Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

49891854 .. 49898327

Gene Structure 6474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG335300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTTGCCGTGAATCTATCCCAGTTCTTGTTGCAGATCGTTTCGATGATGATGGTTGGTCACCTCGGTGACCTAGCTCTCTCTAGCACCGCCATAGCCATCTCGCTAGCTAACGTCACTGGCTTTAGTCTTTTTTCAGGACTGGCTAGTGCGCTGGAAACTTTATGTGGACAAGCTTATGGAGCTGAACAATATCAGAAACATGGACTTCAAACTTACACTGCTATATTTTCTCTGAACCTAGTCTGTCTTCTTATATCTTTCATATGGTTTTATACGGAGGACTTGCTGATTTTCATGGGTCAAGATCCTTCAATTTCTCGTCAAGCTGGCAAATTCATAGTATTGCTTATTCCGGCTCTATTTGCTTGTGCAACTCTTCAACCACTCATTAGATACTTTCAGACACAAAGTTTGATACTTCCAATGCTTCTGAGCTCTTGTGTGACACTTATGTTCCATATTCCTCTCTGTTGGGTCCTAGTGTTCAAGTCTGGACTGGATAACCTTGGAGGAGCATTAGCGATGAGCATTTCCTACTGGTTGTATGCGATTCTATTGGGATTATACATGAAGTTTTCTTCTGCATGTTCAAAAACCAGAGCTCCAATTTCTAAGGAGGTGTTCCAAGGAATTGGAGAGTTCTTTCGCTTTGCCATCCCTTCTGCAGTAATGTTATGTCTTGAGTGGTGGTCATTTGAGCTGCTTATCTTGCTGTCTGGACTTTTACCAAATCCTACTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGACAATTTCGACACTCTATTCAATACCGAATGGAATTGGTGCGGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGTAACCCGGAAGGTGCTCGTATAGCTACTTGCGCTGCCATGTTTCTTACAGTCGCAGAGACGAGTACAGTAGCCATAACCCTCTTTTGCTGCCGCCAAGTATTTGGTTACCTATTTACCAATGAGGAAGAAGTAATTGATTATGTCAGAATTATGGCTCCTCTACTTTGCCTATCTGTTATACTAGACAGCTTGCAAGGGGTCCTTTCAGGTATATCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAATCTTGGGGCATATTATTTATGTGGGATTCCAGTTGCTGCTACATTGGCTTTCTTGGTACTACTAAGAGGAAGGGGGCTTTGGATAGGAATACAAGTCGGTGCTTTTGTGCAAACCACTCTGCTAGCTTTTGTGACATGTTGTACAAACTGGGAAATGCAGGCAAGTAAGGCAAGGGAGCGAATATTTGATGGAAGCTCTCCAGTTGATAATGGATTGTGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

444

Amino Acids

48.21

Weight (kDa)

5.75

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	2 - 160	2.5e-29	MatE
MatE	PF01554	221 - 383	2.9e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	90, 815, 946
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	4 cut(s)	826, 919, 1167, 1252
AflIII	ACRYGT	1 cut(s)	1244
AgsI	TTSAA	8 cut(s)	212, 315, 383, 490, 594, 746, 795, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	1171, 1203
AleI	CACNNNNGTG	1 cut(s)	66
Alw21I	GWGCWC	3 cut(s)	440, 607, 871
Alw26I	GTCTC	2 cut(s)	773, 905
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	1145
ApeKI	GCWGC	6 cut(s)	703, 818, 887, 942, 1087, 1145
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AspLEI	GCGC	2 cut(s)	154, 887
AspS9I	GGNCC	2 cut(s)	478, 1054
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	53, 80
AsuNHI	GCTAGC	2 cut(s)	106, 1231
AvaII	GGWCC	2 cut(s)	478, 1054
BanII	GRGCYC	2 cut(s)	440, 607
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	3 cut(s)	440, 607, 871
BbvI	GCAGC	6 cut(s)	690, 830, 874, 929, 1099, 1132
BccI	CCATC	4 cut(s)	46, 107, 665, 1292
BcnI	CCSGG	1 cut(s)	860
BcoDI	GTCTC	2 cut(s)	773, 905
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	8 cut(s)	704, 816, 819, 888, 943, 946, 1088, 1146
BlsI	GCNGC	8 cut(s)	705, 817, 820, 889, 944, 947, 1089, 1147
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	2 cut(s)	478, 1054
BmgT120I	GGNCC	2 cut(s)	478, 1054
BmiI	GGNNCC	3 cut(s)	479, 1011, 1055
BmrFI	CCNGG	1 cut(s)	860
BmrI	ACTGGG	2 cut(s)	16, 1267
BmtI	GCTAGC	2 cut(s)	110, 1235
BmuI	ACTGGG	2 cut(s)	16, 1267
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	2 cut(s)	755, 1293
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	64, 508, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bse1I	ACTGG	8 cut(s)	22, 124, 147, 504, 545, 1139, 1262, 1310
BseDI	CCNNGG	3 cut(s)	64, 508, 628
BseGI	GGATG	2 cut(s)	657, 1082
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	8 cut(s)	22, 124, 147, 504, 545, 1139, 1262, 1310
BseRI	GAGGAG	2 cut(s)	528, 1002
BseXI	GCAGC	6 cut(s)	690, 830, 874, 929, 1099, 1132
BsiHKAI	GWGCWC	3 cut(s)	440, 607, 871
BsiSI	CCGG	2 cut(s)	356, 860
BsmAI	GTCTC	2 cut(s)	773, 905
BsmBI	CGTCTC	1 cut(s)	905
Bsp1286I	GDGCHC	3 cut(s)	440, 607, 871
Bsp1407I	TGTACA	1 cut(s)	1250
Bsp143I	GATC	2 cut(s)	36, 307
BspACI	CCGC	3 cut(s)	90, 815, 946
BspCNI	CTCAG	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	479, 1011, 1055
BspMAI	CTGCAG	1 cut(s)	670
BspOI	GCTAGC	2 cut(s)	110, 1235
BspPI	GGATC	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	1250
BsrI	ACTGG	8 cut(s)	22, 124, 147, 504, 545, 1139, 1262, 1310
BssECI	CCNNGG	3 cut(s)	64, 508, 628
BssMI	GATC	2 cut(s)	36, 307
BssT1I	CCWWGG	2 cut(s)	508, 628
Bst4CI	ACNGT	2 cut(s)	904, 922
Bst6I	CTCTTC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	1250
BstC8I	GCNNGC	5 cut(s)	108, 331, 1046, 1233, 1269
BstDEI	CTNAG	3 cut(s)	434, 615, 1172
BstEII	GGTNACC	4 cut(s)	59, 68, 854, 959
BstF5I	GGATG	2 cut(s)	657, 1082
BstHHI	GCGC	2 cut(s)	154, 887
BstKTI	GATC	2 cut(s)	39, 310
BstMAI	GTCTC	2 cut(s)	773, 905
BstMBI	GATC	2 cut(s)	36, 307
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 365, 712, 875, 884, 1154, 1277
BstNSI	RCATGY	2 cut(s)	591, 1248
BstPI	GGTNACC	4 cut(s)	59, 68, 854, 959
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	6 cut(s)	690, 830, 874, 929, 1099, 1132
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	2 cut(s)	635, 956
BstYI	RGATCY	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	657, 1082
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	117, 219, 759
Cac8I	GCNNGC	5 cut(s)	108, 331, 1046, 1233, 1269
CaiI	CAGNNNCTG	1 cut(s)	1145
CfoI	GCGC	2 cut(s)	154, 887
Cfr13I	GGNCC	2 cut(s)	478, 1054
Csp6I	GTAC	4 cut(s)	825, 918, 1166, 1251
CviAII	CATG	6 cut(s)	203, 298, 571, 588, 892, 1245
CviQI	GTAC	4 cut(s)	825, 918, 1166, 1251
DdeI	CTNAG	3 cut(s)	434, 615, 1172
DpnI	GATC	2 cut(s)	38, 309
DpnII	GATC	2 cut(s)	36, 307
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	2 cut(s)	438, 605
Eco130I	CCWWGG	2 cut(s)	508, 628
Eco24I	GRGCYC	2 cut(s)	440, 607
Eco47I	GGWCC	2 cut(s)	478, 1054
Eco53kI	GAGCTC	2 cut(s)	438, 605
Eco57I	CTGAAG	1 cut(s)	735
Eco91I	GGTNACC	4 cut(s)	59, 68, 854, 959
EcoICRI	GAGCTC	2 cut(s)	438, 605
EcoO109I	RGGNCCY	2 cut(s)	478, 1054
EcoO65I	GGTNACC	4 cut(s)	59, 68, 854, 959
EcoT14I	CCWWGG	2 cut(s)	508, 628
EcoT38I	GRGCYC	2 cut(s)	440, 607
ErhI	CCWWGG	2 cut(s)	508, 628
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	6 cut(s)	206, 301, 574, 591, 895, 1248
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FatI	CATG	6 cut(s)	202, 297, 570, 587, 891, 1244
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	8 cut(s)	704, 816, 819, 888, 943, 946, 1088, 1146
FokI	GGATG	2 cut(s)	644, 1089
FriOI	GRGCYC	2 cut(s)	440, 607
Fsp4HI	GCNGC	8 cut(s)	704, 816, 819, 888, 943, 946, 1088, 1146
GlaI	GCGC	2 cut(s)	153, 886
GluI	GCNGC	8 cut(s)	704, 816, 819, 888, 943, 946, 1088, 1146
GsuI	CTGGAG	2 cut(s)	755, 1293
HapII	CCGG	2 cut(s)	356, 860
HhaI	GCGC	2 cut(s)	154, 887
Hin1II	CATG	6 cut(s)	206, 301, 574, 591, 895, 1248
Hin6I	GCGC	2 cut(s)	152, 885
HinP1I	GCGC	2 cut(s)	152, 885
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	13, 553, 1135
HpaII	CCGG	2 cut(s)	356, 860
HphI	GGTGA	2 cut(s)	53, 80
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	5 cut(s)	198, 237, 405, 435, 1001
Hpy188III	TCNNGA	8 cut(s)	138, 305, 495, 683, 720, 743, 772, 1071
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	321, 672, 857, 1173
HpyCH4III	ACNGT	2 cut(s)	904, 922
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	7 cut(s)	34, 374, 587, 668, 1048, 1219, 1267
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 365, 712, 875, 884, 1154, 1277
HpyF3I	CTNAG	3 cut(s)	434, 615, 1172
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	206, 301, 574, 591, 895, 1248
HspAI	GCGC	2 cut(s)	152, 885
Kzo9I	GATC	2 cut(s)	36, 307
LmnI	GCTCC	6 cut(s)	182, 515, 610, 848, 1015, 1285
Lsp1109I	GCAGC	6 cut(s)	690, 830, 874, 929, 1099, 1132
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	7 cut(s)	59, 68, 115, 445, 854, 959, 1240
MalI	GATC	2 cut(s)	38, 309
MboI	GATC	2 cut(s)	36, 307
MboII	GAAGA	4 cut(s)	242, 371, 573, 992
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	3 cut(s)	440, 607, 871
MluCI	AATT	8 cut(s)	315, 335, 609, 633, 777, 807, 987, 1002
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	356, 860
MspR9I	CCNGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	7 cut(s)	182, 365, 712, 875, 884, 1154, 1277
NciI	CCSGG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	2 cut(s)	36, 307
NheI	GCTAGC	2 cut(s)	106, 1231
NlaIII	CATG	6 cut(s)	206, 301, 574, 591, 895, 1248
NlaIV	GGNNCC	3 cut(s)	479, 1011, 1055
NmuCI	GTSAC	5 cut(s)	59, 68, 115, 445, 1240
NspI	RCATGY	2 cut(s)	591, 1248
OliI	CACNNNNGTG	1 cut(s)	66
PciI	ACATGT	1 cut(s)	1244
PfeI	GAWTC	3 cut(s)	13, 553, 1135
PkrI	GCNGC	8 cut(s)	705, 817, 820, 889, 944, 947, 1089, 1147
PpuMI	RGGWCCY	2 cut(s)	478, 1054
PscI	ACATGT	1 cut(s)	1244
Psp124BI	GAGCTC	2 cut(s)	440, 607
Psp5II	RGGWCCY	2 cut(s)	478, 1054
PspEI	GGTNACC	4 cut(s)	59, 68, 854, 959
PspN4I	GGNNCC	3 cut(s)	479, 1011, 1055
PspPI	GGNCC	2 cut(s)	478, 1054
PspPPI	RGGWCCY	2 cut(s)	478, 1054
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	4 cut(s)	826, 919, 1167, 1252
RsaNI	GTAC	4 cut(s)	825, 918, 1166, 1251
RseI	CAYNNNNRTG	1 cut(s)	66
SacI	GAGCTC	2 cut(s)	440, 607
SatI	GCNGC	8 cut(s)	704, 816, 819, 888, 943, 946, 1088, 1146
Sau3AI	GATC	2 cut(s)	36, 307
Sau96I	GGNCC	2 cut(s)	478, 1054
ScaI	AGTACT	1 cut(s)	826
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	3 cut(s)	440, 607, 871
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	2 cut(s)	478, 1054
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	8 cut(s)	315, 335, 609, 633, 777, 807, 987, 1002
SsiI	CCGC	3 cut(s)	90, 815, 946
SspI	AATATT	1 cut(s)	1293
SstI	GAGCTC	2 cut(s)	440, 607
StyD4I	CCNGG	1 cut(s)	858
StyI	CCWWGG	2 cut(s)	508, 628
TaaI	ACNGT	2 cut(s)	904, 922
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	44, 782
TasI	AATT	8 cut(s)	315, 335, 609, 633, 777, 807, 987, 1002
TatI	WGTACW	3 cut(s)	824, 917, 1250
TauI	GCSGC	2 cut(s)	818, 948
TfiI	GAWTC	3 cut(s)	13, 553, 1135
TscAI	CASTG	3 cut(s)	124, 226, 759
TseFI	GTSAC	5 cut(s)	59, 68, 115, 445, 1240
TseI	GCWGC	6 cut(s)	703, 818, 887, 942, 1087, 1145
Tsp45I	GTSAC	5 cut(s)	59, 68, 115, 445, 1240
TspDTI	ATGAA	5 cut(s)	253, 286, 328, 587, 855
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	124, 226, 759
VpaK11BI	GGWCC	2 cut(s)	478, 1054
XapI	RAATTY	1 cut(s)	335
XbaI	TCTAGA	1 cut(s)	1070
XceI	RCATGY	2 cut(s)	591, 1248
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.