Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

63909476 .. 63912670

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG327800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAGATTACAGATTAAATTGAATAAAGATGAACCTTTGCAGTTACGAAATTATACTTATTCTGGGTATCTGCTTCCAGTGATTAAACAGATTTGTAACTTGCTATTTAAACAGTTAGGAATGGCTAGTGCACTGGAAACCTTATGTGGACAAGCTTATGGAGCTGAGCAATATCAAAAACTTGGACTTCAAACTTACACTGCTATATTTTCTCTCAACTTAGTTTGTCTTCCTATATCTTTCATATGGTTTTATGTGGAGGACTTGCTGATTTTGATTGGTCAAGATCCTTCAATTTCTCATCAAGCTGGCAAATTCATAATTTGGCTCATTCCGGCTCTTTTTGCTTATGCAACTCTTCAACCGCTGAATAGATACTTTCAGACACAAAGTTTAATACTTCCTATGCTTCTGAGCTCTTGTGCAACCCTTTTGTTCCACATTCCTCTCTGTTGGGTCCTAGTATTCAAATCTGGACTGGATAACCTTGGAGGAGCATTGGCAATGAGTATTTCGTACTGGTTGAATGCGATTTTACTCGGATTATACATGAAGTTCTCTTCTACATGTTCAAAAACTAGAGCTCCAATTTCTAAGAAGGTGTTCCAAGGAATTGGAGAGTTCTTTCAATTTGCAGTCCCTTCTGCAATTATGTTATGCCTTGAGTGGTGGTCATTTGAGCTTCTGATCTTGCTGTGTGGGCTTTTACCAAATCCTGCTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGACCATTTCGACACTCTATTCAATACCCTATGGATTTGGAGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGCAACCCCGAAGGTGCTCGTATAGCTACTTGTGCTGCCATGTTTCTTACAGTGGCAGAGACAAGTACAGTAGCCACAACCCTCTTTTGCTGCAGACATGTATTTGGTTACCTCTTCAGCAATGAGGAAGAAGTCGTCAATTATGTCAGAACAATGGCTCCTCTTGTTTGCCTCTCTGTTATACTAGACAGTTTCCAAGGGGTCCTTTCAGGTATTGCAAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCATTTTATTTATGTGGGATTCCAGTTGCTGCTACATTAGCTTTCTGGGTTCAACTAAGAGGAAGGGGTCTTTGGATTGGAATACAAGTTGGAGCTTTTGTGCAAACCACTCTGCTTGCTATTGTAACAACTTGTACAAACTGGGAAAAGCAGGCAAGTAAGGCGAGGGAGCGGATATTTGAGGGAAGCACTCTAGTTGAGAATGGATTATGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

437

Amino Acids

48.19

Weight (kDa)

8.07

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	39 - 153	3e-23	MatE
MatE	PF01554	214 - 376	3.6e-31	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	794, 1267
AciI	CCGC	3 cut(s)	365, 794, 1267
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	714, 931
AfaI	GTAC	4 cut(s)	518, 805, 898, 1231
AflIII	ACRYGT	2 cut(s)	566, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	1150, 1182
AloI	GAACNNNNNNTCC	2 cut(s)	973, 1005
Alw21I	GWGCWC	4 cut(s)	133, 419, 586, 850
Alw26I	GTCTC	2 cut(s)	752, 884
Alw44I	GTGCAC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	1124
ApaLI	GTGCAC	1 cut(s)	129
ApeKI	GCWGC	5 cut(s)	797, 866, 921, 1066, 1124
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	457, 1033
AvaII	GGWCC	2 cut(s)	457, 1033
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	419, 586
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	4 cut(s)	133, 419, 586, 850
BbvI	GCAGC	5 cut(s)	809, 853, 908, 1078, 1111
BcoDI	GTCTC	2 cut(s)	752, 884
BfaI	CTAG	7 cut(s)	126, 461, 579, 807, 824, 1016, 1289
BfmI	CTRYAG	1 cut(s)	922
BisI	GCNGC	6 cut(s)	795, 798, 867, 922, 1067, 1125
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	6 cut(s)	796, 799, 868, 923, 1068, 1126
BmcAI	AGTACT	1 cut(s)	805
Bme18I	GGWCC	2 cut(s)	457, 1033
BmgT120I	GGNCC	2 cut(s)	457, 1033
BmiI	GGNNCC	3 cut(s)	458, 990, 1034
BmrI	ACTGGG	1 cut(s)	1246
BmuI	ACTGGG	1 cut(s)	1246
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	683
BsaJI	CCNNGG	4 cut(s)	487, 607, 1027, 1090
BsaXI	ACNNNNNCTCC	6 cut(s)	568, 598, 973, 1003, 1179, 1209
Bse1I	ACTGG	7 cut(s)	77, 138, 483, 524, 1118, 1241, 1309
Bse3DI	GCAATG	2 cut(s)	510, 958
BseDI	CCNNGG	4 cut(s)	487, 607, 1027, 1090
BseGI	GGATG	1 cut(s)	1061
BseMI	GCAATG	2 cut(s)	510, 958
BseMII	CTCAG	2 cut(s)	156, 404
BseNI	ACTGG	7 cut(s)	77, 138, 483, 524, 1118, 1241, 1309
BseRI	GAGGAG	2 cut(s)	507, 981
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	5 cut(s)	809, 853, 908, 1078, 1111
BsiHKAI	GWGCWC	4 cut(s)	133, 419, 586, 850
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	752, 884
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	532
Bsp1286I	GDGCHC	4 cut(s)	133, 419, 586, 850
Bsp1407I	TGTACA	1 cut(s)	1229
Bsp143I	GATC	2 cut(s)	286, 687
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	365, 794, 1267
BspCNI	CTCAG	2 cut(s)	157, 405
BspLI	GGNNCC	3 cut(s)	458, 990, 1034
BspMAI	CTGCAG	1 cut(s)	926
BspPI	GGATC	1 cut(s)	281
BsrBI	CCGCTC	2 cut(s)	794, 1267
BsrDI	GCAATG	2 cut(s)	510, 958
BsrGI	TGTACA	1 cut(s)	1229
BsrI	ACTGG	7 cut(s)	77, 138, 483, 524, 1118, 1241, 1309
BssECI	CCNNGG	4 cut(s)	487, 607, 1027, 1090
BssMI	GATC	2 cut(s)	286, 687
BssT1I	CCWWGG	4 cut(s)	487, 607, 1027, 1090
Bst4CI	ACNGT	4 cut(s)	114, 883, 901, 1022
Bst6I	CTCTTC	3 cut(s)	363, 565, 950
BstAUI	TGTACA	1 cut(s)	1229
BstC8I	GCNNGC	4 cut(s)	310, 832, 1212, 1248
BstDEI	CTNAG	5 cut(s)	165, 220, 413, 594, 1151
BstEII	GGTNACC	1 cut(s)	938
BstF5I	GGATG	1 cut(s)	1061
BstKTI	GATC	2 cut(s)	289, 690
BstMAI	GTCTC	2 cut(s)	752, 884
BstMBI	GATC	2 cut(s)	286, 687
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 344, 700, 854, 863, 1133, 1256
BstNSI	RCATGY	2 cut(s)	570, 932
BstPI	GGTNACC	1 cut(s)	938
BstSFI	CTRYAG	1 cut(s)	922
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	809, 853, 908, 1078, 1111
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	1061
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	5 cut(s)	84, 131, 198, 738, 888
Cac8I	GCNNGC	4 cut(s)	310, 832, 1212, 1248
CaiI	CAGNNNCTG	1 cut(s)	1124
Cfr13I	GGNCC	2 cut(s)	457, 1033
Csp6I	GTAC	4 cut(s)	517, 804, 897, 1230
CspCI	CAANNNNNGTGG	2 cut(s)	1192, 1227
CviAII	CATG	4 cut(s)	550, 567, 871, 929
CviQI	GTAC	4 cut(s)	517, 804, 897, 1230
DdeI	CTNAG	5 cut(s)	165, 220, 413, 594, 1151
DpnI	GATC	2 cut(s)	288, 689
DpnII	GATC	2 cut(s)	286, 687
DraI	TTTAAA	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	363, 565, 950
EarI	CTCTTC	3 cut(s)	363, 565, 950
Ecl136II	GAGCTC	2 cut(s)	417, 584
Eco130I	CCWWGG	4 cut(s)	487, 607, 1027, 1090
Eco24I	GRGCYC	2 cut(s)	419, 586
Eco47I	GGWCC	2 cut(s)	457, 1033
Eco53kI	GAGCTC	2 cut(s)	417, 584
Eco57I	CTGAAG	2 cut(s)	714, 931
Eco91I	GGTNACC	1 cut(s)	938
EcoICRI	GAGCTC	2 cut(s)	417, 584
EcoO109I	RGGNCCY	2 cut(s)	457, 1033
EcoO65I	GGTNACC	1 cut(s)	938
EcoT14I	CCWWGG	4 cut(s)	487, 607, 1027, 1090
EcoT38I	GRGCYC	2 cut(s)	419, 586
ErhI	CCWWGG	4 cut(s)	487, 607, 1027, 1090
FaeI	CATG	4 cut(s)	553, 570, 874, 932
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	4 cut(s)	549, 566, 870, 928
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	6 cut(s)	795, 798, 867, 922, 1067, 1125
FokI	GGATG	1 cut(s)	1068
FriOI	GRGCYC	2 cut(s)	419, 586
Fsp4HI	GCNGC	6 cut(s)	795, 798, 867, 922, 1067, 1125
FspBI	CTAG	7 cut(s)	126, 461, 579, 807, 824, 1016, 1289
GluI	GCNGC	6 cut(s)	795, 798, 867, 922, 1067, 1125
GsuI	CTGGAG	1 cut(s)	734
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	4 cut(s)	553, 570, 874, 932
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	1 cut(s)	1114
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	131, 149
Hpy188I	TCNGA	5 cut(s)	384, 414, 542, 687, 980
Hpy188III	TCNNGA	4 cut(s)	284, 474, 722, 751
Hpy8I	GTNNAC	2 cut(s)	131, 149
HpyAV	CCTTC	5 cut(s)	300, 592, 651, 836, 1152
HpyCH4III	ACNGT	4 cut(s)	114, 883, 901, 1022
HpyCH4V	TGCA	9 cut(s)	40, 131, 353, 425, 635, 647, 924, 1049, 1198
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 344, 700, 854, 863, 1133, 1256
HpyF3I	CTNAG	5 cut(s)	165, 220, 413, 594, 1151
Hsp92II	CATG	4 cut(s)	553, 570, 874, 932
Kzo9I	GATC	2 cut(s)	286, 687
LmnI	GCTCC	9 cut(s)	161, 494, 589, 791, 827, 994, 1094, 1187, 1264
Lsp1109I	GCAGC	5 cut(s)	809, 853, 908, 1078, 1111
MaeI	CTAG	7 cut(s)	126, 461, 579, 807, 824, 1016, 1289
MaeIII	GTNAC	4 cut(s)	42, 95, 938, 1219
MalI	GATC	2 cut(s)	288, 689
MbiI	CCGCTC	2 cut(s)	794, 1267
MboI	GATC	2 cut(s)	286, 687
MboII	GAAGA	5 cut(s)	221, 350, 552, 937, 971
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	4 cut(s)	133, 419, 586, 850
MmeI	TCCRAC	1 cut(s)	1165
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	4 cut(s)	15, 84, 108, 395
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	532
MwoI	GCNNNNNNNGC	7 cut(s)	161, 344, 700, 854, 863, 1133, 1256
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	2 cut(s)	286, 687
NlaIII	CATG	4 cut(s)	553, 570, 874, 932
NlaIV	GGNNCC	3 cut(s)	458, 990, 1034
NspI	RCATGY	2 cut(s)	570, 932
PciI	ACATGT	2 cut(s)	566, 928
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	1114
PkrI	GCNGC	6 cut(s)	796, 799, 868, 923, 1068, 1126
PpuMI	RGGWCCY	2 cut(s)	457, 1033
PscI	ACATGT	2 cut(s)	566, 928
Psp124BI	GAGCTC	2 cut(s)	419, 586
Psp5II	RGGWCCY	2 cut(s)	457, 1033
PspEI	GGTNACC	1 cut(s)	938
PspN4I	GGNNCC	3 cut(s)	458, 990, 1034
PspPI	GGNCC	2 cut(s)	457, 1033
PspPPI	RGGWCCY	2 cut(s)	457, 1033
PstI	CTGCAG	1 cut(s)	926
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	4 cut(s)	518, 805, 898, 1231
RsaNI	GTAC	4 cut(s)	517, 804, 897, 1230
SacI	GAGCTC	2 cut(s)	419, 586
SaqAI	TTAA	4 cut(s)	15, 84, 108, 395
SatI	GCNGC	6 cut(s)	795, 798, 867, 922, 1067, 1125
Sau3AI	GATC	2 cut(s)	286, 687
Sau96I	GGNCC	2 cut(s)	457, 1033
ScaI	AGTACT	1 cut(s)	805
SduI	GDGCHC	4 cut(s)	133, 419, 586, 850
SfcI	CTRYAG	1 cut(s)	922
SinI	GGWCC	2 cut(s)	457, 1033
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SsiI	CCGC	3 cut(s)	365, 794, 1267
SspMI	CTAG	7 cut(s)	126, 461, 579, 807, 824, 1016, 1289
SstI	GAGCTC	2 cut(s)	419, 586
StyI	CCWWGG	4 cut(s)	487, 607, 1027, 1090
TaaI	ACNGT	4 cut(s)	114, 883, 901, 1022
TaqI	TCGA	1 cut(s)	761
TatI	WGTACW	3 cut(s)	803, 896, 1229
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	1 cut(s)	1114
Tru1I	TTAA	4 cut(s)	15, 84, 108, 395
Tru9I	TTAA	4 cut(s)	15, 84, 108, 395
TscAI	CASTG	5 cut(s)	84, 138, 205, 738, 888
TseI	GCWGC	5 cut(s)	797, 866, 921, 1066, 1124
TspDTI	ATGAA	5 cut(s)	45, 232, 307, 566, 834
TspRI	CASTG	5 cut(s)	84, 138, 205, 738, 888
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	457, 1033
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	570, 932
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	7 cut(s)	126, 461, 579, 807, 824, 1016, 1289
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.