Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000642

Physical Location & Seq

Genomic Coordinates Forward (+)

63913103 .. 63916355

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG327900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGACTAACATGGAAGGACTGTTATTACCAAGAGGCAAAGATCAACTAGATCAAAGAAAAGGGTCATGGCGGTCGTTCTTCCAAGAAGTGAAGAGGTTGAGTTGCATAGCAGGACCTATGGTTGCCGTGAATCTATCCCAGTTCTTGTTGCAGATCGTTTCGATGATGATGGTTGGTCACCTCGGTGACCTAGCTCTCTCTAGCACCGCCATAGCCATCTCGCTAGCTAACGTCACTGGCTTTAGTCTTTTTTCAGGACTGGCTAGTGCGCTGGAAACTTTATGTGGACAAGCTTATGGAGCTGAACAATATCAGAAACATGGACTTCAAACTTACACTGCTATATTTTCTCTGAACCTAGTCTGTCTTCTTATATCTTTCATATGGTTTTATACGGAGGACTTGCTGATTTTCATGGGTCAAGATCCTTCAATTTCTCGTCAAGCTGGCAAATTCATAGTATTGCTTATTCCGGCTCTATTTGCTTGTGCAACTCTTCAACCACTCATTAGATACTTTCAGACACAAAGTTTGATACTTCCAATGCTTCTGAGCTCTTGTGTGACACTTATGTTCCATATTCCTCTCTGTTGGGTCCTAGTGTTCAATTCTGGACTGGATAACCTTGGAGGAGCATTAGCGATGAGCATTTCCTACTGGTTGTATGCGATTCTATTGGGATTATACATGAAGTTTTCTTCTGCATGTTCAAAAACCAGAGCTCCAATTTCTAAGGAGGTGTTCCAAGGAATTGGAGAGTTCTTTCGCTTTGCCATCCCTTCTGCAGTAATGTTATGTCTTGAGTGGTGGTCATTTGAGCTGCTTATCTTGCTGTCTGGACTTTTACCAAATCCTACTCTTGAAACTTCAGTGTTGTCTGTATGTCTCCAGACAATTTCGACACTCTATTCAATACCGAATGGCATTGGTGCGGCAGCAAGTACTAGAGTTTCAAATGAACTGGGAGCTGGTAACCCGGAAGGTGCTCGTATAGCTACTTGCGCTGCCATGTTTCTTACAGTCGCAGAGACGAGTACAGTAGCCATAACCCTCTTTTGCTGCCGCCAAGTATTTGGTTACCTATTTACCAATGAGGAAGAAGTAATTGATTATGTCAGAATTATGGCTCCTCTACTTTGCCTATCTGTTATACTAGACAGCTTGCAAGGGGTCCTTTCAGGTATATCTAGAGGATGTGGGTGGCAGCATATAGGGGCTTACATAAATCTTGGGGCATATTATTTATGTGGGATTCCAGTTGCTGCTACATTGGCTTTCTTGGTACTACTAAGAGGAAGGGGGCTTTGGATAGGAATACAGGTCGGTGCTTTTGTGCAAACCACCCTGCTAGCTTTTGTGACATGTTGTACAAACTGGGAAATGCAGATCGAAGCTAATAAGGCAGCTGATCTTGTTGCTGCTTGGGCTTCACGGCAGGAGTGCCCTTCAGATTGGTATCTGAACCCGCCTCCTTCCCTCTTTCACATTCTGGTTTGTGATGCTGTATCTGCTCCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

506

Amino Acids

55.21

Weight (kDa)

5.72

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	39 - 199	3.6e-30	MatE
MatE	PF01554	260 - 422	3.8e-30	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15150 AT1G15150 AT1G15160 AT1G15170 AT1G15170 AT1G15180 AT1G15180
fragaria_vesca	FvH4_4g26360 FvH4_4g26361 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362 FvH4_4g26362
malus_domestica	MD13G1031800.v1.1 MD13G1031900.v1.1 MD13G1032000.v1.1 MD16G1033900.v1.1 MD16G1034100.v1.1 MD16G1034200.v1.1 MD16G1034300.v1.1
prunus_persica	Prupe.1G320300_v2.0.a1 Prupe.1G320400_v2.0.a1 Prupe.1G320400_v2.0.a1
pyrus_communis	pycom13g02770 pycom16g02870 pycom16g02880 pycom16g02900
rosa_chinensis	RchiOBHm_Chr4g0433941 RchiOBHm_Chr4g0433951 RchiOBHm_Chr4g0433961 RchiOBHm_Chr4g0433971 RchiOBHm_Chr4g0433981 RchiOBHm_Chr4g0433991
rosa_laevigata	RLG00000006710 RLG00000006711 RLG00000006712 RLG00000006713 RLG00000006714 RLG00000006715
rosa_multiflora	Rmu_co8148826.1_g000001 Rmu_co8171710.1_g000001 Rmu_sc0000352.1_g000016 Rmu_sc0000352.1_g000017 Rmu_sc0000352.1_g000020 Rmu_sc0004983.1_g000006 Rmu_sc0004983.1_g000007 Rmu_sc0004983.1_g000008 Rmu_sc0023229.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375360 Rroxscaffold_5G00375370 Rroxscaffold_5G00375380 Rroxscaffold_5G00375390 Rroxscaffold_5G00375400
rosa_rugosa	Rorug04G0272400
rosa_samantha	Rh4AG327500 Rh4AG327600 Rh4AG327700 Rh4AG327800 Rh4AG327900 Rh4AG328000 Rh4BG334800 Rh4BG334900 Rh4BG335300 Rh4BG335400 Rh4CG350600 Rh4CG350800 Rh4CG350900 Rh4DG331700 Rh4DG331800 Rh4DG331900
rosa_wichuraiana	Rw4G028390 Rw4G028400 Rw4G028410 Rw4G028420 Rw4G028430 Rw4G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	70, 207, 932, 1063, 1466
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	852, 1431
AfaI	GTAC	4 cut(s)	943, 1036, 1284, 1369
AflIII	ACRYGT	1 cut(s)	1361
AgsI	TTSAA	8 cut(s)	329, 432, 500, 607, 711, 863, 912, 954
AjuI	GAANNNNNNNTTGG	2 cut(s)	1288, 1320
AleI	CACNNNNGTG	1 cut(s)	183
Alw21I	GWGCWC	3 cut(s)	557, 724, 988
Alw26I	GTCTC	2 cut(s)	890, 1022
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	1262
ApeKI	GCWGC	8 cut(s)	820, 935, 1004, 1059, 1204, 1262, 1403, 1418
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspLEI	GCGC	2 cut(s)	271, 1004
AspS9I	GGNCC	3 cut(s)	113, 595, 1171
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	2 cut(s)	170, 197
AsuNHI	GCTAGC	2 cut(s)	223, 1348
AvaII	GGWCC	3 cut(s)	113, 595, 1171
BaeGI	GKGCMC	1 cut(s)	1445
BanII	GRGCYC	2 cut(s)	557, 724
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	3 cut(s)	557, 724, 988
BbvI	GCAGC	8 cut(s)	807, 947, 991, 1046, 1216, 1249, 1405, 1415
BccI	CCATC	3 cut(s)	163, 224, 782
BceAI	ACGGC	2 cut(s)	110, 1448
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	2 cut(s)	890, 1022
BfmI	CTRYAG	1 cut(s)	783
BmcAI	AGTACT	1 cut(s)	943
Bme1390I	CCNGG	1 cut(s)	977
Bme18I	GGWCC	3 cut(s)	113, 595, 1171
BmgT120I	GGNCC	3 cut(s)	113, 595, 1171
BmiI	GGNNCC	3 cut(s)	596, 1128, 1172
BmrFI	CCNGG	1 cut(s)	977
BmrI	ACTGGG	3 cut(s)	133, 971, 1384
BmsI	GCATC	1 cut(s)	1489
BmtI	GCTAGC	2 cut(s)	227, 1352
BmuI	ACTGGG	3 cut(s)	133, 971, 1384
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	1 cut(s)	977
BsaBI	GATNNNNATC	1 cut(s)	1455
BsaJI	CCNNGG	3 cut(s)	181, 625, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bse1I	ACTGG	8 cut(s)	139, 241, 264, 621, 662, 966, 1256, 1379
Bse8I	GATNNNNATC	1 cut(s)	1455
BseDI	CCNNGG	3 cut(s)	181, 625, 745
BseGI	GGATG	2 cut(s)	774, 1199
BseJI	GATNNNNATC	1 cut(s)	1455
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	8 cut(s)	139, 241, 264, 621, 662, 966, 1256, 1379
BseRI	GAGGAG	2 cut(s)	645, 1119
BseSI	GKGCMC	1 cut(s)	1445
BseXI	GCAGC	8 cut(s)	807, 947, 991, 1046, 1216, 1249, 1405, 1415
Bsh1285I	CGRYCG	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	3 cut(s)	557, 724, 988
BsiSI	CCGG	2 cut(s)	473, 977
BsmAI	GTCTC	2 cut(s)	890, 1022
BsmBI	CGTCTC	1 cut(s)	1022
Bsp1286I	GDGCHC	4 cut(s)	557, 724, 988, 1445
Bsp1407I	TGTACA	1 cut(s)	1367
Bsp143I	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
BspACI	CCGC	5 cut(s)	70, 207, 932, 1063, 1466
BspCNI	CTCAG	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	596, 1128, 1172
BspMAI	CTGCAG	1 cut(s)	787
BspOI	GCTAGC	2 cut(s)	227, 1352
BspPI	GGATC	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	1367
BsrI	ACTGG	8 cut(s)	139, 241, 264, 621, 662, 966, 1256, 1379
BssECI	CCNNGG	3 cut(s)	181, 625, 745
BssMI	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
BssT1I	CCWWGG	2 cut(s)	625, 745
Bst4CI	ACNGT	3 cut(s)	21, 1021, 1039
Bst6I	CTCTTC	2 cut(s)	86, 501
BstAUI	TGTACA	1 cut(s)	1367
BstC8I	GCNNGC	4 cut(s)	225, 448, 1163, 1350
BstDEI	CTNAG	3 cut(s)	551, 732, 1289
BstEII	GGTNACC	4 cut(s)	176, 185, 971, 1076
BstF5I	GGATG	2 cut(s)	774, 1199
BstHHI	GCGC	2 cut(s)	271, 1004
BstKTI	GATC	6 cut(s)	43, 52, 156, 427, 1389, 1411
BstMAI	GTCTC	2 cut(s)	890, 1022
BstMBI	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	9 cut(s)	299, 482, 829, 992, 1001, 1271, 1400, 1424, 1508
BstNSI	RCATGY	2 cut(s)	708, 1365
BstPI	GGTNACC	4 cut(s)	176, 185, 971, 1076
BstSCI	CCNGG	1 cut(s)	975
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	1445
BstV1I	GCAGC	8 cut(s)	807, 947, 991, 1046, 1216, 1249, 1405, 1415
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	752, 1073
BstYI	RGATCY	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	656
BtsCI	GGATG	2 cut(s)	774, 1199
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	4 cut(s)	234, 336, 876, 1516
Cac8I	GCNNGC	4 cut(s)	225, 448, 1163, 1350
CaiI	CAGNNNCTG	1 cut(s)	1262
CfoI	GCGC	2 cut(s)	271, 1004
Cfr13I	GGNCC	3 cut(s)	113, 595, 1171
Csp6I	GTAC	4 cut(s)	942, 1035, 1283, 1368
CviAII	CATG	8 cut(s)	10, 66, 320, 415, 688, 705, 1009, 1362
CviQI	GTAC	4 cut(s)	942, 1035, 1283, 1368
DdeI	CTNAG	3 cut(s)	551, 732, 1289
DpnI	GATC	6 cut(s)	42, 51, 155, 426, 1388, 1410
DpnII	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
Eam1104I	CTCTTC	2 cut(s)	86, 501
EarI	CTCTTC	2 cut(s)	86, 501
Ecl136II	GAGCTC	2 cut(s)	555, 722
Eco130I	CCWWGG	2 cut(s)	625, 745
Eco24I	GRGCYC	2 cut(s)	557, 724
Eco47I	GGWCC	3 cut(s)	113, 595, 1171
Eco53kI	GAGCTC	2 cut(s)	555, 722
Eco57I	CTGAAG	2 cut(s)	852, 1431
Eco91I	GGTNACC	4 cut(s)	176, 185, 971, 1076
EcoICRI	GAGCTC	2 cut(s)	555, 722
EcoO109I	RGGNCCY	3 cut(s)	113, 595, 1171
EcoO65I	GGTNACC	4 cut(s)	176, 185, 971, 1076
EcoT14I	CCWWGG	2 cut(s)	625, 745
EcoT38I	GRGCYC	2 cut(s)	557, 724
ErhI	CCWWGG	2 cut(s)	625, 745
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	8 cut(s)	13, 69, 323, 418, 691, 708, 1012, 1365
FalI	AAGNNNNNCTT	2 cut(s)	1158, 1190
FatI	CATG	8 cut(s)	9, 65, 319, 414, 687, 704, 1008, 1361
FauI	CCCGC	1 cut(s)	1473
FauNDI	CATATG	1 cut(s)	383
FokI	GGATG	2 cut(s)	761, 1206
FriOI	GRGCYC	2 cut(s)	557, 724
GlaI	GCGC	2 cut(s)	270, 1003
GsuI	CTGGAG	1 cut(s)	872
HapII	CCGG	2 cut(s)	473, 977
HhaI	GCGC	2 cut(s)	271, 1004
Hin1II	CATG	8 cut(s)	13, 69, 323, 418, 691, 708, 1012, 1365
Hin6I	GCGC	2 cut(s)	269, 1002
HinP1I	GCGC	2 cut(s)	269, 1002
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	130, 670, 1252
HpaII	CCGG	2 cut(s)	473, 977
HphI	GGTGA	2 cut(s)	170, 197
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	7 cut(s)	315, 354, 522, 552, 1118, 1450, 1461
Hpy188III	TCNNGA	8 cut(s)	255, 422, 612, 800, 837, 860, 889, 1188
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	7 cut(s)	8, 438, 789, 974, 1290, 1455, 1482
HpyCH4III	ACNGT	3 cut(s)	21, 1021, 1039
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	8 cut(s)	105, 151, 491, 704, 785, 1165, 1336, 1384
HpyF10VI	GCNNNNNNNGC	9 cut(s)	299, 482, 829, 992, 1001, 1271, 1400, 1424, 1508
HpyF3I	CTNAG	3 cut(s)	551, 732, 1289
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	8 cut(s)	13, 69, 323, 418, 691, 708, 1012, 1365
HspAI	GCGC	2 cut(s)	269, 1002
Kzo9I	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
LmnI	GCTCC	6 cut(s)	299, 632, 727, 965, 1132, 1516
Lsp1109I	GCAGC	8 cut(s)	807, 947, 991, 1046, 1216, 1249, 1405, 1415
LweI	GCATC	1 cut(s)	1489
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	7 cut(s)	176, 185, 232, 562, 971, 1076, 1357
MalI	GATC	6 cut(s)	42, 51, 155, 426, 1388, 1410
MboI	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
MboII	GAAGA	6 cut(s)	70, 103, 359, 488, 690, 1109
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	4 cut(s)	557, 724, 988, 1445
MluCI	AATT	8 cut(s)	432, 452, 607, 726, 750, 894, 1104, 1119
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	1406
MspI	CCGG	2 cut(s)	473, 977
MspR9I	CCNGG	1 cut(s)	977
MwoI	GCNNNNNNNGC	9 cut(s)	299, 482, 829, 992, 1001, 1271, 1400, 1424, 1508
NciI	CCSGG	1 cut(s)	977
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
NheI	GCTAGC	2 cut(s)	223, 1348
NlaIII	CATG	8 cut(s)	13, 69, 323, 418, 691, 708, 1012, 1365
NlaIV	GGNNCC	3 cut(s)	596, 1128, 1172
NmuCI	GTSAC	5 cut(s)	176, 185, 232, 562, 1357
NspI	RCATGY	2 cut(s)	708, 1365
OliI	CACNNNNGTG	1 cut(s)	183
PciI	ACATGT	1 cut(s)	1361
PfeI	GAWTC	3 cut(s)	130, 670, 1252
PpuMI	RGGWCCY	3 cut(s)	113, 595, 1171
PscI	ACATGT	1 cut(s)	1361
Psp124BI	GAGCTC	2 cut(s)	557, 724
Psp5II	RGGWCCY	3 cut(s)	113, 595, 1171
PspEI	GGTNACC	4 cut(s)	176, 185, 971, 1076
PspN4I	GGNNCC	3 cut(s)	596, 1128, 1172
PspPI	GGNCC	3 cut(s)	113, 595, 1171
PspPPI	RGGWCCY	3 cut(s)	113, 595, 1171
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	1262
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	1406
RsaI	GTAC	4 cut(s)	943, 1036, 1284, 1369
RsaNI	GTAC	4 cut(s)	942, 1035, 1283, 1368
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	2 cut(s)	557, 724
Sau3AI	GATC	6 cut(s)	40, 49, 153, 424, 1386, 1408
Sau96I	GGNCC	3 cut(s)	113, 595, 1171
ScaI	AGTACT	1 cut(s)	943
ScrFI	CCNGG	1 cut(s)	977
SduI	GDGCHC	4 cut(s)	557, 724, 988, 1445
SfaNI	GCATC	1 cut(s)	1489
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	3 cut(s)	113, 595, 1171
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	8 cut(s)	432, 452, 607, 726, 750, 894, 1104, 1119
SsiI	CCGC	5 cut(s)	70, 207, 932, 1063, 1466
SstI	GAGCTC	2 cut(s)	557, 724
StyD4I	CCNGG	1 cut(s)	975
StyI	CCWWGG	2 cut(s)	625, 745
TaaI	ACNGT	3 cut(s)	21, 1021, 1039
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	161, 899, 1389
TasI	AATT	8 cut(s)	432, 452, 607, 726, 750, 894, 1104, 1119
TatI	WGTACW	3 cut(s)	941, 1034, 1367
TauI	GCSGC	2 cut(s)	935, 1065
TfiI	GAWTC	3 cut(s)	130, 670, 1252
TscAI	CASTG	3 cut(s)	241, 343, 876
TseFI	GTSAC	5 cut(s)	176, 185, 232, 562, 1357
TseI	GCWGC	8 cut(s)	820, 935, 1004, 1059, 1204, 1262, 1403, 1418
Tsp45I	GTSAC	5 cut(s)	176, 185, 232, 562, 1357
TspDTI	ATGAA	5 cut(s)	370, 403, 445, 704, 972
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	3 cut(s)	241, 343, 876
VpaK11BI	GGWCC	3 cut(s)	113, 595, 1171
XapI	RAATTY	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	1187
XceI	RCATGY	2 cut(s)	708, 1365
ZrmI	AGTACT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.