Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Forward (+)

15487152 .. 15489722

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCAGGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGTTCAAGCTGAAGACCCACTTGACAGTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGAGGAATTAGCTATCAGACAAGCAGAGGCAGAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACCAGTCCATATCTTCTCGAGTCTGTCAGTGGAGGAACTCCTGCTGCCCATGATCGGGTGAAGAAAATGCTTGAATCCACTTCTGGGATCGACGAAGTTGAGAGGGAGAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

5.13

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AD	PF09793	71 - 114	1.5e-09	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 121
AclWI	GGATC	2 cut(s)	287, 428
AcoI	YGGCCR	2 cut(s)	3, 42
AcuI	CTGAAG	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	97, 387, 388, 417
AgsI	TTSAA	3 cut(s)	106, 176, 407
AjnI	CCWGG	4 cut(s)	5, 90, 96, 300
AluBI	AGCT	3 cut(s)	165, 179, 248
AluI	AGCT	3 cut(s)	165, 179, 248
Alw26I	GTCTC	2 cut(s)	64, 230
AlwI	GGATC	2 cut(s)	287, 428
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	5 cut(s)	3, 42, 94, 113, 141
ApeKI	GCWGC	5 cut(s)	15, 23, 26, 29, 377
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	94, 113
AsuHPI	GGTGA	2 cut(s)	286, 403
AvaI	CYCGRG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	27, 35, 38, 41, 364
BccI	CCATC	2 cut(s)	5, 71
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	4 cut(s)	7, 92, 98, 302
BcoDI	GTCTC	2 cut(s)	64, 230
BisI	GCNGC	5 cut(s)	16, 24, 27, 30, 378
BlsI	GCNGC	5 cut(s)	17, 25, 28, 31, 379
Bme1390I	CCNGG	4 cut(s)	7, 92, 98, 302
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	94, 113
BmrFI	CCNGG	4 cut(s)	7, 92, 98, 302
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	6, 45, 75, 91, 97
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 387, 388, 417
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	4 cut(s)	7, 92, 98, 302
BseDI	CCNNGG	5 cut(s)	6, 45, 75, 91, 97
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	4 cut(s)	97, 387, 388, 417
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	241, 320
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	5 cut(s)	27, 35, 38, 41, 364
BshFI	GGCC	5 cut(s)	5, 44, 96, 115, 143
BsiHKCI	CYCGRG	1 cut(s)	350
BslI	CCNNNNNNNGG	4 cut(s)	97, 387, 388, 417
BsmAI	GTCTC	2 cut(s)	64, 230
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	5, 44, 96, 115, 143
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	214, 279, 385, 420
BspACI	CCGC	2 cut(s)	32, 121
BspANI	GGCC	5 cut(s)	5, 44, 96, 115, 143
BspCNI	CTCAG	2 cut(s)	240, 319
BspPI	GGATC	2 cut(s)	287, 428
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	5 cut(s)	6, 45, 75, 91, 97
BssMI	GATC	4 cut(s)	214, 279, 385, 420
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	4 cut(s)	7, 92, 98, 302
Bst4CI	ACNGT	2 cut(s)	197, 206
BstDEI	CTNAG	4 cut(s)	117, 227, 306, 330
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	4 cut(s)	217, 282, 388, 423
BstMAI	GTCTC	2 cut(s)	64, 230
BstMBI	GATC	4 cut(s)	214, 279, 385, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	4 cut(s)	7, 92, 98, 302
BstSCI	CCNGG	4 cut(s)	5, 90, 96, 300
BstV1I	GCAGC	5 cut(s)	27, 35, 38, 41, 364
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	5 cut(s)	5, 44, 96, 115, 143
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	94, 113
CviAII	CATG	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	117, 227, 306, 330
DpnI	GATC	4 cut(s)	216, 281, 387, 422
DpnII	GATC	4 cut(s)	214, 279, 385, 420
EaeI	YGGCCR	2 cut(s)	3, 42
Eco130I	CCWWGG	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	4 cut(s)	5, 90, 96, 300
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	386
FaiI	YATR	3 cut(s)	150, 343, 384
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 174, 206
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	5 cut(s)	16, 24, 27, 30, 378
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	5 cut(s)	16, 24, 27, 30, 378
GluI	GCNGC	5 cut(s)	16, 24, 27, 30, 378
HaeIII	GGCC	5 cut(s)	5, 44, 96, 115, 143
Hin1II	CATG	1 cut(s)	386
HinfI	GANTC	2 cut(s)	353, 407
HphI	GGTGA	2 cut(s)	286, 403
Hpy188I	TCNGA	4 cut(s)	230, 254, 284, 309
Hpy188III	TCNNGA	2 cut(s)	67, 350
Hpy99I	CGWCG	2 cut(s)	86, 428
HpyCH4III	ACNGT	2 cut(s)	197, 206
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	4 cut(s)	117, 227, 306, 330
Hsp92II	CATG	1 cut(s)	386
Kzo9I	GATC	4 cut(s)	214, 279, 385, 420
Lsp1109I	GCAGC	5 cut(s)	27, 35, 38, 41, 364
LweI	GCATC	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	206, 292
MalI	GATC	4 cut(s)	216, 281, 387, 422
MboI	GATC	4 cut(s)	214, 279, 385, 420
MboII	GAAGA	3 cut(s)	194, 338, 406
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	38, 242
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	7 cut(s)	28, 104, 232, 256, 270, 359, 429
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	219, 448
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	4 cut(s)	7, 92, 98, 302
MvaI	CCWGG	4 cut(s)	7, 92, 98, 302
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	4 cut(s)	214, 279, 385, 420
NlaIII	CATG	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	17, 25, 28, 31, 379
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	4 cut(s)	5, 90, 96, 300
PspGI	CCWGG	4 cut(s)	5, 90, 96, 300
PspPI	GGNCC	2 cut(s)	94, 113
SaqAI	TTAA	2 cut(s)	219, 448
SatI	GCNGC	5 cut(s)	16, 24, 27, 30, 378
Sau3AI	GATC	4 cut(s)	214, 279, 385, 420
Sau96I	GGNCC	2 cut(s)	94, 113
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	4 cut(s)	7, 92, 98, 302
SetI	ASST	5 cut(s)	77, 167, 181, 213, 250
SfaNI	GCATC	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	137, 350
SmoI	CTYRAG	2 cut(s)	137, 350
Sse9I	AATT	2 cut(s)	38, 242
SsiI	CCGC	2 cut(s)	32, 121
StyD4I	CCNGG	4 cut(s)	5, 90, 96, 300
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	197, 206
TaqI	TCGA	3 cut(s)	318, 351, 423
TasI	AATT	2 cut(s)	38, 242
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	219, 448
Tru9I	TTAA	2 cut(s)	219, 448
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	5 cut(s)	15, 23, 26, 29, 377
Tsp45I	GTSAC	1 cut(s)	292
TspRI	CASTG	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.