Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Forward (+)

61341828 .. 61342826

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCATGGATGGCAGCAATGCAGCAGTAGTGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGACGACGACTTCCAGGGACAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGGGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTTGATGCCCTGTCTAAGACGCTTCCAGTAAGCTGGGACAAGACTGTCATAGTTGTGATGAATGAGGTTCGTGTGAGCAGTCCATATCTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

136

Amino Acids

14.92

Weight (kDa)

5.08

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM12_LSM	PF21166	12 - 68	7e-13	LSM12, LSM domain
AD	PF09793	88 - 134	1.6e-16	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AciI	CCGC	2 cut(s)	115, 166
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	2 cut(s)	3, 42
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	97, 142
AgsI	TTSAA	2 cut(s)	140, 151
AjnI	CCWGG	2 cut(s)	90, 300
AluBI	AGCT	3 cut(s)	210, 224, 348
AluI	AGCT	3 cut(s)	210, 224, 348
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	4 cut(s)	3, 42, 158, 186
ApeKI	GCWGC	2 cut(s)	15, 23
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	97, 286
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	27, 35
BccI	CCATC	2 cut(s)	5, 71
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	92, 302
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	16, 24
BlsI	GCNGC	2 cut(s)	17, 25
Bme1390I	CCNGG	2 cut(s)	92, 302
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	92, 302
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	6, 45, 75, 91
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 142
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	92, 302
BseDI	CCNNGG	4 cut(s)	6, 45, 75, 91
BseGI	GGATG	3 cut(s)	16, 126, 132
BseLI	CCNNNNNNNGG	2 cut(s)	97, 142
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	27, 35
BseYI	CCCAGC	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	4 cut(s)	5, 44, 160, 188
BsiEI	CGRYCG	1 cut(s)	115
BslFI	GGGAC	2 cut(s)	108, 365
BslI	CCNNNNNNNGG	2 cut(s)	97, 142
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	108, 365
BsnI	GGCC	4 cut(s)	5, 44, 160, 188
Bsp143I	GATC	2 cut(s)	259, 279
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	115, 166
BspANI	GGCC	4 cut(s)	5, 44, 160, 188
BspCNI	CTCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	4 cut(s)	6, 45, 75, 91
BssMI	GATC	2 cut(s)	259, 279
BssT1I	CCWWGG	2 cut(s)	6, 75
Bst2UI	CCWGG	2 cut(s)	92, 302
Bst4CI	ACNGT	2 cut(s)	251, 361
BstDEI	CTNAG	3 cut(s)	162, 306, 330
BstDSI	CCRYGG	2 cut(s)	6, 45
BstF5I	GGATG	3 cut(s)	16, 126, 132
BstKTI	GATC	2 cut(s)	262, 282
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	259, 279
BstMCI	CGRYCG	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	92, 302
BstSCI	CCNGG	2 cut(s)	90, 300
BstV1I	GCAGC	2 cut(s)	27, 35
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	5, 44, 160, 188
BtgI	CCRYGG	2 cut(s)	6, 45
BtsCI	GGATG	3 cut(s)	16, 126, 132
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	343
CviAII	CATG	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	162, 306, 330
DpnI	GATC	2 cut(s)	261, 281
DpnII	GATC	2 cut(s)	259, 279
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	2 cut(s)	3, 42
Eco130I	CCWWGG	2 cut(s)	6, 75
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	90, 300
EcoT14I	CCWWGG	2 cut(s)	6, 75
ErhI	CCWWGG	2 cut(s)	6, 75
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	10
FaiI	YATR	4 cut(s)	8, 195, 365, 400
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 219, 251
FaqI	GGGAC	2 cut(s)	108, 365
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	16, 24
FokI	GGATG	3 cut(s)	23, 113, 119
Fsp4HI	GCNGC	2 cut(s)	16, 24
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	2 cut(s)	16, 24
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	4 cut(s)	5, 44, 160, 188
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	97, 286
Hpy188I	TCNGA	2 cut(s)	284, 309
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	118, 146
HpyCH4III	ACNGT	2 cut(s)	251, 361
HpyCH4V	TGCA	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	162, 306, 330
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	259, 279
Lsp1109I	GCAGC	2 cut(s)	27, 35
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	251, 292
MalI	GATC	2 cut(s)	261, 281
MboI	GATC	2 cut(s)	259, 279
MboII	GAAGA	2 cut(s)	239, 395
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	28, 130, 140, 149, 270, 373
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	243, 264
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	92, 302
MvaI	CCWGG	2 cut(s)	92, 302
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	259, 279
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	17, 25
Psp6I	CCWGG	2 cut(s)	90, 300
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	90, 300
PspPI	GGNCC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	243, 264
SatI	GCNGC	2 cut(s)	16, 24
Sau3AI	GATC	2 cut(s)	259, 279
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	92, 302
SetI	ASST	8 cut(s)	77, 102, 110, 212, 226, 258, 350, 384
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	115, 166
SspMI	CTAG	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	90, 300
StyI	CCWWGG	2 cut(s)	6, 75
TaaI	ACNGT	2 cut(s)	251, 361
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	243, 264
Tru9I	TTAA	2 cut(s)	243, 264
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	15, 23
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	389
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.