Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

2813495 .. 2816119

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGTTCAATGGGGTGGTCTTTTCAGGCATATTGGATGAACCTCATCCTCATATCAGTTTTCATCATCCCGCATGTACTTGGTTGCTTCAATTCGGTCATCAGCTTTGGAGATTCACTTACGGATACAGGCAACTTATACAACAGCTCCCCTAACAGATCTCTCCACTACTTCCAACCGCCATATGGGGAGACCTACTTTCATCATCCCACGGGACGATGCTCGGATGGTCGTTTAATCATAGACTTCATTGCTCAGTTTCTGGGGCTTCCTCTAGTACCACCTTTTCTTCAAAACCTGAACAGTAATCAAAGTGTCCAAAACTTTGAAGCTGGTGTGAATTTTGCAGTAATAGGAGCCACGGGGCTCGATGCATCCTTTCTTGCAACAATGGAAATTCATAGTCCAAGTACCAACAACTCTCTAAGAATTCAACTGGAGTGGTTCAAACAAATGCTGCCATCTTTATGCAACACATCTTTAGACTGCAAGAAATTCCTTTCAACTTCTCTAATTCTAATGGGATCGATTGGATGCAACGATTACAACGATGGATTGCTTGGAGGAAAAAGTATAGAACTGGTTCGATCATATTTACCATTAGTGATAGAAGCAATTGCTTCAACCATCAATGAGTTAATCGAGCTCGGGGCAGCAACAATTTTGGTACCAGGCAACAATCCAATTGGTTGCCTTCCTGCTTATCTATCAAAATTTGAGACTTCAGATAAGAACCAATATGACCCTTCGACTGGCTGCCTAAAATGGTTAAACGAGTTTGCTCAGTACCACAATGAGCAGCTTCAGATCGAACTAAGTCGGATTCGAAGGCTTCATCCTCAGGTCACTATCGTTTATGCAGATTATTACAATGCCCTGCTGCAATTATATCAATCTCCACACCAGTTTGGATTTACTGGGGAGACTAGCAAAGCATGCTGTGGAGGAGGAGGGCCATACAACTTCAACCCATCCCTACAATGTGGGAATGCAGGGGCAACTGTTTGTGAGAACCCTTCACAGTTTATCAACTGGGATGGCATGCACTCTACTGAAGCAGCATACAGGTTGATGACCAAGGCTTTACTACAAGGAAATTACACCTTTCCACGCCTTGCCTCCTTGTGTGTTTCACAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

5.55

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	667
AciI	CCGC	2 cut(s)	71, 179
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	5 cut(s)	340, 396, 429, 494, 713
AcuI	CTGAAG	3 cut(s)	708, 788, 1074
AfaI	GTAC	5 cut(s)	78, 279, 412, 669, 788
AfiI	CCNNNNNNNGG	2 cut(s)	185, 752
AgsI	TTSAA	9 cut(s)	9, 91, 293, 329, 434, 448, 504, 624, 967
AjnI	CCWGG	1 cut(s)	670
AleI	CACNNNNGTG	1 cut(s)	1138
AluBI	AGCT	5 cut(s)	105, 147, 332, 646, 802
AluI	AGCT	5 cut(s)	105, 147, 332, 646, 802
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	3 cut(s)	185, 713, 917
AlwI	GGATC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	953
ApeKI	GCWGC	6 cut(s)	457, 653, 756, 799, 880, 1058
ApoI	RAATTY	5 cut(s)	340, 396, 429, 494, 713
Asp700I	GAANNNNTTC	1 cut(s)	582
Asp718I	GGTACC	1 cut(s)	667
AspS9I	GGNCC	1 cut(s)	953
AsuII	TTCGAA	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	647
AxyI	CCTNAGG	1 cut(s)	840
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	369, 648
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	6 cut(s)	444, 665, 743, 811, 867, 1070
BccI	CCATC	6 cut(s)	221, 469, 545, 635, 979, 1031
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	185, 713, 917
BfaI	CTAG	2 cut(s)	275, 927
BfuI	GTATCC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	6 cut(s)	458, 654, 757, 800, 881, 1059
BlsI	GCNGC	6 cut(s)	459, 655, 758, 801, 882, 1060
Bme1390I	CCNGG	1 cut(s)	672
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	2 cut(s)	358, 669
BmrFI	CCNGG	1 cut(s)	672
BmrI	ACTGGG	2 cut(s)	927, 1042
BmsI	GCATC	4 cut(s)	209, 361, 383, 524
BmuI	ACTGGG	2 cut(s)	927, 1042
BpmI	CTGGAG	1 cut(s)	458
Bpu14I	TTCGAA	1 cut(s)	826
Bsa29I	ATCGAT	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	210, 360, 1077
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 752
Bse1I	ACTGG	6 cut(s)	441, 585, 757, 904, 922, 1037
Bse21I	CCTNAGG	1 cut(s)	840
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	672
BseCI	ATCGAT	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	210, 360, 1077
BseLI	CCNNNNNNNGG	2 cut(s)	185, 752
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	269, 797, 854
BseNI	ACTGG	6 cut(s)	441, 585, 757, 904, 922, 1037
BseRI	GAGGAG	2 cut(s)	960, 963
BseXI	GCAGC	6 cut(s)	444, 665, 743, 811, 867, 1070
BshFI	GGCC	1 cut(s)	955
BshNI	GGYRCC	1 cut(s)	667
BshVI	ATCGAT	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	185, 752
BsmAI	GTCTC	3 cut(s)	185, 713, 917
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	1 cut(s)	955
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	2 cut(s)	369, 648
Bsp143I	GATC	4 cut(s)	158, 524, 587, 807
BspACI	CCGC	2 cut(s)	71, 179
BspANI	GGCC	1 cut(s)	955
BspCNI	CTCAG	3 cut(s)	268, 796, 853
BspDI	ATCGAT	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	358, 669
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	6 cut(s)	441, 585, 757, 904, 922, 1037
BssECI	CCNNGG	3 cut(s)	210, 360, 1077
BssMI	GATC	4 cut(s)	158, 524, 587, 807
BssT1I	CCWWGG	1 cut(s)	1077
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	305, 1003, 1023
BstAPI	GCANNNNNTGC	1 cut(s)	936
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	937, 1043
BstDEI	CTNAG	5 cut(s)	255, 425, 783, 815, 840
BstDSI	CCRYGG	2 cut(s)	210, 360
BstKTI	GATC	4 cut(s)	161, 527, 590, 810
BstMAI	GTCTC	3 cut(s)	185, 713, 917
BstMBI	GATC	4 cut(s)	158, 524, 587, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	936
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	3 cut(s)	77, 939, 1045
BstSCI	CCNGG	1 cut(s)	670
BstV1I	GCAGC	6 cut(s)	444, 665, 743, 811, 867, 1070
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	840
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	955
BsuTUI	ATCGAT	1 cut(s)	527
BtgI	CCRYGG	2 cut(s)	210, 360
Cac8I	GCNNGC	2 cut(s)	937, 1043
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	953
ClaI	ATCGAT	1 cut(s)	527
Csp6I	GTAC	5 cut(s)	77, 278, 411, 668, 787
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CviAII	CATG	3 cut(s)	74, 936, 1042
CviQI	GTAC	5 cut(s)	77, 278, 411, 668, 787
DdeI	CTNAG	5 cut(s)	255, 425, 783, 815, 840
DpnI	GATC	4 cut(s)	160, 526, 589, 809
DpnII	GATC	4 cut(s)	158, 524, 587, 807
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	1077
Eco24I	GRGCYC	2 cut(s)	369, 648
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	3 cut(s)	708, 788, 1074
Eco81I	CCTNAGG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	1077
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	369, 648
ErhI	CCWWGG	1 cut(s)	1077
FaeI	CATG	3 cut(s)	77, 939, 1045
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	73, 935, 1041
FauI	CCCGC	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	458, 654, 757, 800, 881, 1059
FriOI	GRGCYC	2 cut(s)	369, 648
Fsp4HI	GCNGC	6 cut(s)	458, 654, 757, 800, 881, 1059
FspBI	CTAG	2 cut(s)	275, 927
GluI	GCNGC	6 cut(s)	458, 654, 757, 800, 881, 1059
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	955
Hin1II	CATG	3 cut(s)	77, 939, 1045
HinfI	GANTC	2 cut(s)	113, 823
Hpy188I	TCNGA	4 cut(s)	226, 727, 807, 822
HpyAV	CCTTC	4 cut(s)	704, 756, 822, 1026
HpyCH4III	ACNGT	3 cut(s)	305, 1003, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	936
HpyF3I	CTNAG	5 cut(s)	255, 425, 783, 815, 840
Hsp92II	CATG	3 cut(s)	77, 939, 1045
KpnI	GGTACC	1 cut(s)	671
Kzo9I	GATC	4 cut(s)	158, 524, 587, 807
LmnI	GCTCC	2 cut(s)	152, 356
Lsp1109I	GCAGC	6 cut(s)	444, 665, 743, 811, 867, 1070
LweI	GCATC	4 cut(s)	209, 361, 383, 524
MaeI	CTAG	2 cut(s)	275, 927
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	4 cut(s)	160, 526, 589, 809
MboI	GATC	4 cut(s)	158, 524, 587, 807
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	2 cut(s)	615, 684
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	369, 648
MmeI	TCCRAC	2 cut(s)	199, 800
MnlI	CCTC	9 cut(s)	53, 59, 282, 557, 849, 938, 941, 944, 1129
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	3 cut(s)	236, 638, 770
MslI	CAYNNNNRTG	2 cut(s)	466, 1138
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	2 cut(s)	615, 684
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	1 cut(s)	936
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	4 cut(s)	158, 524, 587, 807
NlaIII	CATG	3 cut(s)	77, 939, 1045
NlaIV	GGNNCC	2 cut(s)	358, 669
NmuCI	GTSAC	1 cut(s)	844
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	3 cut(s)	77, 939, 1045
NspV	TTCGAA	1 cut(s)	826
OliI	CACNNNNGTG	1 cut(s)	1138
PaeI	GCATGC	2 cut(s)	939, 1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	113, 823
PkrI	GCNGC	6 cut(s)	459, 655, 758, 801, 882, 1060
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	358, 669
PspPI	GGNCC	1 cut(s)	953
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	5 cut(s)	78, 279, 412, 669, 788
RsaNI	GTAC	5 cut(s)	77, 278, 411, 668, 787
RseI	CAYNNNNRTG	2 cut(s)	466, 1138
SacI	GAGCTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	236, 638, 770
SatI	GCNGC	6 cut(s)	458, 654, 757, 800, 881, 1059
Sau3AI	GATC	4 cut(s)	158, 524, 587, 807
Sau96I	GGNCC	1 cut(s)	953
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	2 cut(s)	369, 648
SfaNI	GCATC	4 cut(s)	209, 361, 383, 524
SfuI	TTCGAA	1 cut(s)	826
SmiMI	CAYNNNNRTG	2 cut(s)	466, 1138
SphI	GCATGC	2 cut(s)	939, 1045
SsiI	CCGC	2 cut(s)	71, 179
SspMI	CTAG	2 cut(s)	275, 927
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	1077
TaaI	ACNGT	3 cut(s)	305, 1003, 1023
TaqI	TCGA	7 cut(s)	369, 527, 586, 642, 749, 810, 826
TaqII	GACCGA	1 cut(s)	85
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	113, 823
Tru1I	TTAA	3 cut(s)	236, 638, 770
Tru9I	TTAA	3 cut(s)	236, 638, 770
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	6 cut(s)	457, 653, 756, 799, 880, 1058
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	6 cut(s)	52, 53, 191, 238, 389, 824
TspGWI	ACGGA	1 cut(s)	137
XapI	RAATTY	5 cut(s)	340, 396, 429, 494, 713
XceI	RCATGY	3 cut(s)	77, 939, 1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	275, 927
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.