Rh6AG083500

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001597
Physical Location & Seq
Reverse (-)
12500761 .. 12506340
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG083500.1

Sequence Viewer

Length: 573 bp
ATGGCCATGGATGGCAGCAATGCAGCAGCAGCGGAGGAATTGGTCGTGGGTTGCTTTGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGATACTCAGTTGAATAATGTAGTGTTTGGTGTGTTTAATTGCAGACAAGCAGAGGCAGTGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACATTCATCGAGGAGATCCAGACCTTAACCCAATCTCCTCATAGTCATCCATTTTCTGGCCGACGCGATGTTCCTCGACAACTCACCGATTTCGAAGAGCCCAAAGTTGAGGCGGAGCAAGAGGAGCACACTAATATCCAGACCCGAGCCAAGGCTGTAGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

190

Amino Acids

21.1

Weight (kDa)

5.07

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 13 - 68 5.4e-13 LSM12, LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 461
AccII CGCG 1 cut(s) 471
AciI CCGC 4 cut(s) 32, 115, 166, 518
AclWI GGATC 2 cut(s) 359, 415
AcoI YGGCCR 2 cut(s) 3, 463
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 4 cut(s) 97, 142, 461, 556
AgsI TTSAA 3 cut(s) 140, 151, 295
AjnI CCWGG 3 cut(s) 90, 96, 372
AluBI AGCT 2 cut(s) 210, 224
AluI AGCT 2 cut(s) 210, 224
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 2 cut(s) 359, 415
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 5 cut(s) 3, 94, 158, 186, 463
ApeKI GCWGC 4 cut(s) 15, 23, 26, 29
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 94, 158
AsuHPI GGTGA 3 cut(s) 97, 358, 481
AsuII TTCGAA 1 cut(s) 498
AvaI CYCGRG 1 cut(s) 549
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 27, 35, 38, 41
BccI CCATC 2 cut(s) 5, 71
BciT130I CCWGG 3 cut(s) 92, 98, 374
BcoDI GTCTC 2 cut(s) 64, 275
BfmI CTRYAG 1 cut(s) 561
BisI GCNGC 4 cut(s) 16, 24, 27, 30
BlsI GCNGC 4 cut(s) 17, 25, 28, 31
Bme1390I CCNGG 3 cut(s) 92, 98, 374
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 94, 158
BmrFI CCNGG 3 cut(s) 92, 98, 374
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 6, 75, 91, 555
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 348, 378, 424, 454
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 142, 461, 556
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 92, 98, 374
BseDI CCNNGG 4 cut(s) 6, 75, 91, 555
BseGI GGATG 4 cut(s) 16, 126, 132, 451
BseLI CCNNNNNNNGG 4 cut(s) 97, 142, 461, 556
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 286, 302, 392
BseRI GAGGAG 3 cut(s) 431, 432, 542
BseXI GCAGC 4 cut(s) 27, 35, 38, 41
Bsh1236I CGCG 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 5, 96, 160, 188, 465
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 549
BslI CCNNNNNNNGG 4 cut(s) 97, 142, 461, 556
BsmAI GTCTC 2 cut(s) 64, 275
BsnI GGCC 5 cut(s) 5, 96, 160, 188, 465
BsoBI CYCGRG 1 cut(s) 549
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 507, 534
Bsp143I GATC 3 cut(s) 259, 351, 420
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 32, 115, 166, 518
BspANI GGCC 5 cut(s) 5, 96, 160, 188, 465
BspCNI CTCAG 3 cut(s) 285, 301, 391
BspFNI CGCG 1 cut(s) 471
BspPI GGATC 2 cut(s) 359, 415
BspQI GCTCTTC 1 cut(s) 495
BspT104I TTCGAA 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 6, 75, 91, 555
BssMI GATC 3 cut(s) 259, 351, 420
BssT1I CCWWGG 3 cut(s) 6, 75, 555
Bst2UI CCWGG 3 cut(s) 92, 98, 374
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 498
BstDEI CTNAG 5 cut(s) 162, 272, 288, 378, 402
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 16, 126, 132, 451
BstFNI CGCG 1 cut(s) 471
BstKTI GATC 3 cut(s) 262, 354, 423
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 3 cut(s) 259, 351, 420
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 29, 529
BstNI CCWGG 3 cut(s) 92, 98, 374
BstSCI CCNGG 3 cut(s) 90, 96, 372
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 4 cut(s) 27, 35, 38, 41
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 5 cut(s) 5, 96, 160, 188, 465
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 4 cut(s) 16, 126, 132, 451
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 94, 158
CseI GACGC 1 cut(s) 477
CviAII CATG 1 cut(s) 7
DdeI CTNAG 5 cut(s) 162, 272, 288, 378, 402
DpnI GATC 3 cut(s) 261, 353, 422
DpnII GATC 3 cut(s) 259, 351, 420
EaeI YGGCCR 2 cut(s) 3, 463
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 533
Eco130I CCWWGG 3 cut(s) 6, 75, 555
Eco24I GRGCYC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 549
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 90, 96, 372
EcoT14I CCWWGG 3 cut(s) 6, 75, 555
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 3 cut(s) 6, 75, 555
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 195, 447
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 16, 24, 27, 30
FokI GGATG 4 cut(s) 23, 113, 119, 438
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 4 cut(s) 16, 24, 27, 30
GluI GCNGC 4 cut(s) 16, 24, 27, 30
HaeIII GGCC 5 cut(s) 5, 96, 160, 188, 465
HgaI GACGC 1 cut(s) 477
Hin1II CATG 1 cut(s) 10
HphI GGTGA 3 cut(s) 97, 358, 481
Hpy188I TCNGA 3 cut(s) 275, 356, 381
Hpy188III TCNNGA 4 cut(s) 67, 140, 424, 544
Hpy99I CGWCG 2 cut(s) 86, 471
HpyAV CCTTC 2 cut(s) 118, 146
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 23, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 529
HpyF3I CTNAG 5 cut(s) 162, 272, 288, 378, 402
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 3 cut(s) 259, 351, 420
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 520, 529
Lsp1109I GCAGC 4 cut(s) 27, 35, 38, 41
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 251, 364
MalI GATC 3 cut(s) 261, 353, 422
MboI GATC 3 cut(s) 259, 351, 420
MboII GAAGA 2 cut(s) 239, 512
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 507, 534
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 38, 319
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 243, 264, 318, 431
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 92, 98, 374
MvaI CCWGG 3 cut(s) 92, 98, 374
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 29, 529
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 259, 351, 420
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 364
NspV TTCGAA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 4 cut(s) 17, 25, 28, 31
Psp6I CCWGG 3 cut(s) 90, 96, 372
PspGI CCWGG 3 cut(s) 90, 96, 372
PspPI GGNCC 2 cut(s) 94, 158
PsuI RGATCY 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 4 cut(s) 243, 264, 318, 431
SatI GCNGC 4 cut(s) 16, 24, 27, 30
Sau3AI GATC 3 cut(s) 259, 351, 420
Sau96I GGNCC 2 cut(s) 94, 158
ScrFI CCNGG 3 cut(s) 92, 98, 374
SduI GDGCHC 2 cut(s) 507, 534
SetI ASST 7 cut(s) 77, 102, 110, 212, 226, 258, 431
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 38, 319
SsiI CCGC 4 cut(s) 32, 115, 166, 518
StyD4I CCNGG 3 cut(s) 90, 96, 372
StyI CCWWGG 3 cut(s) 6, 75, 555
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 111, 390, 414, 481, 498
TasI AATT 2 cut(s) 38, 319
Tru1I TTAA 4 cut(s) 243, 264, 318, 431
Tru9I TTAA 4 cut(s) 243, 264, 318, 431
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 15, 23, 26, 29
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 400
TspRI CASTG 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.