Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377757.1

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1073

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgggttcatcttcttcaccatatttgatcaacttcctcctcatattaccatcaatcatcatcccaaaagctcttggttgctacagtgcaatcttcagctttggtgattcgattactgatactggcaacttatatatcagctccaagaacagttctttccacttcttcttccctccatatggggagacctactttcatcgccccaccggacgatgctccgatggtcgcttgatcatagacttcattgctgagtatctgggacttccacatgttagaccttatcttgaactcaaaagcaatgcaagtgctcaaaacttcaaaggggcagtgaattttgcgatggtaggagccacggcgcttgatgcggcatttctagcagcaatgggagatcataatgattatacaaacagctctctaggaactcaactggattggtttaaagaaatgctgccttctttatgcaatacttcttcaaattgcaagaaacttctctccagctccctagttcttgtgggagagattggaggcaacgattacaacgatgcattgttggcagggaaaagtatagaacaggttcaaacatatgtaccattagtaatagaagaaatctctacaacaatcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

208

Amino Acids

22.64

Weight (kDa)

5.26

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	287, 319, 474, 578
AluBI	AGCT	5 cut(s)	71, 99, 141, 411, 498
AluI	AGCT	5 cut(s)	71, 99, 141, 411, 498
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	377, 448
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	9, 116
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	389, 435
BccI	CCATC	3 cut(s)	58, 215, 334
BceAI	ACGGC	1 cut(s)	369
BclI	TGATCA	2 cut(s)	27, 231
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	3 cut(s)	374, 416, 503
BfmI	CTRYAG	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	3 cut(s)	366, 378, 449
BlsI	GCNGC	3 cut(s)	367, 379, 450
BmiI	GGNNCC	1 cut(s)	349
BmsI	GCATC	3 cut(s)	203, 352, 532
BpmI	CTGGAG	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	127, 432
Bse3DI	GCAATG	3 cut(s)	243, 304, 387
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	3 cut(s)	243, 304, 387
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	127, 432
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	389, 435
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	273
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	27, 231, 388
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	3 cut(s)	243, 304, 387
BsrI	ACTGG	2 cut(s)	127, 432
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	27, 231, 388
Bst4CI	ACNGT	2 cut(s)	86, 152
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	30, 234, 391
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	27, 231, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	389, 435
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	182, 353
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	91, 333
CfoI	GCGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	587
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	6 cut(s)	71, 99, 141, 350, 411, 498
CviKI_1	RGCY	6 cut(s)	71, 99, 141, 350, 411, 498
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	29, 233, 390
DpnII	GATC	3 cut(s)	27, 231, 388
DraI	TTTAAA	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	1 cut(s)	272
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	1 cut(s)	268
FauNDI	CATATG	2 cut(s)	178, 583
FbaI	TGATCA	2 cut(s)	27, 231
Fnu4HI	GCNGC	3 cut(s)	366, 378, 449
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	366, 378, 449
FspBI	CTAG	3 cut(s)	374, 416, 503
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	366, 378, 449
GsuI	CTGGAG	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	9, 116
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	2 cut(s)	86, 152
HpyCH4V	TGCA	5 cut(s)	89, 302, 462, 480, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	2 cut(s)	27, 231
Kzo9I	GATC	3 cut(s)	27, 231, 388
LmnI	GCTCC	4 cut(s)	146, 221, 347, 503
LpnPI	CCDG	7 cut(s)	108, 220, 242, 413, 508, 540, 557
Lsp1109I	GCAGC	2 cut(s)	389, 435
LweI	GCATC	3 cut(s)	203, 352, 532
MaeI	CTAG	3 cut(s)	374, 416, 503
MalI	GATC	3 cut(s)	29, 233, 390
MboI	GATC	3 cut(s)	27, 231, 388
MboII	GAAGA	7 cut(s)	3, 6, 85, 157, 160, 462, 614
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	331, 475
MnlI	CCTC	4 cut(s)	47, 50, 183, 518
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	1 cut(s)	438
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
NdeI	CATATG	2 cut(s)	178, 583
NdeII	GATC	3 cut(s)	27, 231, 388
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	272
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	367, 379, 450
PscI	ACATGT	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	366, 378, 449
Sau3AI	GATC	3 cut(s)	27, 231, 388
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	73, 101, 143, 191, 280, 413, 500, 576
SfaNI	GCATC	3 cut(s)	203, 352, 532
SfcI	CTRYAG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	331, 475
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	3 cut(s)	374, 416, 503
TaaI	ACNGT	2 cut(s)	86, 152
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	331, 475
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	91, 333
TseI	GCWGC	2 cut(s)	377, 448
TspDTI	ATGAA	2 cut(s)	185, 232
TspRI	CASTG	2 cut(s)	91, 333
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	3 cut(s)	374, 416, 503
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.