Rh4AG327700

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
63906145 .. 63909229
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG327700.1

Sequence Viewer

Length: 1473 bp
ATGGAAGCGAGCTTGATAACATTGCCAAATGATACTGAAGACGAAAGAAAAAGTAGAAGTGATAGTTCAAGTACTCATCATCTAACATGGGTTTGTTTCTTTGAAGAAGTGAAGAGACAGTGTTACATAGCAGGACCTATGGTTGCTGTGATCCTGTCCCAGAACTTGTTGCGTATTGTTTCGATGATGATGGTTGGTCACTTGGGTGAGCTTGCTCTCTCTAGCAGCTCTATTGCCATCTCCCTCACTGGAGTCACCGGCTTTAGTCTTTTTATAGGAATGGCCAGTGGACTGGAAACATTATGTGGCCAAGCATATGGAGCTAAGCAATATCAGAAACTTGGACTTCAAACTTACACTGCCATATTTTCTATCAACTTAGTTGGTCTACCATTATCTTTGATATGGATATACATGGAGGACTTGCTGATTTTGATTGGTCAAGATCCTTCAATTTCTCGTGAAGCTGGTAAATTCACAATTTGGCTTATTCCAGCTCTATTTGCTTATGCAACTCTTCAAGCATTGATTAGATACTTCCAGACACAAAGTTTAATAGTTCCTATGCTTCTAAGCTCTTGCGCGACCCTTTTGTTCCATATTCCTCTTTGTTGGGTTCTAGTATTTAAGTCTGGACTGGATAATGTTGGAGGGGCATTAGCAATCAGTATTTCATATTGGTTGAATGTTATTTTACTCATATTCTACATGAAGTTTTCTTCTGCCTGTGCAAAAACTAGAGTTCCAATTTCTATGGAGGTATTCTATGGAATCAAAGAGTTCTTCAGCTTTGCTATCCCTTCTGCAATTATGATATGCCTTGAGTGGTGGTCATTTGAGATGCTTATCTTGCTGTCCGGAATTCTACAAAATCCGGCTCTTGAAACTTCAGTTCTGTCTGTATGTCTCCAGACCATTGTGACAGTCTATTACATACCATATGGGTTTGCTGCTGCAGCAAGTATTAGAGTTTCCAACGAACTAGGAGCTGGTAACCCAGAAGGTGCTCGTATAGCAACATGTGCTGCGATGTTTCTTGCAATCACAGAGACAGCTATAGTAACCACAACTCTCTTTGCTTGCCGAAATGTATTTGGTTATGTTTTTAGCAATGAGCAAGAAGTTGTTGATTATGTCACAACCATGGCTCCTCTAGTTTGCTTGTCTGTTTTACTAGACAGCTTGCAAGCCGTCCTTTCAGGTATTGCTAGAGGGTGTGGGTGGCAGCACATAGTGGCTTACATAAACCTTGCAGCATTTTATATTTTTGGAATTCCAATTGCTGCCTTACTGGCTTTCTGGATACAACTAGGAGGAAGGGGCCTTTGGATTGGAATCCAAGTTGGTGCTTTTGTGCAAACAATTCTGCTTTCTTTTGTCACGACTTGTACAAATTGGGATAAACAGGCACATAAGGCGAGGGCTAGGATATATGAGGGAAGCTCTCTCGAAGCTAATGGATTGCTGCACTAA

Protein Analysis

490

Amino Acids

53.71

Weight (kDa)

5.83

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 46 - 206 1.8e-30 MatE
MatE PF01554 267 - 429 2.1e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AccII CGCG 1 cut(s) 584
AccIII TCCGGA 1 cut(s) 857
AclWI GGATC 2 cut(s) 145, 440
AcoI YGGCCR 2 cut(s) 282, 307
AcsI RAATTY 3 cut(s) 473, 861, 1272
AcuI CTGAAG 3 cut(s) 57, 769, 873
AdeI CACNNNGTG 1 cut(s) 1234
AfaI GTAC 2 cut(s) 73, 1390
AflIII ACRYGT 1 cut(s) 1019
AgsI TTSAA 7 cut(s) 69, 104, 350, 453, 521, 685, 884
AjuI GAANNNNNNNTTGG 2 cut(s) 1309, 1341
AleI CACNNNNGTG 1 cut(s) 204
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 3 cut(s) 109, 911, 1043
AlwI GGATC 2 cut(s) 145, 440
Aor13HI TCCGGA 1 cut(s) 857
AoxI GGCC 3 cut(s) 282, 307, 1321
ApeKI GCWGC 9 cut(s) 225, 950, 953, 956, 1025, 1225, 1253, 1283, 1465
ApoI RAATTY 3 cut(s) 473, 861, 1272
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 2 cut(s) 134, 1321
AsuHPI GGTGA 2 cut(s) 218, 247
AvaII GGWCC 1 cut(s) 134
BalI TGGCCA 2 cut(s) 284, 309
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 1009
BbvI GCAGC 9 cut(s) 237, 937, 940, 968, 1012, 1237, 1265, 1270, 1452
BccI CCATC 2 cut(s) 184, 245
BceAI ACGGC 1 cut(s) 1175
BciVI GTATCC 1 cut(s) 1296
BcoDI GTCTC 3 cut(s) 109, 911, 1043
BfaI CTAG 9 cut(s) 222, 620, 738, 983, 1154, 1175, 1209, 1310, 1425
BfmI CTRYAG 2 cut(s) 954, 1056
BfuI GTATCC 1 cut(s) 1296
BglI GCCNNNNNGGC 1 cut(s) 1292
BisI GCNGC 9 cut(s) 226, 951, 954, 957, 1026, 1226, 1254, 1284, 1466
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 9 cut(s) 227, 952, 955, 958, 1027, 1227, 1255, 1285, 1467
BmcAI AGTACT 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 134, 1321
BmiI GGNNCC 2 cut(s) 1149, 1322
BmsI GCATC 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1427, 1459
BpmI CTGGAG 2 cut(s) 270, 893
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 842
BsaBI GATNNNNATC 2 cut(s) 845, 1334
BsaJI CCNNGG 1 cut(s) 1143
BsaWI WCCGGW 1 cut(s) 857
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 5 cut(s) 253, 285, 297, 642, 1296
Bse3DI GCAATG 2 cut(s) 20, 1117
Bse8I GATNNNNATC 2 cut(s) 845, 1334
BseAI TCCGGA 1 cut(s) 857
BseDI CCNNGG 1 cut(s) 1143
BseJI GATNNNNATC 2 cut(s) 845, 1334
BseMI GCAATG 2 cut(s) 20, 1117
BseNI ACTGG 5 cut(s) 253, 285, 297, 642, 1296
BseRI GAGGAG 1 cut(s) 1140
BseXI GCAGC 9 cut(s) 237, 937, 940, 968, 1012, 1237, 1265, 1270, 1452
BsgI GTGCAG 1 cut(s) 1451
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 3 cut(s) 284, 309, 1323
BsiHKAI GWGCWC 1 cut(s) 1009
BsiSI CCGG 3 cut(s) 258, 858, 875
BslFI GGGAC 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 109, 911, 1043
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 3 cut(s) 284, 309, 1323
Bsp1286I GDGCHC 1 cut(s) 1009
Bsp13I TCCGGA 1 cut(s) 857
Bsp1407I TGTACA 1 cut(s) 1388
Bsp143I GATC 2 cut(s) 150, 445
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 1143
BspANI GGCC 3 cut(s) 284, 309, 1323
BspEI TCCGGA 1 cut(s) 857
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 2 cut(s) 1149, 1322
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 2 cut(s) 145, 440
BsrDI GCAATG 2 cut(s) 20, 1117
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 1388
BsrI ACTGG 5 cut(s) 253, 285, 297, 642, 1296
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 1143
BssMI GATC 2 cut(s) 150, 445
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 1143
Bst2BI CACGAG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 120, 925
Bst6I CTCTTC 2 cut(s) 107, 522
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstAUI TGTACA 1 cut(s) 1388
BstC8I GCNNGC 5 cut(s) 10, 213, 1081, 1184, 1188
BstDEI CTNAG 3 cut(s) 324, 379, 572
BstDSI CCRYGG 1 cut(s) 1143
BstEII GGTNACC 1 cut(s) 992
BstFNI CGCG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 2 cut(s) 153, 448
BstMAI GTCTC 3 cut(s) 109, 911, 1043
BstMBI GATC 2 cut(s) 150, 445
BstMWI GCNNNNNNNGC 8 cut(s) 320, 503, 850, 956, 1013, 1022, 1292, 1415
BstNSI RCATGY 1 cut(s) 1023
BstPI GGTNACC 1 cut(s) 992
BstSFI CTRYAG 2 cut(s) 954, 1056
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 9 cut(s) 237, 937, 940, 968, 1012, 1237, 1265, 1270, 1452
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 292, 317
BstYI RGATCY 1 cut(s) 445
BsuI GTATCC 1 cut(s) 1296
BsuRI GGCC 3 cut(s) 284, 309, 1323
BtgI CCRYGG 1 cut(s) 1143
BtgZI GCGATG 1 cut(s) 1043
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 4 cut(s) 125, 246, 292, 357
Cac8I GCNNGC 5 cut(s) 10, 213, 1081, 1184, 1188
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 134, 1321
Csp6I GTAC 2 cut(s) 72, 1389
CviAII CATG 5 cut(s) 87, 415, 709, 1020, 1144
CviQI GTAC 2 cut(s) 72, 1389
DdeI CTNAG 3 cut(s) 324, 379, 572
DpnI GATC 2 cut(s) 152, 447
DpnII GATC 2 cut(s) 150, 445
DraIII CACNNNGTG 1 cut(s) 1234
EaeI YGGCCR 2 cut(s) 282, 307
Eam1104I CTCTTC 2 cut(s) 107, 522
EarI CTCTTC 2 cut(s) 107, 522
Eco130I CCWWGG 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 57, 769, 873
Eco91I GGTNACC 1 cut(s) 992
EcoO109I RGGNCCY 2 cut(s) 134, 1321
EcoO65I GGTNACC 1 cut(s) 992
EcoRI GAATTC 2 cut(s) 861, 1272
EcoT14I CCWWGG 1 cut(s) 1143
ErhI CCWWGG 1 cut(s) 1143
FaeI CATG 5 cut(s) 90, 418, 712, 1023, 1147
FalI AAGNNNNNCTT 2 cut(s) 1179, 1211
FaqI GGGAC 1 cut(s) 142
FatI CATG 5 cut(s) 86, 414, 708, 1019, 1143
FauNDI CATATG 2 cut(s) 316, 940
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 9 cut(s) 226, 951, 954, 957, 1026, 1226, 1254, 1284, 1466
Fsp4HI GCNGC 9 cut(s) 226, 951, 954, 957, 1026, 1226, 1254, 1284, 1466
FspBI CTAG 9 cut(s) 222, 620, 738, 983, 1154, 1175, 1209, 1310, 1425
GlaI GCGC 1 cut(s) 583
GluI GCNGC 9 cut(s) 226, 951, 954, 957, 1026, 1226, 1254, 1284, 1466
GsuI CTGGAG 2 cut(s) 270, 893
HaeIII GGCC 3 cut(s) 284, 309, 1323
HapII CCGG 3 cut(s) 258, 858, 875
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 90, 418, 712, 1023, 1147
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 3 cut(s) 252, 771, 1335
HpaII CCGG 3 cut(s) 258, 858, 875
HphI GGTGA 2 cut(s) 218, 247
Hpy166II GTNNAC 2 cut(s) 290, 389
Hpy188I TCNGA 1 cut(s) 336
Hpy8I GTNNAC 2 cut(s) 290, 389
HpyAV CCTTC 4 cut(s) 459, 810, 995, 1311
HpyCH4III ACNGT 2 cut(s) 120, 925
HpyCH4V TGCA 9 cut(s) 512, 731, 806, 956, 1040, 1186, 1253, 1357, 1468
HpyF10VI GCNNNNNNNGC 8 cut(s) 320, 503, 850, 956, 1013, 1022, 1292, 1415
HpyF3I CTNAG 3 cut(s) 324, 379, 572
Hsp92II CATG 5 cut(s) 90, 418, 712, 1023, 1147
HspAI GCGC 1 cut(s) 582
Kpn2I TCCGGA 1 cut(s) 857
Kzo9I GATC 2 cut(s) 150, 445
LmnI GCTCC 3 cut(s) 320, 986, 1153
Lsp1109I GCAGC 9 cut(s) 237, 937, 940, 968, 1012, 1237, 1265, 1270, 1452
LweI GCATC 1 cut(s) 831
MaeI CTAG 9 cut(s) 222, 620, 738, 983, 1154, 1175, 1209, 1310, 1425
MaeIII GTNAC 8 cut(s) 122, 197, 253, 919, 992, 1060, 1135, 1378
MalI GATC 2 cut(s) 152, 447
MboI GATC 2 cut(s) 150, 445
MboII GAAGA 6 cut(s) 50, 116, 124, 509, 711, 775
MfeI CAATTG 1 cut(s) 1278
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 1009
MlsI TGGCCA 2 cut(s) 284, 309
MluNI TGGCCA 2 cut(s) 284, 309
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 628, 999
Mox20I TGGCCA 2 cut(s) 284, 309
MroI TCCGGA 1 cut(s) 857
MscI TGGCCA 2 cut(s) 284, 309
MseI TTAA 2 cut(s) 554, 627
MslI CAYNNNNRTG 2 cut(s) 204, 1142
Msp20I TGGCCA 2 cut(s) 284, 309
MspI CCGG 3 cut(s) 258, 858, 875
MunI CAATTG 1 cut(s) 1278
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 8 cut(s) 320, 503, 850, 956, 1013, 1022, 1292, 1415
NcoI CCATGG 1 cut(s) 1143
NdeI CATATG 2 cut(s) 316, 940
NdeII GATC 2 cut(s) 150, 445
NlaIII CATG 5 cut(s) 90, 418, 712, 1023, 1147
NlaIV GGNNCC 2 cut(s) 1149, 1322
NmuCI GTSAC 5 cut(s) 197, 253, 919, 1135, 1378
NspI RCATGY 1 cut(s) 1023
OliI CACNNNNGTG 1 cut(s) 204
PciI ACATGT 1 cut(s) 1019
PfeI GAWTC 2 cut(s) 771, 1335
PkrI GCNGC 9 cut(s) 227, 952, 955, 958, 1027, 1227, 1255, 1285, 1467
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 134
PscI ACATGT 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 992
PspN4I GGNNCC 2 cut(s) 1149, 1322
PspPI GGNCC 2 cut(s) 134, 1321
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 73, 1390
RsaNI GTAC 2 cut(s) 72, 1389
RseI CAYNNNNRTG 2 cut(s) 204, 1142
SaqAI TTAA 2 cut(s) 554, 627
SatI GCNGC 9 cut(s) 226, 951, 954, 957, 1026, 1226, 1254, 1284, 1466
Sau3AI GATC 2 cut(s) 150, 445
Sau96I GGNCC 2 cut(s) 134, 1321
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 1009
SfaNI GCATC 1 cut(s) 831
SfcI CTRYAG 2 cut(s) 954, 1056
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 204, 1142
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
SspMI CTAG 9 cut(s) 222, 620, 738, 983, 1154, 1175, 1209, 1310, 1425
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 2 cut(s) 120, 925
TaqI TCGA 2 cut(s) 182, 1449
TatI WGTACW 2 cut(s) 71, 1388
TfiI GAWTC 2 cut(s) 771, 1335
Tru1I TTAA 2 cut(s) 554, 627
Tru9I TTAA 2 cut(s) 554, 627
TscAI CASTG 4 cut(s) 125, 253, 292, 364
TseFI GTSAC 5 cut(s) 197, 253, 919, 1135, 1378
TseI GCWGC 9 cut(s) 225, 950, 953, 956, 1025, 1225, 1253, 1283, 1465
Tsp45I GTSAC 5 cut(s) 197, 253, 919, 1135, 1378
TspDTI ATGAA 2 cut(s) 663, 725
TspRI CASTG 4 cut(s) 125, 253, 292, 364
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 3 cut(s) 473, 861, 1272
XceI RCATGY 1 cut(s) 1023
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 9 cut(s) 222, 620, 738, 983, 1154, 1175, 1209, 1310, 1425
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.