Rh4AG231500

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001597
Physical Location & Seq
Forward (+)
53509871 .. 53510838
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG231500.1

Sequence Viewer

Length: 492 bp
ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGTCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAAGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGAAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGATACTCAGTTGAATAATGTAGTGTTTGGTGTGTTTAATTGCAGACAAGCAGAGGCAGTGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACAAGTTATGTTGTCTGGACTGATTGTCATGGTGGTGATCAGGCTTCCAGTAAGCTGGGACAAGACTGTCATAGTTGTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

4.89

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 13 - 68 4e-13 LSM12, LSM domain
AD PF09793 107 - 143 4.8e-06 Anticodon-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 471
AciI CCGC 2 cut(s) 32, 115
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 97, 142
AgsI TTSAA 3 cut(s) 140, 151, 295
AhdI GACNNNNNGTC 1 cut(s) 429
AjnI CCWGG 2 cut(s) 96, 372
AluBI AGCT 3 cut(s) 210, 224, 460
AluI AGCT 3 cut(s) 210, 224, 460
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 1 cut(s) 359
AoxI GGCC 4 cut(s) 3, 94, 158, 186
ApeKI GCWGC 4 cut(s) 15, 23, 26, 29
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 97, 358, 452
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 27, 35, 38, 41
BccI CCATC 2 cut(s) 5, 71
BciT130I CCWGG 2 cut(s) 98, 374
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 64, 275
BisI GCNGC 4 cut(s) 16, 24, 27, 30
BlsI GCNGC 4 cut(s) 17, 25, 28, 31
Bme1390I CCNGG 2 cut(s) 98, 374
BmeRI GACNNNNNGTC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 98, 374
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 6, 75, 91
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 142
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 98, 374
BseDI CCNNGG 3 cut(s) 6, 75, 91
BseGI GGATG 3 cut(s) 16, 126, 132
BseLI CCNNNNNNNGG 2 cut(s) 97, 142
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 286, 302, 392
BseNI ACTGG 1 cut(s) 453
BseXI GCAGC 4 cut(s) 27, 35, 38, 41
BseYI CCCAGC 1 cut(s) 460
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 4 cut(s) 5, 96, 160, 188
BsiEI CGRYCG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 2 cut(s) 97, 142
BsmAI GTCTC 2 cut(s) 64, 275
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 4 cut(s) 5, 96, 160, 188
Bsp143I GATC 3 cut(s) 259, 351, 442
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 32, 115
BspANI GGCC 4 cut(s) 5, 96, 160, 188
BspCNI CTCAG 3 cut(s) 285, 301, 391
BspPI GGATC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 3 cut(s) 6, 75, 91
BssMI GATC 3 cut(s) 259, 351, 442
BssT1I CCWWGG 3 cut(s) 6, 75, 91
Bst2UI CCWGG 2 cut(s) 98, 374
Bst4CI ACNGT 2 cut(s) 251, 473
BstDEI CTNAG 5 cut(s) 162, 272, 288, 378, 402
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 16, 126, 132
BstKTI GATC 3 cut(s) 262, 354, 445
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 3 cut(s) 259, 351, 442
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 98, 374
BstSCI CCNGG 2 cut(s) 96, 372
BstV1I GCAGC 4 cut(s) 27, 35, 38, 41
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuRI GGCC 4 cut(s) 5, 96, 160, 188
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 16, 126, 132
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 2 cut(s) 7, 434
DdeI CTNAG 5 cut(s) 162, 272, 288, 378, 402
DpnI GATC 3 cut(s) 261, 353, 444
DpnII GATC 3 cut(s) 259, 351, 442
DrdI GACNNNNNNGTC 1 cut(s) 471
DriI GACNNNNNGTC 1 cut(s) 429
DseDI GACNNNNNNGTC 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 6, 75, 91
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 96, 372
EcoT14I CCWWGG 3 cut(s) 6, 75, 91
ErhI CCWWGG 3 cut(s) 6, 75, 91
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 10, 437
FaiI YATR 5 cut(s) 8, 195, 414, 435, 477
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FaqI GGGAC 1 cut(s) 477
FatI CATG 2 cut(s) 6, 433
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 16, 24, 27, 30
FokI GGATG 3 cut(s) 23, 113, 119
Fsp4HI GCNGC 4 cut(s) 16, 24, 27, 30
GluI GCNGC 4 cut(s) 16, 24, 27, 30
GsaI CCCAGC 1 cut(s) 464
HaeIII GGCC 4 cut(s) 5, 96, 160, 188
Hin1II CATG 2 cut(s) 10, 437
HphI GGTGA 3 cut(s) 97, 358, 452
Hpy188I TCNGA 3 cut(s) 275, 356, 381
Hpy188III TCNNGA 3 cut(s) 67, 140, 421
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 118, 146
HpyCH4III ACNGT 2 cut(s) 251, 473
HpyCH4V TGCA 2 cut(s) 23, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 5 cut(s) 162, 272, 288, 378, 402
Hsp92II CATG 2 cut(s) 10, 437
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 259, 351, 442
Lsp1109I GCAGC 4 cut(s) 27, 35, 38, 41
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 251, 364
MalI GATC 3 cut(s) 261, 353, 444
MboI GATC 3 cut(s) 259, 351, 442
MboII GAAGA 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 38, 319
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 28, 130, 136, 140, 149, 328, 342
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 243, 264, 318
MslI CAYNNNNRTG 2 cut(s) 438, 480
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 98, 374
MvaI CCWGG 2 cut(s) 98, 374
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 259, 351, 442
NlaIII CATG 2 cut(s) 10, 437
NmuCI GTSAC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 386
PkrI GCNGC 4 cut(s) 17, 25, 28, 31
Psp6I CCWGG 2 cut(s) 96, 372
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 2 cut(s) 96, 372
PspPI GGNCC 1 cut(s) 158
RseI CAYNNNNRTG 2 cut(s) 438, 480
SaqAI TTAA 3 cut(s) 243, 264, 318
SatI GCNGC 4 cut(s) 16, 24, 27, 30
Sau3AI GATC 3 cut(s) 259, 351, 442
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 98, 374
SetI ASST 7 cut(s) 77, 102, 110, 212, 226, 258, 462
SfaNI GCATC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 438, 480
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 38, 319
SsiI CCGC 2 cut(s) 32, 115
StyD4I CCNGG 2 cut(s) 96, 372
StyI CCWWGG 3 cut(s) 6, 75, 91
TaaI ACNGT 2 cut(s) 251, 473
TaqI TCGA 2 cut(s) 111, 390
TasI AATT 2 cut(s) 38, 319
Tru1I TTAA 3 cut(s) 243, 264, 318
Tru9I TTAA 3 cut(s) 243, 264, 318
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 15, 23, 26, 29
Tsp45I GTSAC 1 cut(s) 364
TspRI CASTG 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.