Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

55102586 .. 55105287

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGAGGAGGGATTGTTATTGCCAAGAGGCAAAGATCAAGTAGAGCAAAGAAAAGGGTCAAGTAGTACTAGTAGTCTAACATGGTTTTCGTTCTTCGAAGAAGTGAAGAGGTTGGGATGCTTAGCAGGACCTATGGTTGCTGTGGTCCTATCCCAGTACTTGTTGCAGGTCGTTTCAACGATGATGGTTGGTCATCTTGGTGAGCTAGCTCTCTCTAGCACTGCCATAGCCACCTCTCTAGCTACTGTCACTGGCTTTAGTCTTTTTTTAGGAATGGCTAGTGCACTGGAAACCTTATGTGGACAAGCTTATGGAGCTGAGCAATATCAAAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGTCTTCCTATATCTTTCATATGGTTTTATGTGGAGGACTTGCTGATTTTGATTGGTCAAGATCCTTCAATTTCTCATCAAGCTGGCAAATTCATAATTTGGCTCATTCCGGCTCTTTTTGCTTATGCAACTCTTCAACCGCTGAATAGATACTTTCAGACACAAAGTTTACTACTTCCTATGCTTCTGAGCTCTTGTGCAACCCTTATGCTCCACATTCCTCTCTGTTGGGTCCTAGTATTCAAATCTGGACTGGATAACCTTGGAGGAGCATTGGCAATGAGTATTTCGTACTGGTTGAATGCGATTTTGCTCGGATTATACATGAAGTTCTCTCCTACATGTTCAAAAACTAGAGCTCCAATTTCTAAGGAGGTATTCCAAGGAATTGGAGAGTTCTTTCGATTTGCAGTCCCTTCTGCAATTATGTTATGCCTTGAGTGGTGGTCATTTGAGCTTCTCATCTTGCTGTGTGGGCTTTTACCAAATCCTGCTCTTGAAACTTCAGTGTTGTCTGTATGTCTGCAGACCATTTCGACACTCTATTCAATACCCTATGGATTTGGAGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCTGAAGGTGCTCGTATAGCTACTTGTGCTGCCATGTTTCTTACAGTCGCAGAGACAAGTACAGTAGCCACAACCCTCTTTTGCTGCAGACATGTATTTGGCTACCTCTTCAGCAATGAGGAAGAAGTCGTCAATTATGTCAGAACAATGGCTCCTCTTGTTTGCCTCTCTGTTATACTAGACAGTTTCCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATTTATGTGGGATTCCAGTAGCTGCTACACTAGCTTTCTGGGTTCAACTAAGAGGAAGGGGTCTTTGGATTGGAATACAAGTTGGAGCTTTTGTGCAAACCACTCTGCTTGCTATTGTAACAACTTGTACAAACTGGGAAAAGCAGGCAAGTAAGGCGAGGGAGCGGATATTTGAGGGAAGCACTCTAGTTGAGAATGGATTGTGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

488

Amino Acids

53.17

Weight (kDa)

6.1

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	44 - 204	4.1e-33	MatE
MatE	PF01554	265 - 427	4.6e-31	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccBSI	CCGCTC	2 cut(s)	947, 1420
AciI	CCGC	3 cut(s)	518, 947, 1420
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	3 cut(s)	867, 1014, 1084
AfaI	GTAC	6 cut(s)	67, 158, 671, 958, 1051, 1384
AflIII	ACRYGT	2 cut(s)	719, 1081
AhlI	ACTAGT	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	1303, 1335
AloI	GAACNNNNNNTCC	2 cut(s)	1126, 1158
Alw21I	GWGCWC	4 cut(s)	286, 572, 739, 1003
Alw26I	GTCTC	1 cut(s)	1037
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	1277
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	950, 1019, 1074, 1219, 1277
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	4 cut(s)	128, 145, 610, 1186
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	4 cut(s)	128, 145, 610, 1186
BaeGI	GKGCMC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	572, 739
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	4 cut(s)	286, 572, 739, 1003
BbvI	GCAGC	5 cut(s)	962, 1006, 1061, 1231, 1264
BccI	CCATC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	1037
BcuI	ACTAGT	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	902, 1075
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	6 cut(s)	948, 951, 1020, 1075, 1220, 1278
BlpI	GCTNAGC	2 cut(s)	121, 318
BlsI	GCNGC	6 cut(s)	949, 952, 1021, 1076, 1221, 1279
BmcAI	AGTACT	3 cut(s)	67, 158, 958
Bme18I	GGWCC	4 cut(s)	128, 145, 610, 1186
BmgT120I	GGNCC	4 cut(s)	128, 145, 610, 1186
BmiI	GGNNCC	3 cut(s)	611, 1143, 1187
BmrI	ACTGGG	2 cut(s)	148, 1399
BmsI	GCATC	1 cut(s)	107
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	2 cut(s)	148, 1399
BpiI	GAAGAC	1 cut(s)	374
Bpu1102I	GCTNAGC	2 cut(s)	121, 318
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	836
BsaJI	CCNNGG	4 cut(s)	640, 760, 1180, 1243
BsaXI	ACNNNNNCTCC	7 cut(s)	29, 721, 751, 1126, 1156, 1332, 1362
Bse1I	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1271, 1394
Bse3DI	GCAATG	2 cut(s)	663, 1111
BseDI	CCNNGG	4 cut(s)	640, 760, 1180, 1243
BseGI	GGATG	2 cut(s)	122, 1214
BseMI	GCAATG	2 cut(s)	663, 1111
BseMII	CTCAG	2 cut(s)	309, 557
BseNI	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1271, 1394
BseRI	GAGGAG	3 cut(s)	20, 660, 1134
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	5 cut(s)	962, 1006, 1061, 1231, 1264
BsiHKAI	GWGCWC	4 cut(s)	286, 572, 739, 1003
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	1 cut(s)	1037
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	4 cut(s)	286, 572, 739, 1003
Bsp1407I	TGTACA	1 cut(s)	1382
Bsp143I	GATC	2 cut(s)	34, 439
Bsp1720I	GCTNAGC	2 cut(s)	121, 318
BspACI	CCGC	3 cut(s)	518, 947, 1420
BspCNI	CTCAG	2 cut(s)	310, 558
BspLI	GGNNCC	3 cut(s)	611, 1143, 1187
BspMAI	CTGCAG	2 cut(s)	906, 1079
BspMI	ACCTGC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	96
BsrBI	CCGCTC	2 cut(s)	947, 1420
BsrDI	GCAATG	2 cut(s)	663, 1111
BsrGI	TGTACA	1 cut(s)	1382
BsrI	ACTGG	7 cut(s)	154, 256, 291, 636, 677, 1271, 1394
BssECI	CCNNGG	4 cut(s)	640, 760, 1180, 1243
BssMI	GATC	2 cut(s)	34, 439
BssT1I	CCWWGG	4 cut(s)	640, 760, 1180, 1243
Bst4CI	ACNGT	4 cut(s)	247, 1036, 1054, 1175
Bst6I	CTCTTC	3 cut(s)	101, 516, 1103
BstAUI	TGTACA	1 cut(s)	1382
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	207, 463, 985, 1365, 1401
BstDEI	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1304
BstF5I	GGATG	2 cut(s)	122, 1214
BstKTI	GATC	2 cut(s)	37, 442
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	2 cut(s)	34, 439
BstMWI	GCNNNNNNNGC	7 cut(s)	314, 497, 853, 1007, 1016, 1286, 1409
BstNSI	RCATGY	2 cut(s)	723, 1085
BstSFI	CTRYAG	2 cut(s)	902, 1075
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	5 cut(s)	962, 1006, 1061, 1231, 1264
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	122, 1214
BtsI	GCAGTG	2 cut(s)	219, 351
BtsIMutI	CAGTG	5 cut(s)	219, 249, 284, 351, 891
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	5 cut(s)	207, 463, 985, 1365, 1401
CaiI	CAGNNNCTG	1 cut(s)	1277
Cfr13I	GGNCC	4 cut(s)	128, 145, 610, 1186
Csp6I	GTAC	6 cut(s)	66, 157, 670, 957, 1050, 1383
CspCI	CAANNNNNGTGG	2 cut(s)	1345, 1380
CviAII	CATG	5 cut(s)	81, 703, 720, 1024, 1082
CviQI	GTAC	6 cut(s)	66, 157, 670, 957, 1050, 1383
DdeI	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1304
DpnI	GATC	2 cut(s)	36, 441
DpnII	GATC	2 cut(s)	34, 439
Eam1104I	CTCTTC	3 cut(s)	101, 516, 1103
EarI	CTCTTC	3 cut(s)	101, 516, 1103
Ecl136II	GAGCTC	2 cut(s)	570, 737
Eco130I	CCWWGG	4 cut(s)	640, 760, 1180, 1243
Eco24I	GRGCYC	2 cut(s)	572, 739
Eco47I	GGWCC	4 cut(s)	128, 145, 610, 1186
Eco53kI	GAGCTC	2 cut(s)	570, 737
Eco57I	CTGAAG	3 cut(s)	867, 1014, 1084
EcoICRI	GAGCTC	2 cut(s)	570, 737
EcoO109I	RGGNCCY	3 cut(s)	128, 610, 1186
EcoT14I	CCWWGG	4 cut(s)	640, 760, 1180, 1243
EcoT38I	GRGCYC	2 cut(s)	572, 739
ErhI	CCWWGG	4 cut(s)	640, 760, 1180, 1243
FaeI	CATG	5 cut(s)	84, 706, 723, 1027, 1085
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	5 cut(s)	80, 702, 719, 1023, 1081
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	6 cut(s)	948, 951, 1020, 1075, 1220, 1278
FokI	GGATG	2 cut(s)	129, 1221
FriOI	GRGCYC	2 cut(s)	572, 739
Fsp4HI	GCNGC	6 cut(s)	948, 951, 1020, 1075, 1220, 1278
GluI	GCNGC	6 cut(s)	948, 951, 1020, 1075, 1220, 1278
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	5 cut(s)	84, 706, 723, 1027, 1085
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	1267
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	284, 302, 548
Hpy188I	TCNGA	4 cut(s)	537, 567, 695, 1133
Hpy188III	TCNNGA	3 cut(s)	437, 627, 875
Hpy8I	GTNNAC	3 cut(s)	284, 302, 548
HpyAV	CCTTC	4 cut(s)	453, 804, 989, 1305
HpyCH4III	ACNGT	4 cut(s)	247, 1036, 1054, 1175
HpyF10VI	GCNNNNNNNGC	7 cut(s)	314, 497, 853, 1007, 1016, 1286, 1409
HpyF3I	CTNAG	6 cut(s)	121, 318, 373, 566, 747, 1304
Hsp92II	CATG	5 cut(s)	84, 706, 723, 1027, 1085
Kzo9I	GATC	2 cut(s)	34, 439
Lsp1109I	GCAGC	5 cut(s)	962, 1006, 1061, 1231, 1264
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	247, 1372
MalI	GATC	2 cut(s)	36, 441
MbiI	CCGCTC	2 cut(s)	947, 1420
MboI	GATC	2 cut(s)	34, 439
MboII	GAAGA	7 cut(s)	85, 110, 118, 374, 503, 1090, 1124
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	4 cut(s)	286, 572, 739, 1003
MluCI	AATT	7 cut(s)	447, 467, 474, 741, 765, 801, 1123
MmeI	TCCRAC	1 cut(s)	1318
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	685
MwoI	GCNNNNNNNGC	7 cut(s)	314, 497, 853, 1007, 1016, 1286, 1409
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	2 cut(s)	34, 439
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	5 cut(s)	84, 706, 723, 1027, 1085
NlaIV	GGNNCC	3 cut(s)	611, 1143, 1187
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	2 cut(s)	723, 1085
NspV	TTCGAA	1 cut(s)	96
PciI	ACATGT	2 cut(s)	719, 1081
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	1267
PkrI	GCNGC	6 cut(s)	949, 952, 1021, 1076, 1221, 1279
PpuMI	RGGWCCY	3 cut(s)	128, 610, 1186
PscI	ACATGT	2 cut(s)	719, 1081
Psp124BI	GAGCTC	2 cut(s)	572, 739
Psp5II	RGGWCCY	3 cut(s)	128, 610, 1186
PspN4I	GGNNCC	3 cut(s)	611, 1143, 1187
PspPI	GGNCC	4 cut(s)	128, 145, 610, 1186
PspPPI	RGGWCCY	3 cut(s)	128, 610, 1186
PstI	CTGCAG	2 cut(s)	906, 1079
PstNI	CAGNNNCTG	1 cut(s)	1277
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	6 cut(s)	67, 158, 671, 958, 1051, 1384
RsaNI	GTAC	6 cut(s)	66, 157, 670, 957, 1050, 1383
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	2 cut(s)	572, 739
SatI	GCNGC	6 cut(s)	948, 951, 1020, 1075, 1220, 1278
Sau3AI	GATC	2 cut(s)	34, 439
Sau96I	GGNCC	4 cut(s)	128, 145, 610, 1186
ScaI	AGTACT	3 cut(s)	67, 158, 958
SduI	GDGCHC	4 cut(s)	286, 572, 739, 1003
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	2 cut(s)	902, 1075
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	4 cut(s)	128, 145, 610, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	7 cut(s)	447, 467, 474, 741, 765, 801, 1123
SsiI	CCGC	3 cut(s)	518, 947, 1420
SstI	GAGCTC	2 cut(s)	572, 739
StyI	CCWWGG	4 cut(s)	640, 760, 1180, 1243
TaaI	ACNGT	4 cut(s)	247, 1036, 1054, 1175
TaqI	TCGA	3 cut(s)	96, 781, 914
TasI	AATT	7 cut(s)	447, 467, 474, 741, 765, 801, 1123
TatI	WGTACW	5 cut(s)	65, 156, 956, 1049, 1382
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	1 cut(s)	1267
TscAI	CASTG	5 cut(s)	226, 256, 291, 358, 891
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	5 cut(s)	950, 1019, 1074, 1219, 1277
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	385, 460, 719, 987
TspRI	CASTG	5 cut(s)	226, 256, 291, 358, 891
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	4 cut(s)	128, 145, 610, 1186
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	2 cut(s)	723, 1085
ZrmI	AGTACT	3 cut(s)	67, 158, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.