Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

67681 .. 70184

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atggaggagggattgttattgccaagaggcaaagatcaagtagagcaaagaaaagggtcaagtagtactagtagtctaacatggttttcgttcttcgaagaagtgaagaggttgggatgcttagcaggacctatggttgctgtggtcctatcccagtacttgttgcaggtcgtttcaacgatgatggttggtcatcttggtgagctagctctctctagcactgccatagccacctctctagctactgtcactggctttagtctttttttaggaatggcgagtgcactggaaaccttatgtggacaagcttatggagctgagcaatatcaaaaacttggacttcaaacttacactgctatattttctctcaacttagtttgtctccctatatctttcatatggttttatgtggaggacttgctgattttgattggtcaagatccttcaatttctcatcaagctggcaaattcataatttggctcattccggctctttttgcttatgcaactcttcaaccgctgaatagatactttcagacacaaagtttaatacttcctatgcttctgagctcttgtgcaacccttatgttccacattcctctctgttgggtcctagtattcaaatctggactggataaccttggaggagcattggcaatgagtatttcgtactggttgaatgcgattttactcggattatacatgaagttctctcctacatgttcaaaaactagagctccaatttctaaggaggtattccaaggaattggagagttctttcgatttgcagtcccttctgcaattatgttatgccttgagtggtggtcatttgagcttctcatcttgctgtgtgggcttttaccaaatcctgctcttgaaacttcagtgttgtctgtatgtactagagtttcaaatgaactaggagctggcaaccccgaaggtgctcgtatagctacttttgctgccatgtttcttgcaatcacggaggcaactctaacgaccacaaccctcttttgctgccgccatgtgtttggttacctcttcagcaatgaagaagaagtcatcgattatgtcagaacaatggccttcaggtattgcaagaggatgtgggtggcagcatataggggcttacataaaccttggagcattttatttatgtgggattccagtagctgctacactagctttctgggttcaactaagagggaggggtctttggattggaatacaagttggagcttttgtgcaaaccactctgcttgctattgtaacaacttgtacaaactgggaaaagcaggcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

434

Amino Acids

48.21

Weight (kDa)

7.43

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	2 cut(s)	518, 1021
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	3 cut(s)	867, 1027, 1072
AfaI	GTAC	5 cut(s)	67, 158, 671, 901, 1280
AflIII	ACRYGT	1 cut(s)	719
AhlI	ACTAGT	1 cut(s)	68
Alw21I	GWGCWC	4 cut(s)	286, 572, 739, 946
Alw26I	GTCTC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	1173
AoxI	GGCC	1 cut(s)	1083
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	4 cut(s)	962, 1017, 1115, 1173
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	128, 145, 610
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	3 cut(s)	128, 145, 610
BaeGI	GKGCMC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	572, 739
Bbv12I	GWGCWC	4 cut(s)	286, 572, 739, 946
BbvI	GCAGC	4 cut(s)	949, 1004, 1127, 1160
BccI	CCATC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	9 cut(s)	69, 206, 216, 239, 614, 732, 903, 920, 1182
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	5 cut(s)	963, 1018, 1021, 1116, 1174
BlpI	GCTNAGC	2 cut(s)	121, 318
BlsI	GCNGC	5 cut(s)	964, 1019, 1022, 1117, 1175
BmcAI	AGTACT	2 cut(s)	67, 158
Bme18I	GGWCC	3 cut(s)	128, 145, 610
BmgT120I	GGNCC	3 cut(s)	128, 145, 610
BmiI	GGNNCC	1 cut(s)	611
BmrI	ACTGGG	2 cut(s)	148, 1295
BmsI	GCATC	1 cut(s)	107
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	2 cut(s)	148, 1295
Bpu1102I	GCTNAGC	2 cut(s)	121, 318
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	836
Bsa29I	ATCGAT	1 cut(s)	1065
BsaJI	CCNNGG	3 cut(s)	640, 760, 1139
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 721, 751, 1228, 1258
Bse1I	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1167, 1290
Bse3DI	GCAATG	2 cut(s)	663, 1054
BseCI	ATCGAT	1 cut(s)	1065
BseDI	CCNNGG	3 cut(s)	640, 760, 1139
BseGI	GGATG	2 cut(s)	122, 1110
BseMI	GCAATG	2 cut(s)	663, 1054
BseMII	CTCAG	2 cut(s)	309, 557
BseNI	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1167, 1290
BseRI	GAGGAG	2 cut(s)	20, 660
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	4 cut(s)	949, 1004, 1127, 1160
BshFI	GGCC	1 cut(s)	1085
BshVI	ATCGAT	1 cut(s)	1065
BsiHKAI	GWGCWC	4 cut(s)	286, 572, 739, 946
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	1 cut(s)	1085
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	4 cut(s)	286, 572, 739, 946
Bsp1407I	TGTACA	1 cut(s)	1278
Bsp143I	GATC	2 cut(s)	34, 439
Bsp1720I	GCTNAGC	2 cut(s)	121, 318
BspACI	CCGC	2 cut(s)	518, 1021
BspANI	GGCC	1 cut(s)	1085
BspCNI	CTCAG	2 cut(s)	310, 558
BspDI	ATCGAT	1 cut(s)	1065
BspLI	GGNNCC	1 cut(s)	611
BspMI	ACCTGC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	663, 1054
BsrGI	TGTACA	1 cut(s)	1278
BsrI	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1167, 1290
BssECI	CCNNGG	3 cut(s)	640, 760, 1139
BssMI	GATC	2 cut(s)	34, 439
BssT1I	CCWWGG	3 cut(s)	640, 760, 1139
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	3 cut(s)	101, 516, 1046
BstAUI	TGTACA	1 cut(s)	1278
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	207, 463, 928, 1261, 1297
BstDEI	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1200
BstEII	GGTNACC	1 cut(s)	1034
BstF5I	GGATG	2 cut(s)	122, 1110
BstKTI	GATC	2 cut(s)	37, 442
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	34, 439
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 497, 853, 950, 959, 1182
BstNSI	RCATGY	1 cut(s)	723
BstPI	GGTNACC	1 cut(s)	1034
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	4 cut(s)	949, 1004, 1127, 1160
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	2 cut(s)	767, 1031
BstYI	RGATCY	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	1065
BsuRI	GGCC	1 cut(s)	1085
BsuTUI	ATCGAT	1 cut(s)	1065
BtsCI	GGATG	2 cut(s)	122, 1110
BtsI	GCAGTG	2 cut(s)	219, 351
BtsIMutI	CAGTG	5 cut(s)	219, 249, 284, 351, 891
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	5 cut(s)	207, 463, 928, 1261, 1297
CaiI	CAGNNNCTG	1 cut(s)	1173
Cfr13I	GGNCC	3 cut(s)	128, 145, 610
ClaI	ATCGAT	1 cut(s)	1065
Csp6I	GTAC	5 cut(s)	66, 157, 670, 900, 1279
CspCI	CAANNNNNGTGG	2 cut(s)	1241, 1276
CviAII	CATG	5 cut(s)	81, 703, 720, 967, 1025
CviQI	GTAC	5 cut(s)	66, 157, 670, 900, 1279
DdeI	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1200
DpnI	GATC	2 cut(s)	36, 441
DpnII	GATC	2 cut(s)	34, 439
Eam1104I	CTCTTC	3 cut(s)	101, 516, 1046
EarI	CTCTTC	3 cut(s)	101, 516, 1046
Ecl136II	GAGCTC	2 cut(s)	570, 737
Eco130I	CCWWGG	3 cut(s)	640, 760, 1139
Eco24I	GRGCYC	2 cut(s)	572, 739
Eco47I	GGWCC	3 cut(s)	128, 145, 610
Eco53kI	GAGCTC	2 cut(s)	570, 737
Eco57I	CTGAAG	3 cut(s)	867, 1027, 1072
Eco91I	GGTNACC	1 cut(s)	1034
EcoICRI	GAGCTC	2 cut(s)	570, 737
EcoO109I	RGGNCCY	2 cut(s)	128, 610
EcoO65I	GGTNACC	1 cut(s)	1034
EcoT14I	CCWWGG	3 cut(s)	640, 760, 1139
EcoT38I	GRGCYC	2 cut(s)	572, 739
ErhI	CCWWGG	3 cut(s)	640, 760, 1139
FaeI	CATG	5 cut(s)	84, 706, 723, 970, 1028
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	5 cut(s)	80, 702, 719, 966, 1024
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	963, 1018, 1021, 1116, 1174
FokI	GGATG	2 cut(s)	129, 1117
FriOI	GRGCYC	2 cut(s)	572, 739
Fsp4HI	GCNGC	5 cut(s)	963, 1018, 1021, 1116, 1174
FspBI	CTAG	9 cut(s)	69, 206, 216, 239, 614, 732, 903, 920, 1182
GluI	GCNGC	5 cut(s)	963, 1018, 1021, 1116, 1174
HaeIII	GGCC	1 cut(s)	1085
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	5 cut(s)	84, 706, 723, 970, 1028
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	1163
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	284, 302
Hpy188I	TCNGA	4 cut(s)	537, 567, 695, 1076
Hpy188III	TCNNGA	3 cut(s)	437, 627, 875
Hpy8I	GTNNAC	2 cut(s)	284, 302
HpyAV	CCTTC	4 cut(s)	453, 804, 932, 1096
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	9 cut(s)	166, 284, 506, 578, 788, 800, 977, 1098, 1247
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 497, 853, 950, 959, 1182
HpyF3I	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1200
Hsp92II	CATG	5 cut(s)	84, 706, 723, 970, 1028
Kzo9I	GATC	2 cut(s)	34, 439
LmnI	GCTCC	6 cut(s)	314, 647, 742, 923, 1143, 1236
Lsp1109I	GCAGC	4 cut(s)	949, 1004, 1127, 1160
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	9 cut(s)	69, 206, 216, 239, 614, 732, 903, 920, 1182
MaeIII	GTNAC	3 cut(s)	247, 1034, 1268
MalI	GATC	2 cut(s)	36, 441
MboI	GATC	2 cut(s)	34, 439
MboII	GAAGA	7 cut(s)	85, 110, 118, 503, 1033, 1064, 1067
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	4 cut(s)	286, 572, 739, 946
MluCI	AATT	6 cut(s)	447, 467, 474, 741, 765, 801
MmeI	TCCRAC	1 cut(s)	1214
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	685
MwoI	GCNNNNNNNGC	6 cut(s)	314, 497, 853, 950, 959, 1182
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	2 cut(s)	34, 439
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	5 cut(s)	84, 706, 723, 970, 1028
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	96
PciI	ACATGT	1 cut(s)	719
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	1163
PkrI	GCNGC	5 cut(s)	964, 1019, 1022, 1117, 1175
PpuMI	RGGWCCY	2 cut(s)	128, 610
PscI	ACATGT	1 cut(s)	719
Psp124BI	GAGCTC	2 cut(s)	572, 739
Psp5II	RGGWCCY	2 cut(s)	128, 610
PspEI	GGTNACC	1 cut(s)	1034
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	3 cut(s)	128, 145, 610
PspPPI	RGGWCCY	2 cut(s)	128, 610
PstNI	CAGNNNCTG	1 cut(s)	1173
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	5 cut(s)	67, 158, 671, 901, 1280
RsaNI	GTAC	5 cut(s)	66, 157, 670, 900, 1279
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	2 cut(s)	572, 739
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	5 cut(s)	963, 1018, 1021, 1116, 1174
Sau3AI	GATC	2 cut(s)	34, 439
Sau96I	GGNCC	3 cut(s)	128, 145, 610
ScaI	AGTACT	2 cut(s)	67, 158
SduI	GDGCHC	4 cut(s)	286, 572, 739, 946
SfaNI	GCATC	1 cut(s)	107
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	3 cut(s)	128, 145, 610
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	6 cut(s)	447, 467, 474, 741, 765, 801
SsiI	CCGC	2 cut(s)	518, 1021
SspMI	CTAG	9 cut(s)	69, 206, 216, 239, 614, 732, 903, 920, 1182
SstI	GAGCTC	2 cut(s)	572, 739
StyI	CCWWGG	3 cut(s)	640, 760, 1139
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	96, 781, 1065
TasI	AATT	6 cut(s)	447, 467, 474, 741, 765, 801
TatI	WGTACW	4 cut(s)	65, 156, 899, 1278
TauI	GCSGC	1 cut(s)	1023
TfiI	GAWTC	1 cut(s)	1163
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	5 cut(s)	226, 256, 291, 358, 891
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	962, 1017, 1115, 1173
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	385, 460, 719, 930, 1065
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	5 cut(s)	226, 256, 291, 358, 891
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	3 cut(s)	128, 145, 610
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	723
XspI	CTAG	9 cut(s)	69, 206, 216, 239, 614, 732, 903, 920, 1182
ZrmI	AGTACT	2 cut(s)	67, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.