Rroxscaffold_5G00369700

Anticodon-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001597
Physical Location & Seq
Reverse (-)
51516557 .. 51520555
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369700.1

Sequence Viewer

Length: 303 bp
ATGGGAGAGATGCGGGGATGGTGGCATGGTGCTGCTTTCGCCGAGCTACGATGCTCGCTCGGGACGAAAGGCCTCGCCCAAGAAGACATGGGAGGCGGCCAGGTCATCACCTTCGACCGCCCCTCCAACATCCTCATCCTTCAAGAGGGTTTGAAAGGAGGGCCTAAGCGGAACATCGGGCTACTCAAGGCCAACTATATCAAGGAGTTGAGCTATTTGGGTCAAGTCAAGACCCACTTGACGTTAAGAACTGTTACCTTGATCTTAATAGTCTCGAGCCGAGAGGAATCAGCTATCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AD

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

9.3

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 13, 96, 118, 169
AcoI YGGCCR 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 143, 154
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 46, 213, 293
AluI AGCT 3 cut(s) 46, 213, 293
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 59, 274
AoxI GGCC 4 cut(s) 70, 97, 161, 189
ApeKI GCWGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 2 cut(s) 59, 274
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 277
BisI GCNGC 2 cut(s) 33, 97
BlsI GCNGC 2 cut(s) 34, 98
Bme1390I CCNGG 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 59, 274
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 101
BseGI GGATG 3 cut(s) 23, 129, 135
BseLI CCNNNNNNNGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 4 cut(s) 72, 99, 163, 191
BsiEI CGRYCG 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 59, 274
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 4 cut(s) 72, 99, 163, 191
BsoBI CYCGRG 2 cut(s) 59, 274
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 4 cut(s) 13, 96, 118, 169
BspANI GGCC 4 cut(s) 72, 99, 163, 191
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 23, 129, 135
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 261
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 72, 99, 163, 191
BtsCI GGATG 3 cut(s) 23, 129, 135
Cac8I GCNNGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 2 cut(s) 26, 88
CviJI RGCY 9 cut(s) 46, 72, 99, 163, 181, 191, 213, 279, 293
CviKI_1 RGCY 9 cut(s) 46, 72, 99, 163, 181, 191, 213, 279, 293
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 72
Eco88I CYCGRG 2 cut(s) 59, 274
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 29, 91
FaiI YATR 3 cut(s) 27, 89, 198
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 25, 87
FauI CCCGC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 33, 97
FokI GGATG 3 cut(s) 30, 116, 122
Fsp4HI GCNGC 2 cut(s) 33, 97
GluI GCNGC 2 cut(s) 33, 97
HaeIII GGCC 4 cut(s) 72, 99, 163, 191
Hin1II CATG 2 cut(s) 29, 91
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 61, 143, 229, 274
HpyAV CCTTC 2 cut(s) 121, 149
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 29, 91
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 2 cut(s) 86, 113
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 41
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 83, 86, 133, 139, 143, 152, 277
MseI TTAA 2 cut(s) 245, 266
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 29, 91
NmeAIII GCCGAG 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 34, 98
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 245, 266
SatI GCNGC 2 cut(s) 33, 97
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 101
SetI ASST 7 cut(s) 48, 105, 113, 215, 245, 260, 295
SfaNI GCATC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 185, 274
SmoI CTYRAG 2 cut(s) 185, 274
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 4 cut(s) 13, 96, 118, 169
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 114, 275
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 245, 266
Tru9I TTAA 2 cut(s) 245, 266
TseI GCWGC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.