Rh5DG213500

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001597
Physical Location & Seq
Forward (+)
23927859 .. 23936190
8332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG213500.1

Sequence Viewer

Length: 885 bp
ATGGCCATGGATGGCGGCAATGCAGCAGCAGCGGAGGAATTGGCCGTGGGTTGCTTCGTCTCCATCAAGACCACCTTGGGCGACGACTTCCAGGGCCAGGTCATCACCTTCGACTGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCAGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGCTGAAGACCCACTTGACATTAAGAACTGTTACCTTGATCTTAATAGTCTCAGAGCCAGAGAGGAATCAGCTATCAGACAAGCAGAGGCAGAGTGTGAGAGGATCGGAGTTGGTGTCACCAGCCAGGCTCAGAACATTTTCGATGCCTTGTCTAAGACGCTTCCAGTACGCTGGGACAAGACTGTCATAGTTGTGATGAATGAGGTTCGTGTGAGCAGTCCATATCTTCCTGAGTCTGTCAGTGGAGGAACTCCTGCTGCCAATGATCGGGTGAAGAAAGTGCTTGAGTTGGAGAAGACTTTTCCCTCAAGGGATAAGTCATTGTGGGTATGTTTGTATACTCAGCCTTCTCTGAGGGGAGCATTATCTTTTTTTTTAAGACATGTGAAGCTCAAGATAAATTGTTTAATCATGGTGGTAAAATTGATTAAATGCAAGTATGGTGGTATGGTGGTCTTGCTGTCAAGACCCCATCAGCAAGCTGTAGCTATTGAGAAACAACAGCGTAAGTCTAGCACTCGACCTTATACCAGAATTGGTACCAACTCAGTGAACCAGCAAGCATTTGGTGGATGGGGACCTGCAAAATCTGGTCAAATAGGGGCTCAAAATTCGTCTACAGCAATAGGAAATCGGCCCACTACTTCAAGACCAGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

294

Amino Acids

32.18

Weight (kDa)

9.49

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM12_LSM PF21166 12 - 68 1.8e-12 LSM12, LSM domain
AD PF09793 86 - 168 1.3e-25 Anticodon-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 811
Acc65I GGTACC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 761
AccI GTMKAC 2 cut(s) 560, 839
AciI CCGC 3 cut(s) 15, 32, 166
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 2 cut(s) 3, 42
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 390, 763
AfiI CCNNNNNNNGG 3 cut(s) 97, 142, 489
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 3 cut(s) 140, 151, 870
AjnI CCWGG 3 cut(s) 90, 96, 345
AluBI AGCT 6 cut(s) 210, 224, 293, 613, 704, 710
AluI AGCT 6 cut(s) 210, 224, 293, 613, 704, 710
Alw26I GTCTC 2 cut(s) 64, 275
AlwI GGATC 1 cut(s) 332
AoxI GGCC 6 cut(s) 3, 42, 94, 158, 186, 857
ApeKI GCWGC 4 cut(s) 23, 26, 29, 479
ApoI RAATTY 1 cut(s) 832
Asp700I GAANNNNTTC 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 761
AspS9I GGNCC 4 cut(s) 94, 158, 800, 858
AsuHPI GGTGA 3 cut(s) 97, 331, 505
AvaII GGWCC 1 cut(s) 800
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 1 cut(s) 829
BbsI GAAGAC 2 cut(s) 234, 524
BbvI GCAGC 4 cut(s) 35, 38, 41, 466
BccI CCATC 4 cut(s) 5, 71, 702, 789
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 92, 98, 347
BcoDI GTCTC 2 cut(s) 64, 275
BfaI CTAG 1 cut(s) 735
BfmI CTRYAG 2 cut(s) 705, 840
BfuAI ACCTGC 1 cut(s) 811
BisI GCNGC 5 cut(s) 16, 24, 27, 30, 480
BlsI GCNGC 5 cut(s) 17, 25, 28, 31, 481
Bme1390I CCNGG 3 cut(s) 92, 98, 347
Bme18I GGWCC 1 cut(s) 800
BmgT120I GGNCC 4 cut(s) 94, 158, 800, 858
BmiI GGNNCC 2 cut(s) 763, 801
BmrFI CCNGG 3 cut(s) 92, 98, 347
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 234, 524
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 4 cut(s) 167, 514, 527, 599
BsaJI CCNNGG 4 cut(s) 6, 45, 75, 91
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 321, 351
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 142, 489
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 92, 98, 347
BseDI CCNNGG 4 cut(s) 6, 45, 75, 91
BseGI GGATG 4 cut(s) 16, 126, 132, 800
BseLI CCNNNNNNNGG 3 cut(s) 97, 142, 489
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 6 cut(s) 286, 365, 444, 566, 578, 783
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 4 cut(s) 35, 38, 41, 466
BseYI CCCAGC 1 cut(s) 393
BshFI GGCC 6 cut(s) 5, 44, 96, 160, 188, 859
BshNI GGYRCC 1 cut(s) 761
BslFI GGGAC 2 cut(s) 410, 813
BslI CCNNNNNNNGG 3 cut(s) 97, 142, 489
BsmAI GTCTC 2 cut(s) 64, 275
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 2 cut(s) 410, 813
BsnI GGCC 6 cut(s) 5, 44, 96, 160, 188, 859
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 3 cut(s) 259, 324, 487
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 15, 32, 166
BspANI GGCC 6 cut(s) 5, 44, 96, 160, 188, 859
BspCNI CTCAG 6 cut(s) 285, 364, 445, 567, 577, 782
BspLI GGNNCC 2 cut(s) 763, 801
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 4 cut(s) 6, 45, 75, 91
BssMI GATC 3 cut(s) 259, 324, 487
BssNAI GTATAC 1 cut(s) 561
BssT1I CCWWGG 2 cut(s) 6, 75
Bst1107I GTATAC 1 cut(s) 561
Bst2UI CCWGG 3 cut(s) 92, 98, 347
Bst4CI ACNGT 2 cut(s) 251, 406
BstC8I GCNNGC 2 cut(s) 702, 783
BstDEI CTNAG 8 cut(s) 162, 272, 351, 375, 453, 564, 575, 769
BstDSI CCRYGG 2 cut(s) 6, 45
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 16, 126, 132, 800
BstKTI GATC 3 cut(s) 262, 327, 490
BstMAI GTCTC 2 cut(s) 64, 275
BstMBI GATC 3 cut(s) 259, 324, 487
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 92, 98, 347
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 90, 96, 345
BstSFI CTRYAG 2 cut(s) 705, 840
BstV1I GCAGC 4 cut(s) 35, 38, 41, 466
BstV2I GAAGAC 2 cut(s) 234, 524
BstXI CCANNNNNNTGG 1 cut(s) 393
BstZ17I GTATAC 1 cut(s) 561
BsuRI GGCC 6 cut(s) 5, 44, 96, 160, 188, 859
BtgI CCRYGG 2 cut(s) 6, 45
BtsCI GGATG 4 cut(s) 16, 126, 132, 800
BtsIMutI CAGTG 2 cut(s) 469, 777
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 702, 783
Cfr13I GGNCC 4 cut(s) 94, 158, 800, 858
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 389, 762
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 3 cut(s) 7, 605, 634
CviQI GTAC 2 cut(s) 389, 762
DdeI CTNAG 8 cut(s) 162, 272, 351, 375, 453, 564, 575, 769
DpnI GATC 3 cut(s) 261, 326, 489
DpnII GATC 3 cut(s) 259, 324, 487
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 3, 42
Eco130I CCWWGG 2 cut(s) 6, 75
Eco24I GRGCYC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 158, 800
EcoRII CCWGG 3 cut(s) 90, 96, 345
EcoT14I CCWWGG 2 cut(s) 6, 75
EcoT38I GRGCYC 1 cut(s) 829
ErhI CCWWGG 2 cut(s) 6, 75
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 3 cut(s) 10, 608, 637
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 219, 251
FaqI GGGAC 2 cut(s) 410, 813
FatI CATG 3 cut(s) 6, 604, 633
FblI GTMKAC 2 cut(s) 560, 839
Fnu4HI GCNGC 5 cut(s) 16, 24, 27, 30, 480
FokI GGATG 4 cut(s) 23, 113, 119, 807
FriOI GRGCYC 1 cut(s) 829
Fsp4HI GCNGC 5 cut(s) 16, 24, 27, 30, 480
FspBI CTAG 1 cut(s) 735
GluI GCNGC 5 cut(s) 16, 24, 27, 30, 480
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 6 cut(s) 5, 44, 96, 160, 188, 859
HgaI GACGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 10, 608, 637
HinfI GANTC 2 cut(s) 287, 455
HphI GGTGA 3 cut(s) 97, 331, 505
Hpy166II GTNNAC 3 cut(s) 561, 775, 840
Hpy188I TCNGA 5 cut(s) 275, 299, 329, 354, 576
Hpy188III TCNNGA 6 cut(s) 67, 140, 452, 616, 687, 870
Hpy8I GTNNAC 3 cut(s) 561, 775, 840
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 118, 146, 579
HpyCH4III ACNGT 2 cut(s) 251, 406
HpyCH4V TGCA 3 cut(s) 23, 657, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 8 cut(s) 162, 272, 351, 375, 453, 564, 575, 769
Hsp92II CATG 3 cut(s) 10, 608, 637
KpnI GGTACC 1 cut(s) 765
Kzo9I GATC 3 cut(s) 259, 324, 487
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 4 cut(s) 35, 38, 41, 466
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 735
MaeIII GTNAC 2 cut(s) 251, 337
MalI GATC 3 cut(s) 261, 326, 489
MboI GATC 3 cut(s) 259, 324, 487
MboII GAAGA 4 cut(s) 239, 440, 508, 529
MhlI GDGCHC 1 cut(s) 829
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 38, 622, 644, 756, 832
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 147, 492
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 359
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 243, 264, 599, 629, 651
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 92, 98, 347
MvaI CCWGG 3 cut(s) 92, 98, 347
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 259, 324, 487
NlaIII CATG 3 cut(s) 10, 608, 637
NlaIV GGNNCC 2 cut(s) 763, 801
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 608
PciI ACATGT 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 5 cut(s) 17, 25, 28, 31, 481
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 800
PscI ACATGT 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 3 cut(s) 90, 96, 345
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 3 cut(s) 90, 96, 345
PspN4I GGNNCC 2 cut(s) 763, 801
PspPI GGNCC 4 cut(s) 94, 158, 800, 858
PspPPI RGGWCCY 1 cut(s) 800
RsaI GTAC 2 cut(s) 390, 763
RsaNI GTAC 2 cut(s) 389, 762
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 5 cut(s) 243, 264, 599, 629, 651
SatI GCNGC 5 cut(s) 16, 24, 27, 30, 480
Sau3AI GATC 3 cut(s) 259, 324, 487
Sau96I GGNCC 4 cut(s) 94, 158, 800, 858
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 92, 98, 347
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 2 cut(s) 705, 840
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 4 cut(s) 182, 506, 529, 614
SmoI CTYRAG 4 cut(s) 182, 506, 529, 614
Sse9I AATT 5 cut(s) 38, 622, 644, 756, 832
SsiI CCGC 3 cut(s) 15, 32, 166
SspMI CTAG 1 cut(s) 735
StyD4I CCNGG 3 cut(s) 90, 96, 345
StyI CCWWGG 2 cut(s) 6, 75
TaaI ACNGT 2 cut(s) 251, 406
TaqI TCGA 3 cut(s) 111, 363, 742
TasI AATT 5 cut(s) 38, 622, 644, 756, 832
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 5 cut(s) 243, 264, 599, 629, 651
Tru9I TTAA 5 cut(s) 243, 264, 599, 629, 651
TscAI CASTG 2 cut(s) 469, 777
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 4 cut(s) 23, 26, 29, 479
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 2 cut(s) 469, 777
VpaK11BI GGWCC 1 cut(s) 800
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 832
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 785
XmiI GTMKAC 2 cut(s) 560, 839
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.