Rorug01G0030100

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001597
Physical Location & Seq
Forward (+)
5108957 .. 5109244
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0030100.1

Sequence Viewer

Length: 288 bp
ATGCGGCTCAAGCCACCCTCCCTCTACGGGTGCTTATCGCCAATCTACCGAGGATCTCATCCTCGATCTACTAGACGCTTGATGCCAATCTATAGGGCGCTCGTCGCAATTTTGGTATTTTTGACTTCAAGGTTGGCTGTGAGGAAGACATGGCTTCACCGTCAAGCTTGGCTGTTATTCAATGGAAGTGTTCTATTGTTGATGCCGATGGTGAGGTCGGGCGGTGGATTTGCAGCCGTTCTGCTTCTGTTAGTGGCGGCGGTAATGCCTGGCAGGTGTCGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

12.0

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 264
AciI CCGC 4 cut(s) 4, 222, 257, 260
AclWI GGATC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 129, 181
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AlwI GGATC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 149, 223
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 270
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 3 cut(s) 5, 234, 258
BlsI GCNGC 3 cut(s) 6, 235, 259
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 72, 192
BpiI GAAGAC 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 86
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp143I GATC 2 cut(s) 53, 65
BspACI CCGC 4 cut(s) 4, 222, 257, 260
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 53, 65
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 161
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 56, 68
BstMBI GATC 2 cut(s) 53, 65
BstMWI GCNNNNNNNGC 2 cut(s) 10, 104
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 264
CfoI GCGC 1 cut(s) 100
CseI GACGC 1 cut(s) 84
CviAII CATG 1 cut(s) 150
CviJI RGCY 8 cut(s) 7, 13, 137, 154, 167, 172, 236, 283
CviKI_1 RGCY 8 cut(s) 7, 13, 137, 154, 167, 172, 236, 283
DpnI GATC 2 cut(s) 55, 67
DpnII GATC 2 cut(s) 53, 65
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 153
FaiI YATR 2 cut(s) 93, 151
FatI CATG 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 5, 234, 258
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 5, 234, 258
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 99
GluI GCNGC 3 cut(s) 5, 234, 258
HaeII RGCGCY 1 cut(s) 101
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 153
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 165
HphI GGTGA 2 cut(s) 149, 223
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 104
Hsp92II CATG 1 cut(s) 153
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 2 cut(s) 53, 65
LpnPI CCDG 3 cut(s) 255, 259, 282
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 72, 192
MaeI CTAG 1 cut(s) 72
MalI GATC 2 cut(s) 55, 67
MboI GATC 2 cut(s) 53, 65
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 53
MluCI AATT 1 cut(s) 108
MnlI CCTC 6 cut(s) 28, 32, 44, 72, 135, 207
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 10, 104
NdeII GATC 2 cut(s) 53, 65
NlaIII CATG 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 264
PkrI GCNGC 3 cut(s) 6, 235, 259
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 53
SatI GCNGC 3 cut(s) 5, 234, 258
Sau3AI GATC 2 cut(s) 53, 65
ScrFI CCNGG 1 cut(s) 270
SetI ASST 4 cut(s) 134, 169, 218, 278
SfaNI GCATC 2 cut(s) 72, 192
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 108
SsiI CCGC 4 cut(s) 4, 222, 257, 260
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 108
TauI GCSGC 2 cut(s) 7, 260
TseI GCWGC 1 cut(s) 233
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.