Rmu_sc0011110.1_g000001

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011110.1
OG0001597
Physical Location & Seq
Forward (+)
504 .. 1877
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011110.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atggatggcagcaatgcagcagcagcggaggaattggccgtgggttgcttcgtctccatcaagaccaccttgggcgacgacttccagggccagggtttgaaaggagggcctaagcggaacatcaggctactcaaggccaactatatcaaggagttgagctatatgggtcaagctgaagacccacttgacattaagaactgttaccttgatcttaatagtctcagagccagagaggaatcagctatcagacaagcagaggcagagtgtgagaggatcggagttggtgtcaccagccaggctcagaacattttcgatgccttgtctaagacgcttccagtacgctgggacaagactgtcatagttgtgatgaatgaggttcgtgtgagcagtccatatcttcccgagtctgtcagtggaggaactcctgctgccaatgatcgggtgaagaaagtgcttgagttggagaagacttttccctcaagggataagtcattgtggctcaagataaattgtttaatcatggtggtaaaattgattaaatgcaagtatggtggtatggtggtcttgctgacaagacgtaagaccaagcatgaagtgttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

200

Amino Acids

22.14

Weight (kDa)

9.05

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AciI CCGC 2 cut(s) 26, 115
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 91, 438
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 3 cut(s) 84, 90, 294
AluBI AGCT 3 cut(s) 159, 173, 242
AluI AGCT 3 cut(s) 159, 173, 242
Alw26I GTCTC 2 cut(s) 58, 224
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 4 cut(s) 36, 88, 107, 135
ApeKI GCWGC 5 cut(s) 9, 17, 20, 23, 428
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 88, 107
AsuHPI GGTGA 2 cut(s) 280, 454
AvaI CYCGRG 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 183, 473
BbvI GCAGC 5 cut(s) 21, 29, 32, 35, 415
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 3 cut(s) 86, 92, 296
BcoDI GTCTC 2 cut(s) 58, 224
BisI GCNGC 5 cut(s) 10, 18, 21, 24, 429
BlsI GCNGC 5 cut(s) 11, 19, 22, 25, 430
Bme1390I CCNGG 3 cut(s) 86, 92, 296
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 88, 107
BmrFI CCNGG 3 cut(s) 86, 92, 296
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 183, 473
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 4 cut(s) 116, 463, 476, 485
BsaJI CCNNGG 4 cut(s) 39, 69, 85, 91
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 438
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 3 cut(s) 86, 92, 296
BseDI CCNNGG 4 cut(s) 39, 69, 85, 91
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 91, 438
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 235, 314
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 5 cut(s) 21, 29, 32, 35, 415
BseYI CCCAGC 1 cut(s) 342
BshFI GGCC 4 cut(s) 38, 90, 109, 137
BsiHKCI CYCGRG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 91, 438
BsmAI GTCTC 2 cut(s) 58, 224
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 4 cut(s) 38, 90, 109, 137
BsoBI CYCGRG 1 cut(s) 401
Bsp143I GATC 3 cut(s) 208, 273, 436
BspACI CCGC 2 cut(s) 26, 115
BspANI GGCC 4 cut(s) 38, 90, 109, 137
BspCNI CTCAG 2 cut(s) 234, 313
BspPI GGATC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 4 cut(s) 39, 69, 85, 91
BssMI GATC 3 cut(s) 208, 273, 436
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 86, 92, 296
Bst4CI ACNGT 2 cut(s) 200, 355
BstDEI CTNAG 4 cut(s) 111, 221, 300, 324
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 211, 276, 439
BstMAI GTCTC 2 cut(s) 58, 224
BstMBI GATC 3 cut(s) 208, 273, 436
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 3 cut(s) 86, 92, 296
BstSCI CCNGG 3 cut(s) 84, 90, 294
BstV1I GCAGC 5 cut(s) 21, 29, 32, 35, 415
BstV2I GAAGAC 2 cut(s) 183, 473
BstXI CCANNNNNNTGG 1 cut(s) 342
BsuRI GGCC 4 cut(s) 38, 90, 109, 137
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 88, 107
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 338
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 2 cut(s) 520, 590
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 4 cut(s) 111, 221, 300, 324
DpnI GATC 3 cut(s) 210, 275, 438
DpnII GATC 3 cut(s) 208, 273, 436
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 84, 90, 294
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 2 cut(s) 523, 593
FaiI YATR 9 cut(s) 144, 162, 164, 359, 394, 521, 549, 557, 591
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 168, 200
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 519, 589
Fnu4HI GCNGC 5 cut(s) 10, 18, 21, 24, 429
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 10, 18, 21, 24, 429
GluI GCNGC 5 cut(s) 10, 18, 21, 24, 429
GsaI CCCAGC 1 cut(s) 346
HaeIII GGCC 4 cut(s) 38, 90, 109, 137
HgaI GACGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 523, 593
HinfI GANTC 2 cut(s) 236, 404
HphI GGTGA 2 cut(s) 280, 454
Hpy188I TCNGA 4 cut(s) 224, 248, 278, 303
Hpy188III TCNNGA 3 cut(s) 61, 401, 502
Hpy99I CGWCG 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 200, 355
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 2 cut(s) 17, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 4 cut(s) 111, 221, 300, 324
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 2 cut(s) 523, 593
Kzo9I GATC 3 cut(s) 208, 273, 436
Lsp1109I GCAGC 5 cut(s) 21, 29, 32, 35, 415
LweI GCATC 1 cut(s) 304
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 2 cut(s) 200, 286
MalI GATC 3 cut(s) 210, 275, 438
MboI GATC 3 cut(s) 208, 273, 436
MboII GAAGA 4 cut(s) 188, 389, 457, 478
MluCI AATT 3 cut(s) 32, 508, 530
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 8 cut(s) 22, 98, 226, 250, 264, 367, 410, 487
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 4 cut(s) 192, 213, 515, 537
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 86, 92, 296
MvaI CCWGG 3 cut(s) 86, 92, 296
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 3 cut(s) 208, 273, 436
NlaIII CATG 2 cut(s) 523, 593
NmuCI GTSAC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 11, 19, 22, 25, 430
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 3 cut(s) 84, 90, 294
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 3 cut(s) 84, 90, 294
PspPI GGNCC 2 cut(s) 88, 107
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 4 cut(s) 192, 213, 515, 537
SatI GCNGC 5 cut(s) 10, 18, 21, 24, 429
Sau3AI GATC 3 cut(s) 208, 273, 436
Sau96I GGNCC 2 cut(s) 88, 107
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 3 cut(s) 86, 92, 296
SetI ASST 7 cut(s) 71, 161, 175, 207, 244, 378, 580
SfaNI GCATC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 4 cut(s) 131, 455, 478, 500
SmoI CTYRAG 4 cut(s) 131, 455, 478, 500
Sse9I AATT 3 cut(s) 32, 508, 530
SsiI CCGC 2 cut(s) 26, 115
StyD4I CCNGG 3 cut(s) 84, 90, 294
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 200, 355
TaiI ACGT 1 cut(s) 580
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 32, 508, 530
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 4 cut(s) 192, 213, 515, 537
Tru9I TTAA 4 cut(s) 192, 213, 515, 537
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 5 cut(s) 9, 17, 20, 23, 428
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.