Rmu_sc0004983.1_g000007

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004983.1
Physical Location & Seq
Reverse (-)
24889 .. 27104
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004983.1_g000007.1.cds

Sequence Viewer

Length: 1449 bp
atggaagagagcttgttaacattaccaaaagaagtaaaagatccaagaaaatttagtagtactagtttgacatgggcttatttctttgaagaagtgaagaggcaatgttacatagcaggacctatggttgccgtgattctatcccagaacttgttgcgtgtggtttcgatgatgatggttggtcacttgggtgagcttgctctctctagcacctccattgccatctccctctctggagtcaccggctttagtctttttataggaatggccagtgcactggaaacaatatgtgggcaagcgtatggagctaagcagtatcagaaacttggactccaaacttacactgctatagtttctctcaacttaatttgtctccctttatctttgttatggatatatatggaggacttgctgattttcatgggtcaagatcctctcatttctcgcgaagctggcaaattcacaatttggctgattcccgctctatttgcttatgcaactcttcaaccactcatcagatactttcagacacaaagtttgatgactcctatgctcctaagctcttgtgctaccctattgttccatattcctctttgttgggttctagtattcaagtctggactggatgtccttggaggggcattagcaataagtgtctcatattggttgaatgtgattttacttggattgtacatgaagttttcttctgcttgttcacaaaccagagctccagtttctaaggaagtattccatggaatgagagagttcttttaccttgccatcccttcttcaggaatgatatgcattgagtggtggtcatttgagctgcttattttgctttctgggcttctaccaaatccagctcttgaaacttcggttatgtctgtgtgtctccagaccatttcaacactctatgcaataccttatgggtttggtgctgcagcgagtactagagttgcaaatgaactgggagctggtaactcagaatgtgctcgtatagctgcgcatgttgcattgtttcttgcagtcacagagacaagcatagaaacaacaatcctctttgccttccggcgttcttttggttacacatttaccaatgagaaacaagtcgtcgattacgtcacatcaatggcacctctagtgtgtctgtctcttgtactagacagcttgcaaggggtccttacaggtattgctagaggatgtgggtggcagcatataggggcttacataaatcttggagcattttatctttgtggaattccagttgctgctatattggctttctggttagagctgagaggaagaggcctttggattggaatacaagttggttctttggtgcagaccataacgctttcttttgtaactagtagtacaaattgggaaatgcaggcaagtaaggcaagggagatggtattccagggaggatcatcagaagatattggatag

Protein Analysis

482

Amino Acids

52.77

Weight (kDa)

6.01

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 1132
AccBSI CCGCTC 1 cut(s) 482
AccII CGCG 1 cut(s) 447
AciI CCGC 1 cut(s) 480
AclWI GGATC 3 cut(s) 35, 425, 1435
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 50, 458, 1257
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 5 cut(s) 61, 692, 949, 1158, 1375
AfiI CCNNNNNNNGG 2 cut(s) 637, 791
AgsI TTSAA 6 cut(s) 89, 506, 613, 670, 869, 906
AhdI GACNNNNNGTC 1 cut(s) 626
AhlI ACTAGT 2 cut(s) 62, 1367
AjnI CCWGG 1 cut(s) 1419
AjuI GAANNNNNNNTTGG 2 cut(s) 1294, 1326
AleI CACNNNNGTG 1 cut(s) 189
Alw21I GWGCWC 3 cut(s) 277, 730, 994
Alw26I GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 3 cut(s) 35, 425, 1435
AlwNI CAGNNNCTG 1 cut(s) 1268
AoxI GGCC 2 cut(s) 267, 1306
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 6 cut(s) 826, 938, 941, 1001, 1210, 1268
ApoI RAATTY 3 cut(s) 50, 458, 1257
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspLEI GCGC 1 cut(s) 1006
AspS9I GGNCC 2 cut(s) 119, 1177
AsuHPI GGTGA 2 cut(s) 203, 232
AvaII GGWCC 2 cut(s) 119, 1177
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 730
Bbv12I GWGCWC 3 cut(s) 277, 730, 994
BbvI GCAGC 6 cut(s) 813, 925, 953, 988, 1222, 1255
BccI CCATC 4 cut(s) 169, 230, 788, 1405
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 1421
BcoDI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BcuI ACTAGT 2 cut(s) 62, 1367
BfaI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
BfmI CTRYAG 2 cut(s) 348, 939
BisI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 828, 940, 943, 1003, 1212, 1270
BmcAI AGTACT 2 cut(s) 61, 949
Bme1390I CCNGG 1 cut(s) 1421
Bme18I GGWCC 2 cut(s) 119, 1177
BmeRI GACNNNNNGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 119, 1177
BmiI GGNNCC 2 cut(s) 1134, 1178
BmrFI CCNGG 1 cut(s) 1421
BmrI ACTGGG 1 cut(s) 977
BmuI ACTGGG 1 cut(s) 977
BpmI CTGGAG 3 cut(s) 255, 714, 878
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 631, 751, 1420
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 712, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 791
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 6 cut(s) 270, 282, 627, 731, 972, 1262
Bse3DI GCAATG 2 cut(s) 110, 216
BseBI CCWGG 1 cut(s) 1421
BseDI CCNNGG 3 cut(s) 631, 751, 1420
BseGI GGATG 3 cut(s) 631, 780, 1205
BseLI CCNNNNNNNGG 2 cut(s) 637, 791
BseMI GCAATG 2 cut(s) 110, 216
BseMII CTCAG 2 cut(s) 996, 1286
BseNI ACTGG 6 cut(s) 270, 282, 627, 731, 972, 1262
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 6 cut(s) 813, 925, 953, 988, 1222, 1255
BsgI GTGCAG 1 cut(s) 1361
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 269, 1308
BshNI GGYRCC 1 cut(s) 1132
BsiHKAI GWGCWC 3 cut(s) 277, 730, 994
BsiSI CCGG 2 cut(s) 243, 1069
BslI CCNNNNNNNGG 2 cut(s) 637, 791
BsmAI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BsnI GGCC 2 cut(s) 269, 1308
Bsp1286I GDGCHC 3 cut(s) 277, 730, 994
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 3 cut(s) 40, 430, 1427
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 751
Bsp68I TCGCGA 1 cut(s) 447
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 269, 1308
BspCNI CTCAG 2 cut(s) 995, 1287
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 2 cut(s) 1134, 1178
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 3 cut(s) 35, 425, 1435
BspT107I GGYRCC 1 cut(s) 1132
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 110, 216
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 6 cut(s) 270, 282, 627, 731, 972, 1262
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 631, 751, 1420
BssMI GATC 3 cut(s) 40, 430, 1427
BssT1I CCWWGG 2 cut(s) 631, 751
Bst2UI CCWGG 1 cut(s) 1421
Bst6I CTCTTC 3 cut(s) 92, 507, 1297
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 5 cut(s) 198, 297, 454, 1169, 1392
BstDEI CTNAG 5 cut(s) 309, 557, 738, 982, 1295
BstDSI CCRYGG 1 cut(s) 751
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 631, 780, 1205
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 1006
BstKTI GATC 3 cut(s) 43, 433, 1430
BstMAI GTCTC 5 cut(s) 377, 661, 896, 1028, 1155
BstMBI GATC 3 cut(s) 40, 430, 1427
BstMWI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
BstNI CCWGG 1 cut(s) 1421
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 1419
BstSFI CTRYAG 2 cut(s) 348, 939
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 6 cut(s) 813, 925, 953, 988, 1222, 1255
BstX2I RGATCY 2 cut(s) 40, 430
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 40, 430
BsuRI GGCC 2 cut(s) 269, 1308
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 3 cut(s) 631, 780, 1205
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 275, 277, 342
BtuMI TCGCGA 1 cut(s) 447
Cac8I GCNNGC 5 cut(s) 198, 297, 454, 1169, 1392
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 119, 1177
Csp6I GTAC 5 cut(s) 60, 691, 948, 1157, 1374
CviAII CATG 5 cut(s) 72, 421, 694, 752, 1007
CviQI GTAC 5 cut(s) 60, 691, 948, 1157, 1374
DdeI CTNAG 5 cut(s) 309, 557, 738, 982, 1295
DpnI GATC 3 cut(s) 42, 432, 1429
DpnII GATC 3 cut(s) 40, 430, 1427
DriI GACNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 92, 507, 1297
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 3 cut(s) 92, 507, 1297
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 631, 751
Eco147I AGGCCT 1 cut(s) 1308
Eco24I GRGCYC 1 cut(s) 730
Eco47I GGWCC 2 cut(s) 119, 1177
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoO109I RGGNCCY 2 cut(s) 119, 1177
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 1 cut(s) 1419
EcoT14I CCWWGG 2 cut(s) 631, 751
EcoT22I ATGCAT 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 2 cut(s) 631, 751
FaeI CATG 5 cut(s) 75, 424, 697, 755, 1010
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FatI CATG 5 cut(s) 71, 420, 693, 751, 1006
FauI CCCGC 1 cut(s) 487
Fnu4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
FokI GGATG 3 cut(s) 638, 767, 1212
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
FspBI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 1 cut(s) 1005
GluI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
GsuI CTGGAG 3 cut(s) 255, 714, 878
HaeIII GGCC 2 cut(s) 269, 1308
HapII CCGG 2 cut(s) 243, 1069
HhaI GCGC 1 cut(s) 1006
Hin1II CATG 5 cut(s) 75, 424, 697, 755, 1010
Hin6I GCGC 1 cut(s) 1004
HinP1I GCGC 1 cut(s) 1004
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 5 cut(s) 136, 237, 330, 475, 544
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 2 cut(s) 243, 1069
HphI GGTGA 2 cut(s) 203, 232
Hpy166II GTNNAC 3 cut(s) 18, 275, 716
Hpy188I TCNGA 5 cut(s) 321, 518, 528, 985, 1435
Hpy188III TCNNGA 7 cut(s) 234, 428, 446, 618, 792, 866, 895
Hpy8I GTNNAC 3 cut(s) 18, 275, 716
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 2 cut(s) 795, 1075
HpyCH4IV ACGT 1 cut(s) 1119
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
HpyF3I CTNAG 5 cut(s) 309, 557, 738, 982, 1295
HpySE526I ACGT 1 cut(s) 1119
Hsp92II CATG 5 cut(s) 75, 424, 697, 755, 1010
HspAI GCGC 1 cut(s) 1004
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 3 cut(s) 40, 430, 1427
LmnI GCTCC 5 cut(s) 305, 558, 733, 971, 1238
Lsp1109I GCAGC 6 cut(s) 813, 925, 953, 988, 1222, 1255
MaeI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
MaeII ACGT 1 cut(s) 1119
MaeIII GTNAC 8 cut(s) 107, 182, 238, 977, 1027, 1082, 1120, 1363
MalI GATC 3 cut(s) 42, 432, 1429
MbiI CCGCTC 1 cut(s) 482
MboI GATC 3 cut(s) 40, 430, 1427
MboII GAAGA 8 cut(s) 17, 101, 109, 494, 696, 780, 1314, 1448
MflI RGATCY 2 cut(s) 40, 430
MhlI GDGCHC 3 cut(s) 277, 730, 994
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 3 cut(s) 246, 324, 538
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 806
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 17, 365
MslI CAYNNNNRTG 2 cut(s) 189, 1127
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 2 cut(s) 243, 1069
MspR9I CCNGG 1 cut(s) 1421
MvaI CCWGG 1 cut(s) 1421
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 9 cut(s) 305, 453, 488, 835, 844, 998, 1010, 1277, 1400
NcoI CCATGG 1 cut(s) 751
NdeII GATC 3 cut(s) 40, 430, 1427
NlaIII CATG 5 cut(s) 75, 424, 697, 755, 1010
NlaIV GGNNCC 2 cut(s) 1134, 1178
NmuCI GTSAC 4 cut(s) 182, 238, 1027, 1120
NruI TCGCGA 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 1005
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 1 cut(s) 1010
OliI CACNNNNGTG 1 cut(s) 189
PceI AGGCCT 1 cut(s) 1308
PcsI WCGNNNNNNNCGW 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 136, 475
PkrI GCNGC 6 cut(s) 828, 940, 943, 1003, 1212, 1270
PleI GAGTC 3 cut(s) 245, 324, 538
PpsI GAGTC 3 cut(s) 245, 324, 538
PpuMI RGGWCCY 2 cut(s) 119, 1177
Psp124BI GAGCTC 1 cut(s) 730
Psp5II RGGWCCY 2 cut(s) 119, 1177
Psp6I CCWGG 1 cut(s) 1419
PspGI CCWGG 1 cut(s) 1419
PspN4I GGNNCC 2 cut(s) 1134, 1178
PspPI GGNCC 2 cut(s) 119, 1177
PspPPI RGGWCCY 2 cut(s) 119, 1177
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 2 cut(s) 40, 430
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 5 cut(s) 61, 692, 949, 1158, 1375
RsaNI GTAC 5 cut(s) 60, 691, 948, 1157, 1374
RseI CAYNNNNRTG 2 cut(s) 189, 1127
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 17, 365
SatI GCNGC 6 cut(s) 827, 939, 942, 1002, 1211, 1269
Sau3AI GATC 3 cut(s) 40, 430, 1427
Sau96I GGNCC 2 cut(s) 119, 1177
ScaI AGTACT 2 cut(s) 61, 949
SchI GAGTC 3 cut(s) 246, 324, 538
ScrFI CCNGG 1 cut(s) 1421
SduI GDGCHC 3 cut(s) 277, 730, 994
SfcI CTRYAG 2 cut(s) 348, 939
SinI GGWCC 2 cut(s) 119, 1177
SmiMI CAYNNNNRTG 2 cut(s) 189, 1127
SpeI ACTAGT 2 cut(s) 62, 1367
Sse9I AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
SseBI AGGCCT 1 cut(s) 1308
SsiI CCGC 1 cut(s) 480
SspMI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 1308
StyD4I CCNGG 1 cut(s) 1419
StyI CCWWGG 2 cut(s) 631, 751
TaiI ACGT 1 cut(s) 1122
TaqI TCGA 2 cut(s) 167, 1113
TasI AATT 6 cut(s) 50, 366, 458, 465, 1257, 1378
TatI WGTACW 5 cut(s) 59, 690, 947, 1156, 1373
TfiI GAWTC 2 cut(s) 136, 475
Tru1I TTAA 2 cut(s) 17, 365
Tru9I TTAA 2 cut(s) 17, 365
TscAI CASTG 3 cut(s) 277, 282, 349
TseFI GTSAC 4 cut(s) 182, 238, 1027, 1120
TseI GCWGC 6 cut(s) 826, 938, 941, 1001, 1210, 1268
Tsp45I GTSAC 4 cut(s) 182, 238, 1027, 1120
TspDTI ATGAA 3 cut(s) 409, 710, 978
TspRI CASTG 3 cut(s) 277, 282, 349
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 119, 1177
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 3 cut(s) 50, 458, 1257
XceI RCATGY 1 cut(s) 1010
XspI CTAG 8 cut(s) 63, 207, 605, 951, 1139, 1160, 1194, 1368
ZrmI AGTACT 2 cut(s) 61, 949
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.