) 567, 1004
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 5 cut(s) 136, 237, 330, 475, 544
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 2 cut(s) 243, 1069
HphI GGTGA 2 cut(s) 203, 232
Hpy166II GTNNAC 3 cut(s) 18, 275, 716
Hpy188I TCNGA 5 cut(s) 321, 518, 528, 985, 1393
Hpy188III TCNNGA 6 cut(s) 234, 428, 446, 618, 866, 895
Hpy8I GTNNAC 3 cut(s) 18, 275, 716
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 2 cut(s) 795, 1075
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1235, 1358
HpyF3I CTNAG 6 cut(s) 53, 309, 557, 738, 982, 1253
Hsp92II CATG 6 cut(s) 75, 393, 424, 697, 755, 1010
HspAI GCGC 2 cut(s) 567, 1004
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 40, 430
LmnI GCTCC 5 cut(s) 305, 558, 733, 971, 1196
Lsp1109I GCAGC 6 cut(s) 813, 925, 953, 988, 1180, 1213
MaeI CTAG 7 cut(s) 63, 207, 605, 951, 1139, 1152, 1326
MaeIII GTNAC 8 cut(s) 107, 182, 238, 977, 1027, 1082, 1120, 1321
MalI GATC 2 cut(s) 42, 432
MboI GATC 2 cut(s) 40, 430
MboII GAAGA 8 cut(s) 17, 101, 109, 494, 696, 780, 1272, 1406
MflI RGATCY 2 cut(s) 40, 430
MhlI GDGCHC 3 cut(s) 277, 730, 994
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 366, 458, 465, 1215, 1336
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 3 cut(s) 246, 324, 538
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 764
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 17, 365
MslI CAYNNNNRTG 2 cut(s) 189, 1127
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 2 cut(s) 243, 1069
MspR9I CCNGG 1 cut(s) 1379
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 1379
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1235, 1358
NcoI CCATGG 1 cut(s) 751
NdeII GATC 2 cut(s) 40, 430
NlaIII CATG 6 cut(s) 75, 393, 424, 697, 755, 1010
NlaIV GGNNCC 1 cut(s) 1134
NmuCI GTSAC 4 cut(s) 182, 238, 1027, 1120
NruI TCGCGA 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 1005
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 1 cut(s) 1010
OliI CACNNNNGTG 1 cut(s) 189
PceI AGGCCT 1 cut(s) 1266
PctI GAATGC 1 cut(s) 1072
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 2 cut(s) 136, 475
PkrI GCNGC 6 cut(s) 828, 940, 943, 1003, 1170, 1228
PleI GAGTC 3 cut(s) 245, 324, 538
PpsI GAGTC 3 cut(s) 245, 324, 538
PpuMI RGGWCCY 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 1377
PspGI CCWGG 1 cut(s) 1377
PspN4I GGNNCC 1 cut(s) 1134
PspPI GGNCC 1 cut(s) 119
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 2 cut(s) 40, 430
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 4 cut(s) 61, 692, 949, 1333
RsaNI GTAC 4 cut(s) 60, 691, 948, 1332
RseI CAYNNNNRTG 2 cut(s) 189, 1127
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 17, 365
SatI GCNGC 6 cut(s) 827, 939, 942, 1002, 1169, 1227
Sau3AI GATC 2 cut(s) 40, 430
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 2 cut(s) 61, 949
SchI GAGTC 3 cut(s) 246, 324, 538
ScrFI CCNGG 1 cut(s) 1379
SduI GDGCHC 3 cut(s) 277, 730, 994
SfcI CTRYAG 2 cut(s) 348, 939
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 189, 1127
SpeI ACTAGT 2 cut(s) 62, 1325
Sse9I AATT 5 cut(s) 366, 458, 465, 1215, 1336
SseBI AGGCCT 1 cut(s) 1266
SspMI CTAG 7 cut(s) 63, 207, 605, 951, 1139, 1152, 1326
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 1266
StyD4I CCNGG 1 cut(s) 1377
StyI CCWWGG 2 cut(s) 631, 751
TaqI TCGA 2 cut(s) 167, 1113
TasI AATT 5 cut(s) 366, 458, 465, 1215, 1336
TatI WGTACW 4 cut(s) 59, 690, 947, 1331
TfiI GAWTC 2 cut(s) 136, 475
Tru1I TTAA 2 cut(s) 17, 365
Tru9I TTAA 2 cut(s) 17, 365
TscAI CASTG 3 cut(s) 277, 282, 349
TseFI GTSAC 4 cut(s) 182, 238, 1027, 1120
TseI GCWGC 6 cut(s) 826, 938, 941, 1001, 1168, 1226
Tsp45I GTSAC 4 cut(s) 182, 238, 1027, 1120
TspDTI ATGAA 4 cut(s) 409, 710, 773, 978
TspRI CASTG 3 cut(s) 277, 282, 349
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 2 cut(s) 458, 1215
XceI RCATGY 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 7 cut(s) 63, 207, 605, 951, 1139, 1152, 1326
ZrmI AGTACT 2 cut(s) 61, 949
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.