FvH4_4g26362

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27776602 .. 27788406
11805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26362.t5

Sequence Viewer

Length: 1458 bp
ATGGAGGAGGGATTGTTATTGCCAAGAGGCAAAGATCAAGTTGAGCAAAGAAAAGGGTCAACTAGTCTAACATGGTTTTCGTTCTTGGAAGAAGTGAAGAGGTTGGGATGCATAGCAGGACCTATGGTTGTCGTGGTTCTATCCCAGTACTTGGTGCAGGTCGTTTCAACCATGATGGTTGGTCACCTTGGTGAGCTAGCTCTCTCTAGCACTGCCATTGCCACCTCTCTTGCTACTGTCACTGCCTTTAGTCTTTTGTTAGGAATGGCTAGTGCACTGGAAACTTTATGTGGGCAAGCTTATGGAGCTGAGCAATATCAAAAACTTGGACTTCAGACTTACACTGCTATATTTTCTCTCAACTTGGTTTGTCTTCCTATATCTTTCATATGGTTCTATGTGGAGGACTTACTGATTTTTATGGGTCAAGATCCTTCTATTTCTCATGAAGCTGGCAAATTCATAATTTGGCTTATTCCGGCTCTGTTTGCTTATGCAACTCTTCAACCGCTGAATAGATACTTTCAGACACAAAGTTTGATACTTCCTATGCTTATGAGCTCTTGTGCAGCCCTATTGTTCCACATTCCTATCTGTTGGGTCCTCGTATTCAAATCTGGACTGGATAACATTGGAGGAGCATTGGCAATGAGTATTTCGTACTGGTTAAATGCGATTTTTCTAGGATTATACATGAAGTTCTCTTCTACATGTTCAAAAACTAGAGCTCCAATTTCTAAGGAGGTATTCCAAGGAATTGGGGAGTTCTTTCGCTTTGCCGTCCCTTCTGCAGTAATGATATGCCTTGAGTGGTGGTCATTTGAGGTGCTTATCTTGCTGTGCGGGCTTTTACCAAATCCTGCTCTTGAAACTTCGTTGTTGTCTGTATGTCTGCAGACCATTTCGACACTCTATTCAATACCATATGGATTTGGTGCGGCAGCAAGCACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCTGAAGGTGCTCGTATAGCTACTTGCGCTGCCATGTTTCTTGCAGCTGCAGAGACGAGTATAGTAGCTACAACCCTCTTTTGCTGCCGGTATATATTTGGTTACCTATTCAGCAATGAGGAAGAAGTTGTCGATTATGTCAGTACAATGGCTCCTCTAGTTTGCCTCTCTGTAATACTAGACAGCTTCCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATCTATGTGGGATTCCAGTTGCTGCTACATTGGGTTTCTGGTTACAACTAAGAGGAAAGGGCCTTTGGATTGGAATACAAGTCGGTGCTTTTGTGCAAGTCACTCTGCTTGCTTTTGTAACAACTTGTACAAACTGGGAAAAACAGTCAAGTACGGCAAGGGAGCGGATATTTGAGGGAAACACTCCAGTTGATAAGGGATTAGAGTACTAA

Protein Analysis

486

Amino Acids

52.91

Weight (kDa)

5.27

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 201 9.4e-34 MatE
MatE PF01554 262 - 424 5.8e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 1411
AciI CCGC 4 cut(s) 509, 843, 938, 1411
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 317, 1005
AfaI GTAC 6 cut(s) 149, 662, 1126, 1375, 1399, 1454
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 7 cut(s) 168, 506, 613, 717, 869, 918, 960
AhlI ACTAGT 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 1294, 1326
AleI CACNNNNGTG 1 cut(s) 189
Alw21I GWGCWC 4 cut(s) 277, 563, 730, 994
Alw26I GTCTC 1 cut(s) 1028
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 1268
AoxI GGCC 1 cut(s) 1306
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 8 cut(s) 569, 941, 1010, 1025, 1028, 1065, 1210, 1268
ApoI RAATTY 1 cut(s) 458
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 4 cut(s) 119, 601, 1177, 1306
AsuHPI GGTGA 2 cut(s) 176, 203
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 3 cut(s) 119, 601, 1177
BaeGI GKGCMC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 563, 730
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 4 cut(s) 277, 563, 730, 994
BbvI GCAGC 8 cut(s) 581, 953, 997, 1015, 1037, 1052, 1222, 1255
BccI CCATC 1 cut(s) 169
BceAI ACGGC 2 cut(s) 764, 1416
BcoDI GTCTC 1 cut(s) 1028
BcuI ACTAGT 1 cut(s) 62
BfmI CTRYAG 3 cut(s) 789, 893, 1029
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 9 cut(s) 570, 939, 942, 1011, 1026, 1029, 1066, 1211, 1269
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 9 cut(s) 571, 940, 943, 1012, 1027, 1030, 1067, 1212, 1270
BmcAI AGTACT 2 cut(s) 149, 1454
Bme18I GGWCC 3 cut(s) 119, 601, 1177
BmgT120I GGNCC 4 cut(s) 119, 601, 1177, 1306
BmiI GGNNCC 3 cut(s) 602, 1134, 1178
BmrI ACTGGG 2 cut(s) 139, 1390
BmsI GCATC 1 cut(s) 98
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 2 cut(s) 139, 1390
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 1416
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 827
BsaJI CCNNGG 4 cut(s) 187, 751, 1171, 1234
BsaXI ACNNNNNCTCC 5 cut(s) 29, 712, 742, 1117, 1147
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 1068
Bse1I ACTGG 7 cut(s) 145, 282, 627, 668, 1262, 1385, 1433
Bse3DI GCAATG 3 cut(s) 216, 654, 1102
BseDI CCNNGG 4 cut(s) 187, 751, 1171, 1234
BseGI GGATG 2 cut(s) 113, 1205
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 3 cut(s) 216, 654, 1102
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 7 cut(s) 145, 282, 627, 668, 1262, 1385, 1433
BseRI GAGGAG 3 cut(s) 20, 651, 1125
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 8 cut(s) 581, 953, 997, 1015, 1037, 1052, 1222, 1255
BsgI GTGCAG 2 cut(s) 176, 588
BshFI GGCC 1 cut(s) 1308
BsiHKAI GWGCWC 4 cut(s) 277, 563, 730, 994
BsiSI CCGG 2 cut(s) 479, 1069
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 1028
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 1 cut(s) 1308
Bsp1286I GDGCHC 4 cut(s) 277, 563, 730, 994
Bsp1407I TGTACA 1 cut(s) 1373
Bsp143I GATC 2 cut(s) 34, 430
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 4 cut(s) 509, 843, 938, 1411
BspANI GGCC 1 cut(s) 1308
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 602, 1134, 1178
BspMAI CTGCAG 3 cut(s) 793, 897, 1033
BspMI ACCTGC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 1411
BsrDI GCAATG 3 cut(s) 216, 654, 1102
BsrFI RCCGGY 1 cut(s) 1068
BsrGI TGTACA 1 cut(s) 1373
BsrI ACTGG 7 cut(s) 145, 282, 627, 668, 1262, 1385, 1433
BssAI RCCGGY 1 cut(s) 1068
BssECI CCNNGG 4 cut(s) 187, 751, 1171, 1234
BssMI GATC 2 cut(s) 34, 430
BssT1I CCWWGG 4 cut(s) 187, 751, 1171, 1234
Bst4CI ACNGT 2 cut(s) 238, 1392
Bst6I CTCTTC 3 cut(s) 92, 507, 709
BstAUI TGTACA 1 cut(s) 1373
BstC8I GCNNGC 7 cut(s) 198, 297, 454, 845, 946, 976, 1356
BstDEI CTNAG 3 cut(s) 309, 738, 1295
BstEII GGTNACC 2 cut(s) 182, 1082
BstF5I GGATG 2 cut(s) 113, 1205
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 2 cut(s) 37, 433
BstMAI GTCTC 1 cut(s) 1028
BstMBI GATC 2 cut(s) 34, 430
BstMWI GCNNNNNNNGC 6 cut(s) 305, 488, 835, 844, 998, 1007
BstNSI RCATGY 1 cut(s) 714
BstPI GGTNACC 2 cut(s) 182, 1082
BstSFI CTRYAG 3 cut(s) 789, 893, 1029
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 8 cut(s) 581, 953, 997, 1015, 1037, 1052, 1222, 1255
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 758
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 1308
BtsCI GGATG 2 cut(s) 113, 1205
BtsI GCAGTG 3 cut(s) 210, 240, 342
BtsIMutI CAGTG 4 cut(s) 210, 240, 275, 342
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 7 cut(s) 198, 297, 454, 845, 946, 976, 1356
CaiI CAGNNNCTG 1 cut(s) 1268
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 1010
Cfr10I RCCGGY 1 cut(s) 1068
Cfr13I GGNCC 4 cut(s) 119, 601, 1177, 1306
Csp6I GTAC 6 cut(s) 148, 661, 1125, 1374, 1398, 1453
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 6 cut(s) 72, 172, 446, 694, 711, 1015
CviQI GTAC 6 cut(s) 148, 661, 1125, 1374, 1398, 1453
DdeI CTNAG 3 cut(s) 309, 738, 1295
DpnI GATC 2 cut(s) 36, 432
DpnII GATC 2 cut(s) 34, 430
Eam1104I CTCTTC 3 cut(s) 92, 507, 709
EarI CTCTTC 3 cut(s) 92, 507, 709
Ecl136II GAGCTC 2 cut(s) 561, 728
Eco130I CCWWGG 4 cut(s) 187, 751, 1171, 1234
Eco24I GRGCYC 2 cut(s) 563, 730
Eco47I GGWCC 3 cut(s) 119, 601, 1177
Eco53kI GAGCTC 2 cut(s) 561, 728
Eco57I CTGAAG 2 cut(s) 317, 1005
Eco91I GGTNACC 2 cut(s) 182, 1082
EcoICRI GAGCTC 2 cut(s) 561, 728
EcoO109I RGGNCCY 4 cut(s) 119, 601, 1177, 1306
EcoO65I GGTNACC 2 cut(s) 182, 1082
EcoT14I CCWWGG 4 cut(s) 187, 751, 1171, 1234
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 563, 730
ErhI CCWWGG 4 cut(s) 187, 751, 1171, 1234
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 6 cut(s) 75, 175, 449, 697, 714, 1018
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FaqI GGGAC 1 cut(s) 767
FatI CATG 6 cut(s) 71, 171, 445, 693, 710, 1014
FauI CCCGC 1 cut(s) 836
FauNDI CATATG 2 cut(s) 389, 925
Fnu4HI GCNGC 9 cut(s) 570, 939, 942, 1011, 1026, 1029, 1066, 1211, 1269
FokI GGATG 2 cut(s) 120, 1212
FriOI GRGCYC 2 cut(s) 563, 730
Fsp4HI GCNGC 9 cut(s) 570, 939, 942, 1011, 1026, 1029, 1066, 1211, 1269
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 9 cut(s) 570, 939, 942, 1011, 1026, 1029, 1066, 1211, 1269
GsuI CTGGAG 1 cut(s) 1416
HaeIII GGCC 1 cut(s) 1308
HapII CCGG 2 cut(s) 479, 1069
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 6 cut(s) 75, 175, 449, 697, 714, 1018
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 1258
HpaII CCGG 2 cut(s) 479, 1069
HphI GGTGA 2 cut(s) 176, 203
Hpy166II GTNNAC 2 cut(s) 60, 275
Hpy188I TCNGA 2 cut(s) 336, 528
Hpy188III TCNNGA 4 cut(s) 428, 446, 618, 866
Hpy8I GTNNAC 2 cut(s) 60, 275
HpyAV CCTTC 3 cut(s) 444, 795, 980
HpyCH4III ACNGT 2 cut(s) 238, 1392
HpyF10VI GCNNNNNNNGC 6 cut(s) 305, 488, 835, 844, 998, 1007
HpyF3I CTNAG 3 cut(s) 309, 738, 1295
Hsp92II CATG 6 cut(s) 75, 175, 449, 697, 714, 1018
HspAI GCGC 1 cut(s) 1008
Kzo9I GATC 2 cut(s) 34, 430
LmnI GCTCC 7 cut(s) 305, 638, 733, 971, 1138, 1238, 1408
Lsp1109I GCAGC 8 cut(s) 581, 953, 997, 1015, 1037, 1052, 1222, 1255
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 6 cut(s) 182, 238, 1082, 1287, 1345, 1363
MalI GATC 2 cut(s) 36, 432
MbiI CCGCTC 1 cut(s) 1411
MboI GATC 2 cut(s) 34, 430
MboII GAAGA 6 cut(s) 101, 109, 365, 494, 696, 1115
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 4 cut(s) 277, 563, 730, 994
MluCI AATT 4 cut(s) 458, 465, 732, 756
Mph1103I ATGCAT 1 cut(s) 113
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 511, 1028
MspI CCGG 2 cut(s) 479, 1069
MwoI GCNNNNNNNGC 6 cut(s) 305, 488, 835, 844, 998, 1007
NdeI CATATG 2 cut(s) 389, 925
NdeII GATC 2 cut(s) 34, 430
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 6 cut(s) 75, 175, 449, 697, 714, 1018
NlaIV GGNNCC 3 cut(s) 602, 1134, 1178
NmuCI GTSAC 3 cut(s) 182, 238, 1345
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 1 cut(s) 714
OliI CACNNNNGTG 1 cut(s) 189
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 710
PfeI GAWTC 1 cut(s) 1258
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 9 cut(s) 571, 940, 943, 1012, 1027, 1030, 1067, 1212, 1270
PpuMI RGGWCCY 3 cut(s) 119, 601, 1177
PscI ACATGT 1 cut(s) 710
Psp124BI GAGCTC 2 cut(s) 563, 730
Psp5II RGGWCCY 3 cut(s) 119, 601, 1177
PspEI GGTNACC 2 cut(s) 182, 1082
PspN4I GGNNCC 3 cut(s) 602, 1134, 1178
PspPI GGNCC 4 cut(s) 119, 601, 1177, 1306
PspPPI RGGWCCY 3 cut(s) 119, 601, 1177
PstI CTGCAG 3 cut(s) 793, 897, 1033
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 6 cut(s) 149, 662, 1126, 1375, 1399, 1454
RsaNI GTAC 6 cut(s) 148, 661, 1125, 1374, 1398, 1453
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 563, 730
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 9 cut(s) 570, 939, 942, 1011, 1026, 1029, 1066, 1211, 1269
Sau3AI GATC 2 cut(s) 34, 430
Sau96I GGNCC 4 cut(s) 119, 601, 1177, 1306
ScaI AGTACT 2 cut(s) 149, 1454
SduI GDGCHC 4 cut(s) 277, 563, 730, 994
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 3 cut(s) 789, 893, 1029
SinI GGWCC 3 cut(s) 119, 601, 1177
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 458, 465, 732, 756
SsiI CCGC 4 cut(s) 509, 843, 938, 1411
SstI GAGCTC 2 cut(s) 563, 730
StyI CCWWGG 4 cut(s) 187, 751, 1171, 1234
TaaI ACNGT 2 cut(s) 238, 1392
TaqI TCGA 2 cut(s) 905, 1113
TasI AATT 4 cut(s) 458, 465, 732, 756
TatI WGTACW 4 cut(s) 147, 1124, 1373, 1452
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 1 cut(s) 1258
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 4 cut(s) 217, 247, 282, 349
TseFI GTSAC 3 cut(s) 182, 238, 1345
TseI GCWGC 8 cut(s) 569, 941, 1010, 1025, 1028, 1065, 1210, 1268
Tsp45I GTSAC 3 cut(s) 182, 238, 1345
TspDTI ATGAA 5 cut(s) 376, 451, 462, 710, 978
TspRI CASTG 4 cut(s) 217, 247, 282, 349
Van91I CCANNNNNTGG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 3 cut(s) 119, 601, 1177
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 714
ZrmI AGTACT 2 cut(s) 149, 1454
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.