MD13G1032000.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
2279043 .. 2283415
4373 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1032000.v1.1.491

Sequence Viewer

Length: 1488 bp
ATGGAAGAGAGCTTGCTATTGCCAAAATACAGAGAAGAGCAACAAAGAAGCAGTAGAAATTCAAGCAGTAGTAGTAGTTGTCTAACATGGGTTTCTTTTTTTGAAGAAGTAAAGAGGTTGGGATGCATAGCAGGACCAATGGTTGCTGTGGTTCTATCCCAGTACATGCTGCGGTTTATTTCAATGATGATGGTTGGTCACCTGGGTGAACTTGCACTCTCCAGTTCCTCCATAGCCATCTCCCTCGCCGGCGTCACCGGCTTCAGTCTTTTCTTGGGAATGGCAAGTGCACTGGAAACTTTATGTGGGCAAGCATATGGAGCTGAGCAATATCAGAAACTTGGACTTCTAACGTACACTGCTATATTTTCTCTCAACATGGTTTGTCTTCCTTTATCTTTGATATGGATATACACGGAGGAGATACTGATTTTCACCGGTCAAGACCCTGCGATTTCTCGCGAAGCCGGAAAATACACAATCTTGCTTATTCCTGGTTTATTTGCTTATGCAACTCTTCAACCGCTCATTCGATACTTTCAAACACAAAGTTTAGTAATGCCTATGCTCGTAACCTCTTTCGTCACCTTTTTATTCCATATTCCTCTCTGCTGGATTCTAATATTCAAGTCTGGATTGAAACACCTTGGAGGAGCATTAGCAATCGGCATTTCCTATTGGTTGAATGTGATTTTTCTTTGGTTATACATGAAGTTTTCCCCTGCCTGTTCAAAAACTCGTGCTCCAATTTCGAAGGATATATTCCACGGTATCGGAGAATTCTTTCGCTTTGCCCTCCCTTCTGCAGTAATGCAATGCCTTGAGTGGTGGTCGTTCGAGCTGCTTATATTTCTGTCTGGACTTTTACCAAATCCGGCTCTTGAAACTTCAGTTCTGTCTGCATGTCTTCTGGCGATTTCAACGATCTATGCAATACCCTATGCGTTTGGTGCTGCAGTAAGTACTAGAGTTTCAAATGAACTGGGAGCTGGTAACCCACAACGTGCTCGTATAGCTACTTTTGCTGCGATGTTTCTTGCAGTCGCAGAGACAAGTATAACAACCACGACCCTCTTTGCCTGCCGGAAAGTATTTGGTTACACTTTTAGCAACGAGAAAGAAGTCATCGATTACGTCACAATCATGGTTCCTCTAATTTGCCTGTCTGTCATACTAGACAGTATGCACGGGGTCCTTACAGGTATTGCTAGAGGAACTGGGTGGCAGCACATAGGGGCTTACATCAACCTTGGAGCATATTATCTTTGTGGAATCCCCGTTGCTATCGCGTTGGCTTTCTGGGTTCAGCTTAGAGGAAGGGGCCTTTGGATTGGCATACAAGTTGGTGCTTTTGTGCAAGTCAGTCTGCTCGCTTTAGTAACATGTTGTACAAATTGGGAAAAGCAGGCAAGTAAGGCAAGGGAGAGGATATTTGACAGAAGCCCCCTGGAAGTTAATGCCTTGTGTGACAAGGCAGAGAGTAATTAG

Protein Analysis

496

Amino Acids

54.55

Weight (kDa)

8.14

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 46 - 206 5.3e-33 MatE
MatE PF01554 267 - 428 3.5e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 526
AccII CGCG 2 cut(s) 462, 1289
AciI CCGC 2 cut(s) 172, 524
AcsI RAATTY 2 cut(s) 58, 779
AcuI CTGAAG 2 cut(s) 247, 873
AcyI GRCGYC 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 1004
AfaI GTAC 4 cut(s) 164, 356, 964, 1390
AflIII ACRYGT 1 cut(s) 1382
AgeI ACCGGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 201, 493, 1446
AjuI GAANNNNNNNTTGG 2 cut(s) 1309, 1341
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 6 cut(s) 12, 323, 841, 989, 1016, 1309
AluI AGCT 6 cut(s) 12, 323, 841, 989, 1016, 1309
Alw21I GWGCWC 3 cut(s) 292, 745, 1009
Alw26I GTCTC 1 cut(s) 1043
Alw44I GTGCAC 1 cut(s) 288
AoxI GGCC 1 cut(s) 1321
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 5 cut(s) 169, 841, 953, 1025, 1225
ApoI RAATTY 2 cut(s) 58, 779
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 783
AspS9I GGNCC 3 cut(s) 134, 1192, 1321
AsuHPI GGTGA 5 cut(s) 191, 218, 247, 427, 577
AsuII TTCGAA 1 cut(s) 752
AvaII GGWCC 2 cut(s) 134, 1192
BaeGI GKGCMC 1 cut(s) 292
BauI CACGAG 1 cut(s) 738
BbsI GAAGAC 2 cut(s) 380, 899
Bbv12I GWGCWC 3 cut(s) 292, 745, 1009
BbvI GCAGC 5 cut(s) 156, 828, 940, 1012, 1237
BccI CCATC 2 cut(s) 184, 245
BciT130I CCWGG 3 cut(s) 203, 495, 1448
BcoDI GTCTC 1 cut(s) 1043
BfaI CTAG 3 cut(s) 966, 1175, 1209
BfmI CTRYAG 2 cut(s) 804, 954
BisI GCNGC 5 cut(s) 170, 842, 954, 1026, 1226
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 5 cut(s) 171, 843, 955, 1027, 1227
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 3 cut(s) 203, 495, 1448
Bme18I GGWCC 2 cut(s) 134, 1192
BmgT120I GGNCC 3 cut(s) 134, 1192, 1321
BmiI GGNNCC 3 cut(s) 1149, 1193, 1322
BmrFI CCNGG 3 cut(s) 203, 495, 1448
BmrI ACTGGG 3 cut(s) 154, 992, 1227
BmsI GCATC 1 cut(s) 113
BmuI ACTGGG 3 cut(s) 154, 992, 1227
BpiI GAAGAC 2 cut(s) 380, 899
BpmI CTGGAG 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 842
Bsa29I ATCGAT 1 cut(s) 1128
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 5 cut(s) 202, 646, 766, 1249, 1446
BsaWI WCCGGW 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bse118I RCCGGY 3 cut(s) 248, 257, 437
Bse1I ACTGG 5 cut(s) 160, 222, 297, 987, 1222
Bse3DI GCAATG 1 cut(s) 821
BseBI CCWGG 3 cut(s) 203, 495, 1448
BseCI ATCGAT 1 cut(s) 1128
BseDI CCNNGG 5 cut(s) 202, 646, 766, 1249, 1446
BseGI GGATG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 5 cut(s) 160, 222, 297, 987, 1222
BseRI GAGGAG 2 cut(s) 434, 666
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 5 cut(s) 156, 828, 940, 1012, 1237
Bsh1236I CGCG 2 cut(s) 462, 1289
BshFI GGCC 1 cut(s) 1323
BshTI ACCGGT 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 1128
BsiHKAI GWGCWC 3 cut(s) 292, 745, 1009
BsiSI CCGG 6 cut(s) 249, 258, 438, 468, 875, 1084
BsmAI GTCTC 1 cut(s) 1043
BsnI GGCC 1 cut(s) 1323
Bsp119I TTCGAA 1 cut(s) 752
Bsp1286I GDGCHC 3 cut(s) 292, 745, 1009
Bsp1407I TGTACA 1 cut(s) 1388
Bsp143I GATC 1 cut(s) 924
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp68I TCGCGA 1 cut(s) 462
BspACI CCGC 2 cut(s) 172, 524
BspANI GGCC 1 cut(s) 1323
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 1128
BspFNI CGCG 2 cut(s) 462, 1289
BspLI GGNNCC 3 cut(s) 1149, 1193, 1322
BspMAI CTGCAG 2 cut(s) 808, 958
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 821
BsrFI RCCGGY 3 cut(s) 248, 257, 437
BsrGI TGTACA 1 cut(s) 1388
BsrI ACTGG 5 cut(s) 160, 222, 297, 987, 1222
BssAI RCCGGY 3 cut(s) 248, 257, 437
BssECI CCNNGG 5 cut(s) 202, 646, 766, 1249, 1446
BssMI GATC 1 cut(s) 924
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 646, 1249
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 3 cut(s) 203, 495, 1448
Bst4CI ACNGT 2 cut(s) 770, 1181
Bst6I CTCTTC 2 cut(s) 30, 522
BstACI GRCGYC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 1388
BstBI TTCGAA 1 cut(s) 752
BstC8I GCNNGC 6 cut(s) 14, 250, 312, 1081, 1371, 1407
BstDEI CTNAG 2 cut(s) 324, 1310
BstDSI CCRYGG 1 cut(s) 766
BstEII GGTNACC 2 cut(s) 197, 992
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 2 cut(s) 462, 1289
BstKTI GATC 1 cut(s) 927
BstMAI GTCTC 1 cut(s) 1043
BstMBI GATC 1 cut(s) 924
BstMWI GCNNNNNNNGC 6 cut(s) 258, 320, 950, 1013, 1022, 1415
BstNI CCWGG 3 cut(s) 203, 495, 1448
BstNSI RCATGY 3 cut(s) 169, 906, 1386
BstPI GGTNACC 2 cut(s) 197, 992
BstSCI CCNGG 3 cut(s) 201, 493, 1446
BstSFI CTRYAG 2 cut(s) 804, 954
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 2 cut(s) 462, 1289
BstV1I GCAGC 5 cut(s) 156, 828, 940, 1012, 1237
BstV2I GAAGAC 2 cut(s) 380, 899
Bsu15I ATCGAT 1 cut(s) 1128
BsuRI GGCC 1 cut(s) 1323
BsuTUI ATCGAT 1 cut(s) 1128
BtgI CCRYGG 1 cut(s) 766
BtgZI GCGATG 1 cut(s) 1043
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 290, 357
BtuMI TCGCGA 1 cut(s) 462
Cac8I GCNNGC 6 cut(s) 14, 250, 312, 1081, 1371, 1407
Cfr10I RCCGGY 3 cut(s) 248, 257, 437
Cfr13I GGNCC 3 cut(s) 134, 1192, 1321
ClaI ATCGAT 1 cut(s) 1128
CseI GACGC 1 cut(s) 241
Csp6I GTAC 4 cut(s) 163, 355, 963, 1389
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 7 cut(s) 87, 166, 379, 709, 903, 1144, 1383
CviQI GTAC 4 cut(s) 163, 355, 963, 1389
DdeI CTNAG 2 cut(s) 324, 1310
DpnI GATC 1 cut(s) 926
DpnII GATC 1 cut(s) 924
DraIII CACNNNGTG 1 cut(s) 1004
Eam1104I CTCTTC 2 cut(s) 30, 522
EarI CTCTTC 2 cut(s) 30, 522
Eco130I CCWWGG 2 cut(s) 646, 1249
Eco47I GGWCC 2 cut(s) 134, 1192
Eco57I CTGAAG 2 cut(s) 247, 873
Eco91I GGTNACC 2 cut(s) 197, 992
EcoO109I RGGNCCY 2 cut(s) 1192, 1321
EcoO65I GGTNACC 2 cut(s) 197, 992
EcoRI GAATTC 1 cut(s) 779
EcoRII CCWGG 3 cut(s) 201, 493, 1446
EcoT14I CCWWGG 2 cut(s) 646, 1249
EcoT22I ATGCAT 1 cut(s) 128
ErhI CCWWGG 2 cut(s) 646, 1249
FaeI CATG 7 cut(s) 90, 169, 382, 712, 906, 1147, 1386
FatI CATG 7 cut(s) 86, 165, 378, 708, 902, 1143, 1382
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 170, 842, 954, 1026, 1226
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 170, 842, 954, 1026, 1226
FspBI CTAG 3 cut(s) 966, 1175, 1209
GluI GCNGC 5 cut(s) 170, 842, 954, 1026, 1226
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 1 cut(s) 1323
HapII CCGG 6 cut(s) 249, 258, 438, 468, 875, 1084
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 7 cut(s) 90, 169, 382, 712, 906, 1147, 1386
HinfI GANTC 2 cut(s) 616, 1272
HpaII CCGG 6 cut(s) 249, 258, 438, 468, 875, 1084
HphI GGTGA 5 cut(s) 191, 218, 247, 427, 577
Hpy166II GTNNAC 3 cut(s) 209, 290, 357
Hpy188I TCNGA 2 cut(s) 336, 776
Hpy188III TCNNGA 5 cut(s) 443, 461, 633, 858, 881
Hpy8I GTNNAC 3 cut(s) 209, 290, 357
HpyAV CCTTC 3 cut(s) 748, 810, 1311
HpyCH4III ACNGT 2 cut(s) 770, 1181
HpyCH4IV ACGT 3 cut(s) 353, 1003, 1134
HpyF10VI GCNNNNNNNGC 6 cut(s) 258, 320, 950, 1013, 1022, 1415
HpyF3I CTNAG 2 cut(s) 324, 1310
HpySE526I ACGT 3 cut(s) 353, 1003, 1134
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 7 cut(s) 90, 169, 382, 712, 906, 1147, 1386
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 924
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 5 cut(s) 320, 653, 748, 986, 1253
Lsp1109I GCAGC 5 cut(s) 156, 828, 940, 1012, 1237
LweI GCATC 1 cut(s) 113
MaeI CTAG 3 cut(s) 966, 1175, 1209
MaeII ACGT 3 cut(s) 353, 1003, 1134
MaeIII GTNAC 9 cut(s) 197, 253, 571, 583, 992, 1097, 1135, 1378, 1466
MalI GATC 1 cut(s) 926
MbiI CCGCTC 1 cut(s) 526
MboI GATC 1 cut(s) 924
MboII GAAGA 6 cut(s) 17, 47, 116, 380, 509, 899
MhlI GDGCHC 3 cut(s) 292, 745, 1009
MluCI AATT 6 cut(s) 58, 747, 779, 1155, 1393, 1483
Mph1103I ATGCAT 1 cut(s) 128
MreI CGCCGGCG 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 1 cut(s) 1455
MslI CAYNNNNRTG 2 cut(s) 204, 1142
MspI CCGG 6 cut(s) 249, 258, 438, 468, 875, 1084
MspR9I CCNGG 3 cut(s) 203, 495, 1448
MvaI CCWGG 3 cut(s) 203, 495, 1448
MvnI CGCG 2 cut(s) 462, 1289
MwoI GCNNNNNNNGC 6 cut(s) 258, 320, 950, 1013, 1022, 1415
NaeI GCCGGC 1 cut(s) 250
NdeI CATATG 1 cut(s) 316
NdeII GATC 1 cut(s) 924
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 7 cut(s) 90, 169, 382, 712, 906, 1147, 1386
NlaIV GGNNCC 3 cut(s) 1149, 1193, 1322
NmuCI GTSAC 5 cut(s) 197, 253, 583, 1135, 1466
NruI TCGCGA 1 cut(s) 462
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 3 cut(s) 169, 906, 1386
NspV TTCGAA 1 cut(s) 752
OliI CACNNNNGTG 1 cut(s) 204
PciI ACATGT 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 616, 1272
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 5 cut(s) 171, 843, 955, 1027, 1227
PpuMI RGGWCCY 1 cut(s) 1192
PscI ACATGT 1 cut(s) 1382
Psp5II RGGWCCY 1 cut(s) 1192
Psp6I CCWGG 3 cut(s) 201, 493, 1446
PspEI GGTNACC 2 cut(s) 197, 992
PspGI CCWGG 3 cut(s) 201, 493, 1446
PspN4I GGNNCC 3 cut(s) 1149, 1193, 1322
PspPI GGNCC 3 cut(s) 134, 1192, 1321
PspPPI RGGWCCY 1 cut(s) 1192
PstI CTGCAG 2 cut(s) 808, 958
RruI TCGCGA 1 cut(s) 462
RsaI GTAC 4 cut(s) 164, 356, 964, 1390
RsaNI GTAC 4 cut(s) 163, 355, 963, 1389
RseI CAYNNNNRTG 2 cut(s) 204, 1142
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 1455
SatI GCNGC 5 cut(s) 170, 842, 954, 1026, 1226
Sau3AI GATC 1 cut(s) 924
Sau96I GGNCC 3 cut(s) 134, 1192, 1321
ScaI AGTACT 1 cut(s) 964
ScrFI CCNGG 3 cut(s) 203, 495, 1448
SduI GDGCHC 3 cut(s) 292, 745, 1009
SfaNI GCATC 1 cut(s) 113
SfcI CTRYAG 2 cut(s) 804, 954
SfuI TTCGAA 1 cut(s) 752
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 2 cut(s) 134, 1192
SmiMI CAYNNNNRTG 2 cut(s) 204, 1142
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 6 cut(s) 58, 747, 779, 1155, 1393, 1483
SsiI CCGC 2 cut(s) 172, 524
SspI AATATT 1 cut(s) 624
SspMI CTAG 3 cut(s) 966, 1175, 1209
StyD4I CCNGG 3 cut(s) 201, 493, 1446
StyI CCWWGG 2 cut(s) 646, 1249
TaaI ACNGT 2 cut(s) 770, 1181
TaiI ACGT 3 cut(s) 356, 1006, 1137
TaqI TCGA 4 cut(s) 532, 752, 837, 1128
TasI AATT 6 cut(s) 58, 747, 779, 1155, 1393, 1483
TatI WGTACW 3 cut(s) 162, 962, 1388
TfiI GAWTC 2 cut(s) 616, 1272
Tru1I TTAA 1 cut(s) 1455
Tru9I TTAA 1 cut(s) 1455
TscAI CASTG 2 cut(s) 297, 364
TseFI GTSAC 5 cut(s) 197, 253, 583, 1135, 1466
TseI GCWGC 5 cut(s) 169, 841, 953, 1025, 1225
Tsp45I GTSAC 5 cut(s) 197, 253, 583, 1135, 1466
TspDTI ATGAA 2 cut(s) 725, 993
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 2 cut(s) 297, 364
VneI GTGCAC 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 134, 1192
XapI RAATTY 2 cut(s) 58, 779
XceI RCATGY 3 cut(s) 169, 906, 1386
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 3 cut(s) 966, 1175, 1209
ZrmI AGTACT 1 cut(s) 964
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.