Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001597

Physical Location & Seq

Genomic Coordinates Reverse (-)

6079741 .. 6081329

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCATGGATGGCAGCAACACGGAGGAGTTTGCCATCGGGAGCTTCGTCAAAATCAAGACCACGCTCAGCGACGAGTTCCAAGGCCAAGTCATCACCTTCGATCGCCCCTCCAACATCGTCGGTTCGAAAGGCGGAGCGCGGCGGAACATACGGCTGCTGAAGGCGAACTATATAAAGGAGCTGTCATACTCAGGTCAGGCGGAAGACCCGCTCGATATCAAAAAGTGTTATCTTGATCTCAATAGTCTCCGGGCCAGGGAGGAACTGGCGATTAGGCAAGCAGAGGCGGAGTCGGAGCGGATTGGCGTCGGAGTCACCGCCCAGGCGCAGAACATTTTCGATGCCTTGTCTAAGACGCTTCCAGTGCGCTGGGACAAGACTGTAATAGTTGTGATGAATGAGGTCCGAGTAAGCAGTCCATATACTCCTGAGTCTGTCAGTGGAGGAACTCCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAGCTGGAGAGGAGGAGGTTACAAACTCGTGGCGGTGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

177

Amino Acids

19.46

Weight (kDa)

9.04

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM12_LSM	PF21166	9 - 61	3.8e-09	LSM12, LSM domain
AD	PF09793	79 - 161	1e-26	Anticodon-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24050 AT1G70220 AT1G70220
fragaria_vesca	FvH4_4g34930
malus_domestica	MD13G1087800.v1.1 MD16G1088100.v1.1
prunus_persica	Prupe.1G258500_v2.0.a1 Prupe.1G258600_v2.0.a1
pyrus_communis	pycom13g07550
rosa_chinensis	RchiOBHm_Chr1g0347741 RchiOBHm_Chr2g0143691 RchiOBHm_Chr3g0467191 RchiOBHm_Chr4g0444371 RchiOBHm_Chr4g0444381 RchiOBHm_Chr5g0030111 RchiOBHm_Chr7g0224821
rosa_laevigata	RLG00000005836
rosa_multiflora	Rmu_sc0000962.1_g000074 Rmu_sc0001209.1_g000005 Rmu_sc0006184.1_g000013 Rmu_sc0011110.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369700 Rroxscaffold_5G00384910
rosa_rugosa	Rorug01G0030100 Rorug04G0111300 Rorug04G0352300 Rorug04G0352400
rosa_samantha	Rh1AG203300 Rh1CG051400 Rh1CG188600 Rh1DG055700 Rh3AG134000 Rh3BG155300 Rh4AG231500 Rh4AG412700 Rh4BG424200 Rh4CG438500 Rh4DG419500 Rh5DG213500 Rh6AG083500 Rh6BG138800 Rh6CG072700 Rh6CG136300 Rh6DG069900 Rh6DG122500 Rh7AG494600
rosa_wichuraiana	Rw1G006150 Rw1G007330 Rw3G012680 Rw4G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	214, 301, 469
AccII	CGCG	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	259, 468
AjnI	CCWGG	2 cut(s)	257, 324
AluBI	AGCT	3 cut(s)	45, 184, 490
AluI	AGCT	3 cut(s)	45, 184, 490
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	3 cut(s)	3, 85, 255
ApeKI	GCWGC	3 cut(s)	15, 157, 458
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	142, 331, 372
AspS9I	GGNCC	2 cut(s)	255, 406
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	88, 310, 484
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	27, 144, 445
BccI	CCATC	2 cut(s)	5, 44
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	259, 326
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	16, 143, 158, 459
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	4 cut(s)	17, 144, 159, 460
Bme1390I	CCNGG	3 cut(s)	254, 259, 326
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	255, 406
BmrFI	CCNGG	3 cut(s)	254, 259, 326
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	512
Bpu1102I	GCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	6, 82, 258, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 468
Bse1I	ACTGG	2 cut(s)	273, 365
BseBI	CCWGG	2 cut(s)	259, 326
BseDI	CCNNGG	4 cut(s)	6, 82, 258, 324
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	259, 468
BseMII	CTCAG	3 cut(s)	82, 207, 423
BseNI	ACTGG	2 cut(s)	273, 365
BseRI	GAGGAG	3 cut(s)	41, 511, 514
BseXI	GCAGC	3 cut(s)	27, 144, 445
BseYI	CCCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	5, 87, 257
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	259, 468
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	5, 87, 257
Bsp119I	TTCGAA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	103, 238
Bsp1720I	GCTNAGC	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	6
BspANI	GGCC	3 cut(s)	5, 87, 257
BspCNI	CTCAG	3 cut(s)	81, 206, 424
BspFNI	CGCG	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	128
BsrBI	CCGCTC	3 cut(s)	214, 301, 469
BsrI	ACTGG	2 cut(s)	273, 365
BssECI	CCNNGG	4 cut(s)	6, 82, 258, 324
BssMI	GATC	2 cut(s)	103, 238
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	6, 82
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	259, 326
Bst4CI	ACNGT	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	68, 193, 354, 432
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	3 cut(s)	142, 331, 372
BstKTI	GATC	2 cut(s)	106, 241
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	103, 238
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	259, 326
BstSCI	CCNGG	3 cut(s)	252, 257, 324
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	27, 144, 445
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	5, 87, 257
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	372, 448
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	3 cut(s)	142, 331, 372
Cfr13I	GGNCC	2 cut(s)	255, 406
CseI	GACGC	2 cut(s)	298, 367
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	7 cut(s)	5, 45, 87, 157, 184, 257, 490
CviKI_1	RGCY	7 cut(s)	5, 45, 87, 157, 184, 257, 490
DdeI	CTNAG	4 cut(s)	68, 193, 354, 432
DpnI	GATC	2 cut(s)	105, 240
DpnII	GATC	2 cut(s)	103, 238
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	4 cut(s)	150, 160, 218, 305
Eco130I	CCWWGG	2 cut(s)	6, 82
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	257, 324
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	6, 82
ErhI	CCWWGG	2 cut(s)	6, 82
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 152, 174, 176, 190, 424, 426
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	6
FauI	CCCGC	2 cut(s)	219, 462
Fnu4HI	GCNGC	4 cut(s)	16, 143, 158, 459
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	16, 143, 158, 459
GlaI	GCGC	3 cut(s)	141, 330, 371
GluI	GCNGC	4 cut(s)	16, 143, 158, 459
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	5, 87, 257
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	2 cut(s)	298, 367
HhaI	GCGC	3 cut(s)	142, 331, 372
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	3 cut(s)	140, 329, 370
HinP1I	GCGC	3 cut(s)	140, 329, 370
HinfI	GANTC	3 cut(s)	293, 315, 434
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	3 cut(s)	88, 310, 484
Hpy188I	TCNGA	3 cut(s)	298, 314, 410
Hpy188III	TCNNGA	4 cut(s)	40, 58, 236, 431
Hpy99I	CGWCG	3 cut(s)	77, 125, 314
HpyAV	CCTTC	2 cut(s)	109, 157
HpyCH4III	ACNGT	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	4 cut(s)	68, 193, 354, 432
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	3 cut(s)	140, 329, 370
Kzo9I	GATC	2 cut(s)	103, 238
LmnI	GCTCC	4 cut(s)	42, 137, 181, 298
Lsp1109I	GCAGC	3 cut(s)	27, 144, 445
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	316, 504
MalI	GATC	2 cut(s)	105, 240
MbiI	CCGCTC	3 cut(s)	214, 301, 469
MboI	GATC	2 cut(s)	103, 238
MboII	GAAGA	2 cut(s)	218, 487
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	302, 324, 443
MmeI	TCCRAC	3 cut(s)	138, 276, 292
MnlI	CCTC	9 cut(s)	19, 121, 256, 280, 397, 440, 489, 492, 495
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	3 cut(s)	254, 259, 326
MvaI	CCWGG	2 cut(s)	259, 326
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	103, 238
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	17, 144, 159, 460
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	3 cut(s)	301, 323, 442
PpsI	GAGTC	3 cut(s)	301, 323, 442
Psp6I	CCWGG	2 cut(s)	257, 324
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	2 cut(s)	257, 324
PspPI	GGNCC	2 cut(s)	255, 406
PvuI	CGATCG	1 cut(s)	106
SatI	GCNGC	4 cut(s)	16, 143, 158, 459
Sau3AI	GATC	2 cut(s)	103, 238
Sau96I	GGNCC	2 cut(s)	255, 406
SchI	GAGTC	3 cut(s)	302, 324, 443
ScrFI	CCNGG	3 cut(s)	254, 259, 326
SetI	ASST	7 cut(s)	47, 101, 186, 199, 408, 492, 506
SfaNI	GCATC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	252, 257, 324
StyI	CCWWGG	2 cut(s)	6, 82
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	102, 128, 216, 342
TauI	GCSGC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	372, 448
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	15, 157, 458
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	372, 448
VpaK11BI	GGWCC	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.