Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Forward (+)

8506968 .. 8508909

Gene Structure 1942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATCCAGCAGGAGCATCGGTGGCCAGCGCAATCGGAGGAGAAGGAGAGAAATTCGCGGTGGGGAATATTTATTCAGTGAAGGTGATCACCGGAGATGAGTTCAGAGGGATCGTCATGGCTTACGACCCCATCCCCAACTTCGTCTTTTTTGAAGAGGGTACAAAACCTAGACCTGGGCATTTGAAGAACACTCGGATGGTGAATGCGAGTTTTATTACAGGGCTTTCGTATTTAGGCAAAACTGAAGATCCACTTGATTCAGACAACTTTTCTGTTGATCTTAATGGTCTCCGAGCTAAAGAGGCACTTGCTATCAGGCAAGCGGAAGCAGATGCTGAAAGAATGGGAGTTGGTGTTACCGCTGAGGCTCAGAGCATCTTCGACGCGTTGTCTAAGACGCTTCCTGTGCAATGGGAAAACTCAGACATTCTGGTGATGAAAGAGGTACGCGTTCGTAGCCCGTATCTTTCAGATTGTGTCTTTGGAGGAACTGATGCTGCCAACAACCGAGTCAAGAAAGTGCTTGAGCTGGAAAGACGAAGGTTGCAACTCTTTGGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

5.16

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM12_LSM	PF21166	17 - 74	2.9e-07	LSM12, LSM domain
AD	PF09793	92 - 175	3.4e-23	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	59, 389, 453
AciI	CCGC	3 cut(s)	59, 326, 363
AclWI	GGATC	3 cut(s)	12, 119, 245
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	163, 450
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	2 cut(s)	387, 451
AgsI	TTSAA	2 cut(s)	155, 187
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	2 cut(s)	299, 532
AluI	AGCT	2 cut(s)	299, 532
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	12, 119, 245
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	4 cut(s)	82, 97, 214, 448
BalI	TGGCCA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	140, 193
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	177
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	4 cut(s)	26, 325, 387, 487
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	132, 204
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	3 cut(s)	357, 386, 438
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	3 cut(s)	59, 389, 453
BshFI	GGCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	4, 87, 111, 250, 280
BspACI	CCGC	3 cut(s)	59, 326, 363
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	3 cut(s)	358, 385, 437
BspFNI	CGCG	3 cut(s)	59, 389, 453
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 119, 245
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	5 cut(s)	4, 87, 111, 250, 280
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	28, 324
BstDEI	CTNAG	4 cut(s)	366, 372, 396, 424
BstF5I	GGATG	2 cut(s)	132, 204
BstFNI	CGCG	3 cut(s)	59, 389, 453
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	5 cut(s)	7, 90, 114, 253, 283
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	4, 87, 111, 250, 280
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 305, 409, 459
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	3 cut(s)	59, 389, 453
BstV1I	GCAGC	1 cut(s)	487
BstX2I	RGATCY	2 cut(s)	4, 250
BstYI	RGATCY	2 cut(s)	4, 250
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	132, 204
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	28, 324
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	2 cut(s)	395, 409
Csp6I	GTAC	2 cut(s)	162, 449
CviAII	CATG	2 cut(s)	118, 564
CviJI	RGCY	7 cut(s)	26, 122, 226, 299, 371, 462, 532
CviKI_1	RGCY	7 cut(s)	26, 122, 226, 299, 371, 462, 532
CviQI	GTAC	2 cut(s)	162, 449
DdeI	CTNAG	4 cut(s)	366, 372, 396, 424
DpnI	GATC	5 cut(s)	6, 89, 113, 252, 282
DpnII	GATC	5 cut(s)	4, 87, 111, 250, 280
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	2 cut(s)	121, 567
FaiI	YATR	2 cut(s)	119, 565
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 294, 326
FatI	CATG	2 cut(s)	117, 563
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	2 cut(s)	119, 211
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	2 cut(s)	395, 409
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	121, 567
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	260, 513
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	4 cut(s)	82, 97, 214, 448
Hpy188I	TCNGA	8 cut(s)	38, 107, 198, 265, 296, 375, 427, 475
Hpy188III	TCNNGA	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	38, 76, 537
HpyCH4V	TGCA	2 cut(s)	412, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 305, 409, 459
HpyF3I	CTNAG	4 cut(s)	366, 372, 396, 424
Hsp92II	CATG	2 cut(s)	121, 567
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	4, 87, 111, 250, 280
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	4 cut(s)	26, 325, 387, 487
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	5 cut(s)	6, 89, 113, 252, 282
MboI	GATC	5 cut(s)	4, 87, 111, 250, 280
MboII	GAAGA	4 cut(s)	167, 199, 260, 373
MflI	RGATCY	2 cut(s)	4, 250
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	1 cut(s)	53
MluI	ACGCGT	2 cut(s)	387, 451
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	7 cut(s)	32, 101, 151, 298, 361, 439, 482
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	197, 434
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	3 cut(s)	59, 389, 453
MwoI	GCNNNNNNNGC	4 cut(s)	23, 305, 409, 459
NdeII	GATC	5 cut(s)	4, 87, 111, 250, 280
NlaIII	CATG	2 cut(s)	121, 567
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	4, 250
RsaI	GTAC	2 cut(s)	163, 450
RsaNI	GTAC	2 cut(s)	162, 449
RseI	CAYNNNNRTG	2 cut(s)	197, 434
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	5 cut(s)	4, 87, 111, 250, 280
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	7 cut(s)	87, 172, 178, 301, 450, 534, 548
SfaNI	GCATC	4 cut(s)	26, 325, 387, 487
SmiMI	CAYNNNNRTG	2 cut(s)	197, 434
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	59, 326, 363
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	175
TaqI	TCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.