Prupe.1G258600_v2.0.a1

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001597
Physical Location & Seq
Forward (+)
26818479 .. 26818824
346 bp
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UTR
Exon/CDS
Intron
Prupe.1G258600.1

Sequence Viewer

Length: 183 bp
ATGATGATCAGGCTTCCAGTGCGCTGGGACAAGACTGTAATAGTTGTGATGAATGCGGTGCGTGTAAGTAGTCCATATACTCCGGAGTCTGTCAGTGGAGGAACACCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAGCTTGAGAGGAAAAGGTTGCAAACTCGTGGCAGTGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

61

Amino Acids

6.72

Weight (kDa)

10.92

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 2 cut(s) 56, 121
AfiI CCNNNNNNNGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Aor13HI TCCGGA 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 136
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 97
BclI TGATCA 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BpuEI CTTGAG 2 cut(s) 158, 164
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 56, 121
BspEI TCCGGA 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 37
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 3 cut(s) 24, 100, 178
BveI ACCTGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 24
CviJI RGCY 2 cut(s) 13, 142
CviKI_1 RGCY 2 cut(s) 13, 142
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
FaiI YATR 2 cut(s) 76, 78
FaqI GGGAC 1 cut(s) 41
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 28
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HspAI GCGC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 10, 30, 96, 120
Lsp1109I GCAGC 1 cut(s) 97
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 139
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 92, 141
MroI TCCGGA 1 cut(s) 82
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 24
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 95
SetI ASST 3 cut(s) 109, 144, 158
SmlI CTYRAG 2 cut(s) 137, 143
SmoI CTYRAG 2 cut(s) 137, 143
SsiI CCGC 2 cut(s) 56, 121
TaaI ACNGT 1 cut(s) 37
TscAI CASTG 3 cut(s) 24, 100, 178
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 3 cut(s) 24, 100, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.