Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Reverse (-)

26446084 .. 26448058

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAACCAGCAAGTGCTACGGTGGCTAAAGTAGACAGCGGAGGAGAGGACGAGAAATTCGAGGTGGGGAAGGTATACGCTGTCAAGCTGACCACCGGAGATCAGTTCAATGGCATCGTCTTGGCTTATGATTCTGAACCCAACTTCGCCGTTTTCGATATCCTTTTTCGAAATCGCTACTCGCAGCTCGTAGATTCTTATCTCTGCTACTTCGCCTTCTTGATTTCATCTTCTTGTGTTTGTTTTCGCGTATTCCTTGACGGATTAGTGATTTTACAAGAAGGCACGAAGCCTAAACCTCTGGATTCGAAATCCTTACGGATGGTGAATGTGAATTACATAACGGAGATGAAGAATCTGGGGAGGGTTAAGGAACGTCTCGCTAAAAATACTTTGGTTAATCTTGATGGACTCATAGAGAAAGAGAATCATGCTATTAGTAACGTCGAGAAGATTGGTTTTGGTGTTACCGCAGAAGGGCAGATGATCTTTGACGCGATTTCTAAGACGCTTCCTATACGCTGGGTGAACAAAGAAATGCTGGTAATGGGAGATGTGTTTATTCGTAGCCCTTATCATTCTGATTGTGTCTATGGAGGACCCCGTATGGTCAATGAACGAGTAAAGCATGTGCTGGGGCAGGAGAGAAAGAAGTTGCAACTCAGTGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

224

Amino Acids

25.19

Weight (kDa)

8.26

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AD	PF09793	135 - 197	5.2e-16	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	33, 75
AccII	CGCG	2 cut(s)	249, 497
AciI	CCGC	2 cut(s)	39, 471
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	2 cut(s)	88, 187
AluI	AGCT	2 cut(s)	88, 187
Alw26I	GTCTC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	337, 538
AsuII	TTCGAA	2 cut(s)	169, 308
AvaII	GGWCC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	316, 401
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	601
BmsI	GCATC	1 cut(s)	123
Bpu14I	TTCGAA	2 cut(s)	169, 308
BsaBI	GATNNNNATC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	2 cut(s)	522, 634
Bsh1236I	CGCG	2 cut(s)	249, 497
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	2 cut(s)	169, 308
Bsp143I	GATC	2 cut(s)	100, 486
BspACI	CCGC	2 cut(s)	39, 471
BspCNI	CTCAG	1 cut(s)	675
BspFNI	CGCG	2 cut(s)	249, 497
BspLI	GGNNCC	1 cut(s)	601
BspT104I	TTCGAA	2 cut(s)	169, 308
BssMI	GATC	2 cut(s)	100, 486
BssNAI	GTATAC	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	22
BstBI	TTCGAA	2 cut(s)	169, 308
BstDEI	CTNAG	2 cut(s)	504, 662
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	249, 497
BstKTI	GATC	2 cut(s)	103, 489
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	2 cut(s)	100, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	632
BstUI	CGCG	2 cut(s)	249, 497
BstV1I	GCAGC	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	2 cut(s)	503, 517
CviAII	CATG	2 cut(s)	431, 629
CviJI	RGCY	6 cut(s)	26, 88, 125, 187, 292, 570
CviKI_1	RGCY	6 cut(s)	26, 88, 125, 187, 292, 570
DdeI	CTNAG	2 cut(s)	504, 662
DpnI	GATC	2 cut(s)	102, 488
DpnII	GATC	2 cut(s)	100, 486
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	434, 632
FaiI	YATR	9 cut(s)	76, 129, 341, 416, 432, 518, 594, 608, 630
FatI	CATG	2 cut(s)	430, 628
FblI	GTMKAC	2 cut(s)	33, 75
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	2 cut(s)	526, 638
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	2 cut(s)	503, 517
Hin1II	CATG	2 cut(s)	434, 632
HinfI	GANTC	6 cut(s)	131, 194, 305, 355, 411, 427
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	337, 538
Hpy166II	GTNNAC	3 cut(s)	34, 76, 529
Hpy188I	TCNGA	2 cut(s)	136, 583
Hpy188III	TCNNGA	4 cut(s)	220, 302, 404, 448
Hpy8I	GTNNAC	3 cut(s)	34, 76, 529
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	4 cut(s)	64, 226, 275, 470
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	376, 444
HpyCH4V	TGCA	1 cut(s)	658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	504, 662
HpySE526I	ACGT	2 cut(s)	376, 444
Hsp92II	CATG	2 cut(s)	434, 632
Kzo9I	GATC	2 cut(s)	100, 486
LpnPI	CCDG	8 cut(s)	21, 109, 287, 344, 508, 527, 620, 626
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	2 cut(s)	376, 444
MaeIII	GTNAC	3 cut(s)	440, 466, 665
MalI	GATC	2 cut(s)	102, 488
MboI	GATC	2 cut(s)	100, 486
MboII	GAAGA	3 cut(s)	222, 364, 463
MluCI	AATT	2 cut(s)	56, 334
MlyI	GAGTC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	35, 40, 55, 309, 357, 590
MseI	TTAA	2 cut(s)	369, 399
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	96
MvnI	CGCG	2 cut(s)	249, 497
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	100, 486
NlaIII	CATG	2 cut(s)	434, 632
NlaIV	GGNNCC	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	665
NspI	RCATGY	1 cut(s)	632
NspV	TTCGAA	2 cut(s)	169, 308
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 153
PfeI	GAWTC	5 cut(s)	131, 194, 305, 355, 427
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
PspFI	CCCAGC	2 cut(s)	522, 634
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	1 cut(s)	599
PspPPI	RGGWCCY	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	369, 399
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	100, 486
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	405
SetI	ASST	8 cut(s)	66, 75, 90, 189, 301, 379, 447, 674
SfaNI	GCATC	1 cut(s)	123
SfuI	TTCGAA	2 cut(s)	169, 308
SinI	GGWCC	1 cut(s)	599
Sse9I	AATT	2 cut(s)	56, 334
SsiI	CCGC	2 cut(s)	39, 471
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	379, 447
TaqI	TCGA	5 cut(s)	60, 156, 169, 308, 447
TasI	AATT	2 cut(s)	56, 334
TfiI	GAWTC	5 cut(s)	131, 194, 305, 355, 427
Tru1I	TTAA	2 cut(s)	369, 399
Tru9I	TTAA	2 cut(s)	369, 399
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	17, 216, 365, 630
TspGWI	ACGGA	3 cut(s)	276, 334, 359
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	632
XmiI	GTMKAC	2 cut(s)	33, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.