Rh6BG138800

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001597
Physical Location & Seq
Forward (+)
22144270 .. 22146218
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG138800.1

Sequence Viewer

Length: 312 bp
ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGTCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAAGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGAAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGATACTCAGTTCAAAGTGATCCATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

6.56

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 13 - 68 1.3e-13 LSM12, LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 115
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 97, 142
AgsI TTSAA 3 cut(s) 140, 151, 295
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 210, 224
AluI AGCT 2 cut(s) 210, 224
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 1 cut(s) 295
AoxI GGCC 4 cut(s) 3, 94, 158, 186
ApeKI GCWGC 4 cut(s) 15, 23, 26, 29
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 97
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 27, 35, 38, 41
BccI CCATC 2 cut(s) 5, 71
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 64, 275
BisI GCNGC 4 cut(s) 16, 24, 27, 30
BlsI GCNGC 4 cut(s) 17, 25, 28, 31
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 6, 75, 91
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 142
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 6, 75, 91
BseGI GGATG 3 cut(s) 16, 126, 132
BseLI CCNNNNNNNGG 2 cut(s) 97, 142
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 286, 302
BseXI GCAGC 4 cut(s) 27, 35, 38, 41
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 4 cut(s) 5, 96, 160, 188
BsiEI CGRYCG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 97, 142
BsmAI GTCTC 2 cut(s) 64, 275
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 4 cut(s) 5, 96, 160, 188
Bsp143I GATC 2 cut(s) 259, 300
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 32, 115
BspANI GGCC 4 cut(s) 5, 96, 160, 188
BspCNI CTCAG 2 cut(s) 285, 301
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 6, 75, 91
BssMI GATC 2 cut(s) 259, 300
BssT1I CCWWGG 3 cut(s) 6, 75, 91
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 162, 272, 288
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 16, 126, 132
BstKTI GATC 2 cut(s) 262, 303
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 2 cut(s) 259, 300
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 27, 35, 38, 41
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 4 cut(s) 5, 96, 160, 188
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 16, 126, 132
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 5, 96, 160, 178, 188, 210, 224, 278
CviKI_1 RGCY 8 cut(s) 5, 96, 160, 178, 188, 210, 224, 278
DdeI CTNAG 3 cut(s) 162, 272, 288
DpnI GATC 2 cut(s) 261, 302
DpnII GATC 2 cut(s) 259, 300
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 6, 75, 91
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 3 cut(s) 6, 75, 91
ErhI CCWWGG 3 cut(s) 6, 75, 91
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 195, 306
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 16, 24, 27, 30
FokI GGATG 3 cut(s) 23, 113, 119
Fsp4HI GCNGC 4 cut(s) 16, 24, 27, 30
GluI GCNGC 4 cut(s) 16, 24, 27, 30
HaeIII GGCC 4 cut(s) 5, 96, 160, 188
Hin1II CATG 1 cut(s) 10
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 67, 140
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 118, 146
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 162, 272, 288
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 259, 300
LpnPI CCDG 4 cut(s) 83, 110, 160, 292
Lsp1109I GCAGC 4 cut(s) 27, 35, 38, 41
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 261, 302
MboI GATC 2 cut(s) 259, 300
MboII GAAGA 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 5 cut(s) 28, 130, 136, 140, 149
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 243, 264
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 259, 300
NlaIII CATG 1 cut(s) 10
PkrI GCNGC 4 cut(s) 17, 25, 28, 31
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 243, 264
SatI GCNGC 4 cut(s) 16, 24, 27, 30
Sau3AI GATC 2 cut(s) 259, 300
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 98
SetI ASST 6 cut(s) 77, 102, 110, 212, 226, 258
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 38
SsiI CCGC 2 cut(s) 32, 115
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 3 cut(s) 6, 75, 91
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 38
Tru1I TTAA 2 cut(s) 243, 264
Tru9I TTAA 2 cut(s) 243, 264
TseI GCWGC 4 cut(s) 15, 23, 26, 29
XagI CCTNNNNNAGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.