Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Reverse (-)

5023821 .. 5024232

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCATGGATGGCGGCTTCACAGAGGAGTTGGCCATCGGGTGCTTGGTCTCCATCAAGACCACGCTAAGCGACGAGTTCCAAGGCCAAGTCATCACCTTCGATCGCCCCTCCAACATCGTCGTCATTCATATCCTTTCACCGTTCGGTTCGAAAGGCGGAGCGCGGCGGAACATACGGCTGCTGAAGGCCAACTATATAAAGGAGCTGTTGTACTTGGGCCAGGCGGAAGACCCACTTGATATCAAAAAGTGTTACCTTGATCTCAATAGTCTGCGAGCCAGGGAGGAACTGGCGATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

6.56

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AciI	CCGC	5 cut(s)	15, 159, 166, 169, 227
AcoI	YGGCCR	2 cut(s)	3, 33
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	222, 281
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	5 cut(s)	3, 33, 85, 189, 220
ApeKI	GCWGC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	88, 132
AsuII	TTCGAA	1 cut(s)	152
BalI	TGGCCA	2 cut(s)	5, 35
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	3 cut(s)	5, 44, 62
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	224, 283
BcoDI	GTCTC	1 cut(s)	55
BisI	GCNGC	3 cut(s)	16, 167, 182
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	3 cut(s)	17, 168, 183
Bme1390I	CCNGG	2 cut(s)	224, 283
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	224, 283
BpiI	GAAGAC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	6, 82, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	224, 283
BseDI	CCNNGG	3 cut(s)	6, 82, 282
BseGI	GGATG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	5, 35, 87, 191, 222
BsiEI	CGRYCG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	5 cut(s)	5, 35, 87, 191, 222
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	103, 262
Bsp1720I	GCTNAGC	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	15, 159, 166, 169, 227
BspANI	GGCC	5 cut(s)	5, 35, 87, 191, 222
BspFNI	CGCG	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	6, 82, 282
BssMI	GATC	2 cut(s)	103, 262
BssT1I	CCWWGG	2 cut(s)	6, 82
Bst2UI	CCWGG	2 cut(s)	224, 283
Bst4CI	ACNGT	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	106, 265
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	103, 262
BstMCI	CGRYCG	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	224, 283
BstSCI	CCNGG	2 cut(s)	222, 281
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	5 cut(s)	5, 35, 87, 191, 222
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	5, 18, 35, 87, 181, 191, 208, 222, 281
CviKI_1	RGCY	9 cut(s)	5, 18, 35, 87, 181, 191, 208, 222, 281
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	105, 264
DpnII	GATC	2 cut(s)	103, 262
EaeI	YGGCCR	2 cut(s)	3, 33
EciI	GGCGGA	3 cut(s)	174, 184, 242
Eco130I	CCWWGG	2 cut(s)	6, 82
Eco31I	GGTCTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	222, 281
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	6, 82
ErhI	CCWWGG	2 cut(s)	6, 82
FaeI	CATG	1 cut(s)	10
FaiI	YATR	5 cut(s)	8, 132, 176, 198, 200
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	16, 167, 182
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	16, 167, 182
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	16, 167, 182
HaeIII	GGCC	5 cut(s)	5, 35, 87, 191, 222
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HphI	GGTGA	2 cut(s)	88, 132
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	2 cut(s)	77, 125
HpyAV	CCTTC	2 cut(s)	109, 181
HpyCH4III	ACNGT	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	103, 262
LmnI	GCTCC	2 cut(s)	161, 205
LpnPI	CCDG	5 cut(s)	209, 236, 268, 278, 295
Lsp1109I	GCAGC	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	105, 264
MboI	GATC	2 cut(s)	103, 262
MboII	GAAGA	1 cut(s)	242
MlsI	TGGCCA	2 cut(s)	5, 35
MluNI	TGGCCA	2 cut(s)	5, 35
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	19, 121, 280
Mox20I	TGGCCA	2 cut(s)	5, 35
MscI	TGGCCA	2 cut(s)	5, 35
Msp20I	TGGCCA	2 cut(s)	5, 35
MspR9I	CCNGG	2 cut(s)	224, 283
MvaI	CCWGG	2 cut(s)	224, 283
MvnI	CGCG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	103, 262
NlaIII	CATG	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	17, 168, 183
Ple19I	CGATCG	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	222, 281
PspGI	CCWGG	2 cut(s)	222, 281
PspPI	GGNCC	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	3 cut(s)	16, 167, 182
Sau3AI	GATC	2 cut(s)	103, 262
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	224, 283
SetI	ASST	4 cut(s)	101, 210, 261, 305
SfuI	TTCGAA	1 cut(s)	152
SsiI	CCGC	5 cut(s)	15, 159, 166, 169, 227
StyD4I	CCNGG	2 cut(s)	222, 281
StyI	CCWWGG	2 cut(s)	6, 82
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	102, 152
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	18, 169
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.