Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Reverse (-)

69508556 .. 69508871

Gene Structure 316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG494600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGCCTTGGATGGCAGCAATGCAGCAGCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTTAGAGCCAGAGAGGAATCAGCTATCAGACAAGCAGAGGCAGAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

73

Amino Acids

8.33

Weight (kDa)

4.93

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AD	PF09793	32 - 73	3.3e-10	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	84
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	62, 131
AluI	AGCT	2 cut(s)	62, 131
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	7 cut(s)	5, 13, 16, 19, 44, 52, 55
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	7 cut(s)	17, 25, 28, 31, 56, 64, 67
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	185
BisI	GCNGC	7 cut(s)	6, 14, 17, 20, 45, 53, 56
BlsI	GCNGC	7 cut(s)	7, 15, 18, 21, 46, 54, 57
Bme1390I	CCNGG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse3DI	GCAATG	2 cut(s)	15, 54
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	45
BseMI	GCAATG	2 cut(s)	15, 54
BseMII	CTCAG	1 cut(s)	203
BseXI	GCAGC	7 cut(s)	17, 25, 28, 31, 56, 64, 67
BshFI	GGCC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	97, 162
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	15, 54
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	97, 162
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	110, 189, 213
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	100, 165
BstMBI	GATC	2 cut(s)	97, 162
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	7 cut(s)	17, 25, 28, 31, 56, 64, 67
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	60
CviJI	RGCY	6 cut(s)	34, 62, 116, 131, 183, 188
CviKI_1	RGCY	6 cut(s)	34, 62, 116, 131, 183, 188
DdeI	CTNAG	3 cut(s)	110, 189, 213
DpnI	GATC	2 cut(s)	99, 164
DpnII	GATC	2 cut(s)	97, 162
Eco130I	CCWWGG	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
Fnu4HI	GCNGC	7 cut(s)	6, 14, 17, 20, 45, 53, 56
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	7 cut(s)	6, 14, 17, 20, 45, 53, 56
GluI	GCNGC	7 cut(s)	6, 14, 17, 20, 45, 53, 56
HaeIII	GGCC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	137, 167, 192
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	13, 52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	3 cut(s)	110, 189, 213
HpySE526I	ACGT	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	97, 162
LpnPI	CCDG	4 cut(s)	130, 170, 193, 197
Lsp1109I	GCAGC	7 cut(s)	17, 25, 28, 31, 56, 64, 67
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	89, 175
MalI	GATC	2 cut(s)	99, 164
MboI	GATC	2 cut(s)	97, 162
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	4 cut(s)	18, 115, 139, 153
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	81, 102
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	97, 162
NmuCI	GTSAC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	7 cut(s)	7, 15, 18, 21, 46, 54, 57
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	81, 102
SatI	GCNGC	7 cut(s)	6, 14, 17, 20, 45, 53, 56
Sau3AI	GATC	2 cut(s)	97, 162
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	4 cut(s)	64, 96, 133, 221
SfaNI	GCATC	1 cut(s)	193
SgeI	CNNG	9 cut(s)	48, 71, 86, 107, 129, 152, 192, 196, 197
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	81, 102
Tru9I	TTAA	2 cut(s)	81, 102
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	7 cut(s)	5, 13, 16, 19, 44, 52, 55
Tsp45I	GTSAC	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.