Rh1CG188600

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001597
Physical Location & Seq
Reverse (-)
41071972 .. 41072502
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG188600.1

Sequence Viewer

Length: 420 bp
ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGGGACGACTTCCAGGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGATACTCAGTGTTTGGTGTGTTTAATTGCAGACAAGCAGAGGCAGAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACGTGAGTGCTTTGCTCTTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

8.24

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 12 - 68 1.3e-13 LSM12, LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 32, 115, 166
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 2 cut(s) 3, 42
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 78, 97, 142
AgsI TTSAA 2 cut(s) 140, 151
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 3 cut(s) 90, 96, 359
AluBI AGCT 2 cut(s) 210, 224
AluI AGCT 2 cut(s) 210, 224
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 1 cut(s) 346
AoxI GGCC 5 cut(s) 3, 42, 94, 158, 186
ApeKI GCWGC 4 cut(s) 15, 23, 26, 29
Asp700I GAANNNNTTC 1 cut(s) 373
AspS9I GGNCC 2 cut(s) 94, 158
AsuHPI GGTGA 2 cut(s) 97, 345
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 27, 35, 38, 41
BccI CCATC 2 cut(s) 5, 71
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 92, 98, 361
BcoDI GTCTC 2 cut(s) 64, 275
BisI GCNGC 4 cut(s) 16, 24, 27, 30
BlsI GCNGC 4 cut(s) 17, 25, 28, 31
Bme1390I CCNGG 3 cut(s) 92, 98, 361
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 94, 158
BmrFI CCNGG 3 cut(s) 92, 98, 361
BmsI GCATC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 6, 45, 75, 91
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 97, 142
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 92, 98, 361
BseDI CCNNGG 4 cut(s) 6, 45, 75, 91
BseGI GGATG 3 cut(s) 16, 126, 132
BseLI CCNNNNNNNGG 3 cut(s) 78, 97, 142
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 286, 302, 379
BseXI GCAGC 4 cut(s) 27, 35, 38, 41
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 5, 44, 96, 160, 188
BsiEI CGRYCG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 78, 97, 142
BsmAI GTCTC 2 cut(s) 64, 275
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 5 cut(s) 5, 44, 96, 160, 188
Bsp143I GATC 2 cut(s) 259, 338
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 32, 115, 166
BspANI GGCC 5 cut(s) 5, 44, 96, 160, 188
BspCNI CTCAG 3 cut(s) 285, 301, 378
BspPI GGATC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 6, 45, 75, 91
BssMI GATC 2 cut(s) 259, 338
BssT1I CCWWGG 2 cut(s) 6, 75
Bst2UI CCWGG 3 cut(s) 92, 98, 361
Bst4CI ACNGT 1 cut(s) 251
BstDEI CTNAG 5 cut(s) 162, 272, 288, 365, 389
BstDSI CCRYGG 2 cut(s) 6, 45
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 16, 126, 132
BstKTI GATC 2 cut(s) 262, 341
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 2 cut(s) 259, 338
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 92, 98, 361
BstSCI CCNGG 3 cut(s) 90, 96, 359
BstV1I GCAGC 4 cut(s) 27, 35, 38, 41
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 5 cut(s) 5, 44, 96, 160, 188
BtgI CCRYGG 2 cut(s) 6, 45
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 3 cut(s) 16, 126, 132
BtsIMutI CAGTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 94, 158
CviAII CATG 1 cut(s) 7
DdeI CTNAG 5 cut(s) 162, 272, 288, 365, 389
DpnI GATC 2 cut(s) 261, 340
DpnII GATC 2 cut(s) 259, 338
EaeI YGGCCR 2 cut(s) 3, 42
Eco130I CCWWGG 2 cut(s) 6, 75
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 90, 96, 359
EcoT14I CCWWGG 2 cut(s) 6, 75
ErhI CCWWGG 2 cut(s) 6, 75
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 195
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 16, 24, 27, 30
FokI GGATG 3 cut(s) 23, 113, 119
Fsp4HI GCNGC 4 cut(s) 16, 24, 27, 30
GluI GCNGC 4 cut(s) 16, 24, 27, 30
HaeIII GGCC 5 cut(s) 5, 44, 96, 160, 188
Hin1II CATG 1 cut(s) 10
HphI GGTGA 2 cut(s) 97, 345
Hpy188I TCNGA 3 cut(s) 275, 343, 368
Hpy188III TCNNGA 2 cut(s) 67, 140
HpyAV CCTTC 2 cut(s) 118, 146
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 23, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 5 cut(s) 162, 272, 288, 365, 389
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 259, 338
LpnPI CCDG 9 cut(s) 77, 83, 104, 110, 160, 292, 346, 369, 373
Lsp1109I GCAGC 4 cut(s) 27, 35, 38, 41
LweI GCATC 1 cut(s) 369
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 251, 351
MalI GATC 2 cut(s) 261, 340
MboI GATC 2 cut(s) 259, 338
MboII GAAGA 2 cut(s) 239, 405
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 38, 306
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 28, 130, 136, 140, 149, 315, 329
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 243, 264, 305, 418
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 92, 98, 361
MvaI CCWGG 3 cut(s) 92, 98, 361
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 259, 338
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 373
PkrI GCNGC 4 cut(s) 17, 25, 28, 31
Psp6I CCWGG 3 cut(s) 90, 96, 359
PspGI CCWGG 3 cut(s) 90, 96, 359
PspPI GGNCC 2 cut(s) 94, 158
SaqAI TTAA 4 cut(s) 243, 264, 305, 418
SatI GCNGC 4 cut(s) 16, 24, 27, 30
Sau3AI GATC 2 cut(s) 259, 338
Sau96I GGNCC 2 cut(s) 94, 158
ScrFI CCNGG 3 cut(s) 92, 98, 361
SetI ASST 7 cut(s) 77, 102, 110, 212, 226, 258, 397
SfaNI GCATC 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 38, 306
SsiI CCGC 3 cut(s) 32, 115, 166
StyD4I CCNGG 3 cut(s) 90, 96, 359
StyI CCWWGG 2 cut(s) 6, 75
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 111, 377
TasI AATT 2 cut(s) 38, 306
Tru1I TTAA 4 cut(s) 243, 264, 305, 418
Tru9I TTAA 4 cut(s) 243, 264, 305, 418
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 4 cut(s) 15, 23, 26, 29
Tsp45I GTSAC 1 cut(s) 351
TspRI CASTG 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.