Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Forward (+)

65140314 .. 65140524

Gene Structure 211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCATATCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

50

Amino Acids

5.29

Weight (kDa)

4.23

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM12_LSM	PF21166	12 - 47	2.9e-10	LSM12, LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 115
AcoI	YGGCCR	2 cut(s)	3, 42
AfiI	CCNNNNNNNGG	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	90, 96
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	3, 42, 94
ApeKI	GCWGC	4 cut(s)	15, 23, 26, 29
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	27, 35, 38, 41
BccI	CCATC	2 cut(s)	5, 71
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	92, 98
BcoDI	GTCTC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	16, 24, 27, 30
BlsI	GCNGC	4 cut(s)	17, 25, 28, 31
Bme1390I	CCNGG	2 cut(s)	92, 98
BmgT120I	GGNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	92, 98
BsaJI	CCNNGG	4 cut(s)	6, 45, 75, 91
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	92, 98
BseDI	CCNNGG	4 cut(s)	6, 45, 75, 91
BseGI	GGATG	3 cut(s)	16, 126, 132
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	27, 35, 38, 41
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	5, 44, 96
BsiEI	CGRYCG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	5, 44, 96
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	32, 115
BspANI	GGCC	3 cut(s)	5, 44, 96
BsrDI	GCAATG	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	6, 45, 75, 91
BssT1I	CCWWGG	2 cut(s)	6, 75
Bst2UI	CCWGG	2 cut(s)	92, 98
BstDSI	CCRYGG	2 cut(s)	6, 45
BstF5I	GGATG	3 cut(s)	16, 126, 132
BstMAI	GTCTC	1 cut(s)	64
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	2 cut(s)	92, 98
BstSCI	CCNGG	2 cut(s)	90, 96
BstV1I	GCAGC	4 cut(s)	27, 35, 38, 41
BsuRI	GGCC	3 cut(s)	5, 44, 96
BtgI	CCRYGG	2 cut(s)	6, 45
BtsCI	GGATG	3 cut(s)	16, 126, 132
Cfr13I	GGNCC	1 cut(s)	94
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	3 cut(s)	5, 44, 96
CviKI_1	RGCY	3 cut(s)	5, 44, 96
EaeI	YGGCCR	2 cut(s)	3, 42
Eco130I	CCWWGG	2 cut(s)	6, 75
EcoRII	CCWGG	2 cut(s)	90, 96
EcoT14I	CCWWGG	2 cut(s)	6, 75
ErhI	CCWWGG	2 cut(s)	6, 75
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	10
FaiI	YATR	2 cut(s)	8, 141
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	16, 24, 27, 30
FokI	GGATG	3 cut(s)	23, 113, 119
Fsp4HI	GCNGC	4 cut(s)	16, 24, 27, 30
GluI	GCNGC	4 cut(s)	16, 24, 27, 30
HaeIII	GGCC	3 cut(s)	5, 44, 96
Hin1II	CATG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	118, 146
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	77, 83, 104, 110
Lsp1109I	GCAGC	4 cut(s)	27, 35, 38, 41
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	28, 130, 140
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	92, 98
MvaI	CCWGG	2 cut(s)	92, 98
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	17, 25, 28, 31
Psp6I	CCWGG	2 cut(s)	90, 96
PspGI	CCWGG	2 cut(s)	90, 96
PspPI	GGNCC	1 cut(s)	94
SatI	GCNGC	4 cut(s)	16, 24, 27, 30
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	92, 98
SetI	ASST	3 cut(s)	77, 102, 110
SgeI	CNNG	8 cut(s)	19, 58, 79, 88, 103, 104, 109, 110
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	32, 115
StyD4I	CCNGG	2 cut(s)	90, 96
StyI	CCWWGG	2 cut(s)	6, 75
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	38
TseI	GCWGC	4 cut(s)	15, 23, 26, 29
TspDTI	ATGAA	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.