Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Forward (+)

23879158 .. 23880318

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCATGGATGGCGGCAATGCAGCAGCAGCGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGTCATCACCTTCGACTGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGAGGAATCAGCTATCAGACAAGCAGAGGCAGAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACGCTTCCAGTACGCTGGGACAAGACTGTCATAGTTGTGATGAATGAGGTTCGTGTGAGCAGTCCATATCTTCCTGAGTCTGTCAGTGGAGGAACTCCTGCTGCCAATGATCGGGTGAAGAAAGTGCTTGAGTTGGAGAAGACTTTTCCCTCAAGGGATAAGTCATTGTGGGTATACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

186

Amino Acids

20.46

Weight (kDa)

5.17

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM12_LSM	PF21166	12 - 68	7.8e-13	LSM12, LSM domain
AD	PF09793	86 - 168	5e-26	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	3 cut(s)	15, 32, 166
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	2 cut(s)	3, 42
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	97, 142, 489
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	140, 151
AjnI	CCWGG	3 cut(s)	90, 96, 345
AluBI	AGCT	3 cut(s)	210, 224, 293
AluI	AGCT	3 cut(s)	210, 224, 293
Alw26I	GTCTC	2 cut(s)	64, 275
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	5 cut(s)	3, 42, 94, 158, 186
ApeKI	GCWGC	4 cut(s)	23, 26, 29, 479
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	94, 158
AsuHPI	GGTGA	3 cut(s)	97, 331, 505
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	234, 524
BbvI	GCAGC	4 cut(s)	35, 38, 41, 466
BccI	CCATC	2 cut(s)	5, 71
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	92, 98, 347
BcoDI	GTCTC	2 cut(s)	64, 275
BisI	GCNGC	5 cut(s)	16, 24, 27, 30, 480
BlsI	GCNGC	5 cut(s)	17, 25, 28, 31, 481
Bme1390I	CCNGG	3 cut(s)	92, 98, 347
BmgT120I	GGNCC	2 cut(s)	94, 158
BmrFI	CCNGG	3 cut(s)	92, 98, 347
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	234, 524
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	3 cut(s)	167, 514, 527
BsaJI	CCNNGG	4 cut(s)	6, 45, 75, 91
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 321, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 142, 489
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	3 cut(s)	92, 98, 347
BseDI	CCNNGG	4 cut(s)	6, 45, 75, 91
BseGI	GGATG	3 cut(s)	16, 126, 132
BseLI	CCNNNNNNNGG	3 cut(s)	97, 142, 489
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	286, 365, 444
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	35, 38, 41, 466
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	5 cut(s)	5, 44, 96, 160, 188
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	97, 142, 489
BsmAI	GTCTC	2 cut(s)	64, 275
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	5 cut(s)	5, 44, 96, 160, 188
Bsp143I	GATC	3 cut(s)	259, 324, 487
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	15, 32, 166
BspANI	GGCC	5 cut(s)	5, 44, 96, 160, 188
BspCNI	CTCAG	3 cut(s)	285, 364, 445
BspPI	GGATC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	4 cut(s)	6, 45, 75, 91
BssMI	GATC	3 cut(s)	259, 324, 487
BssNAI	GTATAC	1 cut(s)	553
BssT1I	CCWWGG	2 cut(s)	6, 75
Bst1107I	GTATAC	1 cut(s)	553
Bst2UI	CCWGG	3 cut(s)	92, 98, 347
Bst4CI	ACNGT	2 cut(s)	251, 406
BstDEI	CTNAG	5 cut(s)	162, 272, 351, 375, 453
BstDSI	CCRYGG	2 cut(s)	6, 45
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	16, 126, 132
BstKTI	GATC	3 cut(s)	262, 327, 490
BstMAI	GTCTC	2 cut(s)	64, 275
BstMBI	GATC	3 cut(s)	259, 324, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	3 cut(s)	92, 98, 347
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	90, 96, 345
BstV1I	GCAGC	4 cut(s)	35, 38, 41, 466
BstV2I	GAAGAC	2 cut(s)	234, 524
BstXI	CCANNNNNNTGG	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	553
BsuRI	GGCC	5 cut(s)	5, 44, 96, 160, 188
BtgI	CCRYGG	2 cut(s)	6, 45
BtsCI	GGATG	3 cut(s)	16, 126, 132
BtsIMutI	CAGTG	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	94, 158
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	7, 556
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	5 cut(s)	162, 272, 351, 375, 453
DpnI	GATC	3 cut(s)	261, 326, 489
DpnII	GATC	3 cut(s)	259, 324, 487
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	2 cut(s)	3, 42
Eco130I	CCWWGG	2 cut(s)	6, 75
Eco57I	CTGAAG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	90, 96, 345
EcoT14I	CCWWGG	2 cut(s)	6, 75
ErhI	CCWWGG	2 cut(s)	6, 75
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	10, 559
FaiI	YATR	6 cut(s)	8, 195, 410, 445, 553, 557
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 219, 251
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	2 cut(s)	6, 555
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	5 cut(s)	16, 24, 27, 30, 480
FokI	GGATG	3 cut(s)	23, 113, 119
Fsp4HI	GCNGC	5 cut(s)	16, 24, 27, 30, 480
GluI	GCNGC	5 cut(s)	16, 24, 27, 30, 480
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	5 cut(s)	5, 44, 96, 160, 188
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	10, 559
HinfI	GANTC	2 cut(s)	287, 455
HphI	GGTGA	3 cut(s)	97, 331, 505
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	4 cut(s)	275, 299, 329, 354
Hpy188III	TCNNGA	3 cut(s)	67, 140, 452
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	118, 146
HpyCH4III	ACNGT	2 cut(s)	251, 406
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	5 cut(s)	162, 272, 351, 375, 453
Hsp92II	CATG	2 cut(s)	10, 559
Kzo9I	GATC	3 cut(s)	259, 324, 487
Lsp1109I	GCAGC	4 cut(s)	35, 38, 41, 466
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	251, 337
MalI	GATC	3 cut(s)	261, 326, 489
MboI	GATC	3 cut(s)	259, 324, 487
MboII	GAAGA	4 cut(s)	239, 440, 508, 529
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	147, 492
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	243, 264
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	92, 98, 347
MvaI	CCWGG	3 cut(s)	92, 98, 347
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	259, 324, 487
NlaIII	CATG	2 cut(s)	10, 559
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	559
PciI	ACATGT	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	17, 25, 28, 31, 481
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PscI	ACATGT	1 cut(s)	555
Psp6I	CCWGG	3 cut(s)	90, 96, 345
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	90, 96, 345
PspPI	GGNCC	2 cut(s)	94, 158
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	243, 264
SatI	GCNGC	5 cut(s)	16, 24, 27, 30, 480
Sau3AI	GATC	3 cut(s)	259, 324, 487
Sau96I	GGNCC	2 cut(s)	94, 158
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	3 cut(s)	92, 98, 347
SetI	ASST	8 cut(s)	77, 102, 110, 212, 226, 258, 295, 429
SfaNI	GCATC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	182, 506, 529
SmoI	CTYRAG	3 cut(s)	182, 506, 529
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	15, 32, 166
StyD4I	CCNGG	3 cut(s)	90, 96, 345
StyI	CCWWGG	2 cut(s)	6, 75
TaaI	ACNGT	2 cut(s)	251, 406
TaqI	TCGA	2 cut(s)	111, 363
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	243, 264
Tru9I	TTAA	2 cut(s)	243, 264
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	23, 26, 29, 479
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	140
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.