Rh6CG072700

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001597
Physical Location & Seq
Reverse (-)
7412847 .. 7418426
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG072700.1

Sequence Viewer

Length: 528 bp
ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGTCGTGGGTTGCTTTGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGATACTCAGGCAGTGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACATTCATCGAGGAGATCCAGACCTTAACCCAATCTCCTCATAGTCATCCATTTTCTGGCCGACGCGATGTTCCTCGACAACTCACCGATTTCGAAGAGCCCAAAGTTGAGGCGGAGCAAGAGGAGCACACTAATATCCAGACCCGAGCCAAGGCTGTAGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

5.05

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 13 - 68 4.6e-13 LSM12, LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 426
AciI CCGC 4 cut(s) 32, 115, 166, 473
AclWI GGATC 2 cut(s) 314, 370
AcoI YGGCCR 2 cut(s) 3, 418
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 4 cut(s) 97, 142, 416, 511
AgsI TTSAA 2 cut(s) 140, 151
AjnI CCWGG 3 cut(s) 90, 96, 327
AluBI AGCT 2 cut(s) 210, 224
AluI AGCT 2 cut(s) 210, 224
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 2 cut(s) 314, 370
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 5 cut(s) 3, 94, 158, 186, 418
ApeKI GCWGC 4 cut(s) 15, 23, 26, 29
Asp700I GAANNNNTTC 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 94, 158
AsuHPI GGTGA 3 cut(s) 97, 313, 436
AsuII TTCGAA 1 cut(s) 453
AvaI CYCGRG 1 cut(s) 504
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 4 cut(s) 27, 35, 38, 41
BccI CCATC 2 cut(s) 5, 71
BciT130I CCWGG 3 cut(s) 92, 98, 329
BcoDI GTCTC 2 cut(s) 64, 275
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 4 cut(s) 16, 24, 27, 30
BlsI GCNGC 4 cut(s) 17, 25, 28, 31
Bme1390I CCNGG 3 cut(s) 92, 98, 329
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 94, 158
BmrFI CCNGG 3 cut(s) 92, 98, 329
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 6, 75, 91, 510
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 303, 333, 379, 409
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 142, 416, 511
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 92, 98, 329
BseDI CCNNGG 4 cut(s) 6, 75, 91, 510
BseGI GGATG 4 cut(s) 16, 126, 132, 406
BseLI CCNNNNNNNGG 4 cut(s) 97, 142, 416, 511
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 286, 302, 347
BseRI GAGGAG 3 cut(s) 386, 387, 497
BseXI GCAGC 4 cut(s) 27, 35, 38, 41
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 5, 96, 160, 188, 420
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 504
BslI CCNNNNNNNGG 4 cut(s) 97, 142, 416, 511
BsmAI GTCTC 2 cut(s) 64, 275
BsnI GGCC 5 cut(s) 5, 96, 160, 188, 420
BsoBI CYCGRG 1 cut(s) 504
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 2 cut(s) 462, 489
Bsp143I GATC 3 cut(s) 259, 306, 375
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 32, 115, 166, 473
BspANI GGCC 5 cut(s) 5, 96, 160, 188, 420
BspCNI CTCAG 3 cut(s) 285, 301, 346
BspFNI CGCG 1 cut(s) 426
BspPI GGATC 2 cut(s) 314, 370
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 6, 75, 91, 510
BssMI GATC 3 cut(s) 259, 306, 375
BssT1I CCWWGG 3 cut(s) 6, 75, 510
Bst2UI CCWGG 3 cut(s) 92, 98, 329
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 453
BstDEI CTNAG 5 cut(s) 162, 272, 288, 333, 357
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 16, 126, 132, 406
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 3 cut(s) 262, 309, 378
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 3 cut(s) 259, 306, 375
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 29, 484
BstNI CCWGG 3 cut(s) 92, 98, 329
BstSCI CCNGG 3 cut(s) 90, 96, 327
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 4 cut(s) 27, 35, 38, 41
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 5 cut(s) 5, 96, 160, 188, 420
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 4 cut(s) 16, 126, 132, 406
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 94, 158
CseI GACGC 1 cut(s) 432
CviAII CATG 1 cut(s) 7
DdeI CTNAG 5 cut(s) 162, 272, 288, 333, 357
DpnI GATC 3 cut(s) 261, 308, 377
DpnII GATC 3 cut(s) 259, 306, 375
EaeI YGGCCR 2 cut(s) 3, 418
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 488
Eco130I CCWWGG 3 cut(s) 6, 75, 510
Eco24I GRGCYC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 504
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 90, 96, 327
EcoT14I CCWWGG 3 cut(s) 6, 75, 510
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 3 cut(s) 6, 75, 510
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 195, 402
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 16, 24, 27, 30
FokI GGATG 4 cut(s) 23, 113, 119, 393
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 4 cut(s) 16, 24, 27, 30
GluI GCNGC 4 cut(s) 16, 24, 27, 30
HaeIII GGCC 5 cut(s) 5, 96, 160, 188, 420
HgaI GACGC 1 cut(s) 432
Hin1II CATG 1 cut(s) 10
HphI GGTGA 3 cut(s) 97, 313, 436
Hpy188I TCNGA 3 cut(s) 275, 311, 336
Hpy188III TCNNGA 4 cut(s) 67, 140, 379, 499
Hpy99I CGWCG 2 cut(s) 86, 426
HpyAV CCTTC 2 cut(s) 118, 146
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 484
HpyF3I CTNAG 5 cut(s) 162, 272, 288, 333, 357
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 3 cut(s) 259, 306, 375
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 475, 484
Lsp1109I GCAGC 4 cut(s) 27, 35, 38, 41
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 2 cut(s) 251, 319
MalI GATC 3 cut(s) 261, 308, 377
MboI GATC 3 cut(s) 259, 306, 375
MboII GAAGA 2 cut(s) 239, 467
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 462, 489
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 243, 264, 386
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 92, 98, 329
MvaI CCWGG 3 cut(s) 92, 98, 329
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 29, 484
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 259, 306, 375
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 319
NspV TTCGAA 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 4 cut(s) 17, 25, 28, 31
Psp6I CCWGG 3 cut(s) 90, 96, 327
PspGI CCWGG 3 cut(s) 90, 96, 327
PspPI GGNCC 2 cut(s) 94, 158
PsuI RGATCY 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 243, 264, 386
SatI GCNGC 4 cut(s) 16, 24, 27, 30
Sau3AI GATC 3 cut(s) 259, 306, 375
Sau96I GGNCC 2 cut(s) 94, 158
ScrFI CCNGG 3 cut(s) 92, 98, 329
SduI GDGCHC 2 cut(s) 462, 489
SetI ASST 7 cut(s) 77, 102, 110, 212, 226, 258, 386
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 38
SsiI CCGC 4 cut(s) 32, 115, 166, 473
StyD4I CCNGG 3 cut(s) 90, 96, 327
StyI CCWWGG 3 cut(s) 6, 75, 510
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 111, 345, 369, 436, 453
TasI AATT 1 cut(s) 38
Tru1I TTAA 3 cut(s) 243, 264, 386
Tru9I TTAA 3 cut(s) 243, 264, 386
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 4 cut(s) 15, 23, 26, 29
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 1 cut(s) 300
Van91I CCANNNNNTGG 1 cut(s) 416
XagI CCTNNNNNAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.