Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

10041576 .. 10044258

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTACTCTGTTCATGAAGCTGGTGAGCTTCTTTCTAATTCTATCTACTTTTTGTCTCACTACTGTGAACTCGGAGCCACAGTGCCATAATTTCAAATCGATCATTAGTTTCGGCGATTCTATTGCCGACACTGGAAACTTGCTCGCCCTCTCCGATCCTACCAATCTCCCTAAGGTCGCGTTTCTACCGTACGGAGAAACCTTCTTCCACCATCCGACCGGCCGTTTCTCAAACGGCCGCCTCATCATCGATTTCATTGCTGAATTTTTGGGTTTTCCGCTTGTGCCTCCTTTTTACGGATCTCAAAATGCAAATTTTGAGAAAGGAGTTAATTTTGCGGTTGGAGGAGCAACGGCACTGGAACGTTCCTTTCTTGAAGAGAGAGGCATTCATTTTCCTTACACCAACGTTAGTTTAGCCGTACAGCTTAGTAGCTTCAAGGAGAGTTTGCCTAACTTATGTGTCTCTCCTTCAGACTGCAGAGATATGATAGAAAATTCTTTGATTCTCATGGGAGAAATTGGAGGGAATGACTATAACTACGCATTCTTTGTGGGCAAAAACATTGAAGAGATCAAAGAGCTGGTTCCGCTTGTTATTGAAACTATCTCTTCTGCAATCACGGAGTTGATTGGTATGGGGGGGAAAACATTTCTGGTGCCCGGAGAGTTCCCGCTCGGATGCTCAGTAGCCTATTTGAGTTTATATCAAACATCAAACATAGAAGAATATGATCCTCTAACAGGATGTTTGAAATGGCTGAACAAGTTTTCAGAATACCACGACGAGCAGCTTCAAGCAGAACTCAACAGACTTCAGAAGTTGTACCCTCATGTCAACATCATATACGCTGACTACTACAACACACTGTTGCGTCTTGCCCAAGAACCAGCCAAATTCGGGTTCATAAGCAGACCCTTGCCGGCTTGCTGCGCTTTAGGAGGACCGTTTAACTTCACATTAGGTAGGAAACGTGGGACTCAAGTACCTGAATGTTGTGACGATCCTTCAAAGTATGTGAGTTGGGATGGTGTTCATATGACTGAAGCTGCATATAGATTGATGGCTGAGGGTATACTTAAGGGACCTTATGCGATTCCTCCTTTCGATTGGTCTTGCCTCAGCTCTGAAATTAAGAACACACAGAATTCTTTGATGAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

389

Amino Acids

43.3

Weight (kDa)

5.03

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	99 - 288	6.8e-16	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	1078
AccII	CGCG	1 cut(s)	182
AciI	CCGC	5 cut(s)	241, 281, 341, 593, 677
AclI	AACGTT	2 cut(s)	367, 411
AclWI	GGATC	4 cut(s)	152, 310, 731, 1001
AcoI	YGGCCR	2 cut(s)	223, 238
AcsI	RAATTY	5 cut(s)	266, 316, 499, 899, 1150
AcuI	CTGAAG	3 cut(s)	459, 803, 1068
AfaI	GTAC	4 cut(s)	194, 426, 830, 990
AfiI	CCNNNNNNNGG	3 cut(s)	299, 746, 903
AflII	CTTAAG	1 cut(s)	1082
AgsI	TTSAA	8 cut(s)	97, 380, 442, 572, 605, 757, 800, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	890, 922
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	8 cut(s)	22, 30, 430, 438, 586, 796, 1052, 1128
AluI	AGCT	8 cut(s)	22, 30, 430, 438, 586, 796, 1052, 1128
Alw26I	GTCTC	2 cut(s)	62, 472
AlwI	GGATC	4 cut(s)	152, 310, 731, 1001
AoxI	GGCC	2 cut(s)	223, 238
ApeKI	GCWGC	3 cut(s)	793, 933, 1052
ApoI	RAATTY	5 cut(s)	266, 316, 499, 899, 1150
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	2 cut(s)	947, 1088
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	947, 1088
AxyI	CCTNAGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	666
BaeI	ACNNNNGTAYC	2 cut(s)	972, 1005
BanI	GGYRCC	1 cut(s)	661
BbvCI	CCTCAGC	2 cut(s)	1071, 1124
BbvI	GCAGC	3 cut(s)	805, 920, 1039
BccI	CCATC	3 cut(s)	222, 1025, 1060
BceAI	ACGGC	4 cut(s)	210, 253, 372, 407
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 242, 276
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	62, 472
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	1082
BisI	GCNGC	4 cut(s)	241, 794, 934, 1053
BlsI	GCNGC	4 cut(s)	242, 795, 935, 1054
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	2 cut(s)	947, 1088
BmgT120I	GGNCC	2 cut(s)	947, 1088
BmiI	GGNNCC	4 cut(s)	78, 591, 663, 1089
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	674
Bpu10I	CCTNAGC	2 cut(s)	1071, 1124
BpuEI	CTTGAG	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	666
Bsa29I	ATCGAT	2 cut(s)	101, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 746, 903
Bse118I	RCCGGY	2 cut(s)	221, 925
Bse1I	ACTGG	2 cut(s)	139, 366
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	258
BseCI	ATCGAT	2 cut(s)	101, 252
BseGI	GGATG	4 cut(s)	214, 689, 755, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	299, 746, 903
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	702, 1062, 1138
BseNI	ACTGG	2 cut(s)	139, 366
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	666
BseX3I	CGGCCG	2 cut(s)	223, 238
BseXI	GCAGC	3 cut(s)	805, 920, 1039
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	3 cut(s)	222, 226, 241
BshFI	GGCC	2 cut(s)	225, 240
BshNI	GGYRCC	1 cut(s)	661
BshVI	ATCGAT	2 cut(s)	101, 252
BsiEI	CGRYCG	3 cut(s)	222, 226, 241
BsiSI	CCGG	3 cut(s)	222, 666, 926
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	994, 1101
BslI	CCNNNNNNNGG	3 cut(s)	299, 746, 903
BsmAI	GTCTC	2 cut(s)	62, 472
BsmFI	GGGAC	2 cut(s)	994, 1101
BsmI	GAATGC	2 cut(s)	390, 548
BsnI	GGCC	2 cut(s)	225, 240
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
BspACI	CCGC	5 cut(s)	241, 281, 341, 593, 677
BspANI	GGCC	2 cut(s)	225, 240
BspCNI	CTCAG	3 cut(s)	701, 1063, 1137
BspDI	ATCGAT	2 cut(s)	101, 252
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	4 cut(s)	78, 591, 663, 1089
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	4 cut(s)	152, 310, 731, 1001
BspT107I	GGYRCC	1 cut(s)	661
BspTI	CTTAAG	1 cut(s)	1082
BsrBI	CCGCTC	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	221, 925
BsrI	ACTGG	2 cut(s)	139, 366
BssAI	RCCGGY	2 cut(s)	221, 925
BssMI	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
BssNAI	GTATAC	1 cut(s)	1079
Bst1107I	GTATAC	1 cut(s)	1079
Bst4CI	ACNGT	5 cut(s)	67, 84, 192, 873, 951
Bst6I	CTCTTC	3 cut(s)	375, 567, 619
BstAFI	CTTAAG	1 cut(s)	1082
BstC8I	GCNNGC	3 cut(s)	147, 927, 931
BstDEI	CTNAG	5 cut(s)	174, 431, 688, 1071, 1124
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstF5I	GGATG	4 cut(s)	214, 689, 755, 1036
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	6 cut(s)	105, 160, 305, 579, 739, 1009
BstMAI	GTCTC	2 cut(s)	62, 472
BstMBI	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
BstMCI	CGRYCG	3 cut(s)	222, 226, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	592, 935
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	805, 920, 1039
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BstZ17I	GTATAC	1 cut(s)	1079
BstZI	CGGCCG	2 cut(s)	223, 238
Bsu15I	ATCGAT	2 cut(s)	101, 252
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	225, 240
BsuTUI	ATCGAT	2 cut(s)	101, 252
BtsCI	GGATG	4 cut(s)	214, 689, 755, 1036
BtsIMutI	CAGTG	4 cut(s)	89, 132, 359, 869
Cac8I	GCNNGC	3 cut(s)	147, 927, 931
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	1 cut(s)	938
Cfr10I	RCCGGY	2 cut(s)	221, 925
Cfr13I	GGNCC	2 cut(s)	947, 1088
ClaI	ATCGAT	2 cut(s)	101, 252
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	4 cut(s)	193, 425, 829, 989
CviAII	CATG	3 cut(s)	16, 514, 836
CviQI	GTAC	4 cut(s)	193, 425, 829, 989
DdeI	CTNAG	5 cut(s)	174, 431, 688, 1071, 1124
DpnI	GATC	6 cut(s)	104, 159, 304, 578, 738, 1008
DpnII	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
EaeI	YGGCCR	2 cut(s)	223, 238
EagI	CGGCCG	2 cut(s)	223, 238
Eam1104I	CTCTTC	3 cut(s)	375, 567, 619
EarI	CTCTTC	3 cut(s)	375, 567, 619
EclXI	CGGCCG	2 cut(s)	223, 238
Eco47I	GGWCC	2 cut(s)	947, 1088
Eco52I	CGGCCG	2 cut(s)	223, 238
Eco57I	CTGAAG	3 cut(s)	459, 803, 1068
Eco81I	CCTNAGG	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoRI	GAATTC	1 cut(s)	1150
FaeI	CATG	3 cut(s)	19, 517, 839
FaqI	GGGAC	2 cut(s)	994, 1101
FatI	CATG	3 cut(s)	15, 513, 835
FauI	CCCGC	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	1041
FblI	GTMKAC	1 cut(s)	1078
Fnu4HI	GCNGC	4 cut(s)	241, 794, 934, 1053
FokI	GGATG	4 cut(s)	201, 696, 762, 1043
Fsp4HI	GCNGC	4 cut(s)	241, 794, 934, 1053
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	4 cut(s)	241, 794, 934, 1053
HaeIII	GGCC	2 cut(s)	225, 240
HapII	CCGG	3 cut(s)	222, 666, 926
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	1 cut(s)	938
Hin1II	CATG	3 cut(s)	19, 517, 839
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	4 cut(s)	119, 508, 982, 1099
HpaII	CCGG	3 cut(s)	222, 666, 926
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	70, 841, 1079
Hpy188I	TCNGA	8 cut(s)	76, 157, 219, 478, 683, 778, 822, 1132
Hpy188III	TCNNGA	2 cut(s)	16, 377
Hpy8I	GTNNAC	3 cut(s)	70, 841, 1079
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	3 cut(s)	214, 483, 1020
HpyCH4III	ACNGT	5 cut(s)	67, 84, 192, 873, 951
HpyCH4IV	ACGT	3 cut(s)	367, 411, 976
HpyCH4V	TGCA	4 cut(s)	314, 483, 620, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	592, 935
HpyF3I	CTNAG	5 cut(s)	174, 431, 688, 1071, 1124
HpySE526I	ACGT	3 cut(s)	367, 411, 976
Hsp92II	CATG	3 cut(s)	19, 517, 839
HspAI	GCGC	1 cut(s)	936
KroI	GCCGGC	1 cut(s)	925
KroNI	GCCGGC	1 cut(s)	927
Kzo9I	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
LmnI	GCTCC	2 cut(s)	76, 350
Lsp1109I	GCAGC	3 cut(s)	805, 920, 1039
LweI	GCATC	1 cut(s)	674
MaeII	ACGT	3 cut(s)	367, 411, 976
MaeIII	GTNAC	1 cut(s)	1001
MalI	GATC	6 cut(s)	104, 159, 304, 578, 738, 1008
MbiI	CCGCTC	1 cut(s)	679
MboI	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
MboII	GAAGA	5 cut(s)	199, 392, 584, 606, 740
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	2 cut(s)	242, 325
MroNI	GCCGGC	1 cut(s)	925
MseI	TTAA	4 cut(s)	333, 954, 1083, 1137
MslI	CAYNNNNRTG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	3 cut(s)	222, 666, 926
MspR9I	CCNGG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	390, 548
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	592, 935
NaeI	GCCGGC	1 cut(s)	927
NciI	CCSGG	1 cut(s)	666
NdeI	CATATG	1 cut(s)	1041
NdeII	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
NgoMIV	GCCGGC	1 cut(s)	925
NlaIII	CATG	3 cut(s)	19, 517, 839
NlaIV	GGNNCC	4 cut(s)	78, 591, 663, 1089
NmuCI	GTSAC	1 cut(s)	1001
OliI	CACNNNNGTG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	2 cut(s)	390, 548
PdiI	GCCGGC	1 cut(s)	927
PfeI	GAWTC	3 cut(s)	119, 508, 1099
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	242, 795, 935, 1054
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
PpuMI	RGGWCCY	1 cut(s)	1088
Psp1406I	AACGTT	2 cut(s)	367, 411
Psp5II	RGGWCCY	1 cut(s)	1088
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	78, 591, 663, 1089
PspPI	GGNCC	2 cut(s)	947, 1088
PspPPI	RGGWCCY	1 cut(s)	1088
PstI	CTGCAG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	4 cut(s)	194, 426, 830, 990
RsaNI	GTAC	4 cut(s)	193, 425, 829, 989
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	333, 954, 1083, 1137
SatI	GCNGC	4 cut(s)	241, 794, 934, 1053
Sau3AI	GATC	6 cut(s)	102, 157, 302, 576, 736, 1006
Sau96I	GGNCC	2 cut(s)	947, 1088
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	1 cut(s)	674
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	947, 1088
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	984, 1082
SmoI	CTYRAG	2 cut(s)	984, 1082
SsiI	CCGC	5 cut(s)	241, 281, 341, 593, 677
StyD4I	CCNGG	1 cut(s)	664
TaaI	ACNGT	5 cut(s)	67, 84, 192, 873, 951
TaiI	ACGT	3 cut(s)	370, 414, 979
TaqI	TCGA	3 cut(s)	101, 252, 1110
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	119, 508, 1099
Tru1I	TTAA	4 cut(s)	333, 954, 1083, 1137
Tru9I	TTAA	4 cut(s)	333, 954, 1083, 1137
TscAI	CASTG	4 cut(s)	89, 139, 366, 876
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	3 cut(s)	793, 933, 1052
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	6 cut(s)	4, 32, 247, 383, 898, 1028
TspGWI	ACGGA	3 cut(s)	210, 315, 641
TspRI	CASTG	4 cut(s)	89, 139, 366, 876
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	2 cut(s)	947, 1088
XagI	CCTNNNNNAGG	1 cut(s)	744
XapI	RAATTY	5 cut(s)	266, 316, 499, 899, 1150
XmiI	GTMKAC	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.