Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

28928363 .. 28930292

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTGGTATTTTCGGGCAAGTTTGACCATGAACGTCCTCCTACTCGTCGGAACAGTTGTGATCATCCCACATGCGCTTGGTTGCTACACTTCAATCATTGGCTTTGGGGATTCAACTGCTGATACAGGCAACTCATACCTCAATGCCCTTTACCACCATGACGAGCCTTTCCACTTCTTCTTCCCTCCATATGGGGAGGACTTCTTTCATCACCCCACCGGCCGCTGCTGCGACGGTCGTTTAATCATAGACTTCATTGCTGAATCTCTGGGACTTCCTCTTGTGCGACCTTATTTTGAAATCCTGAACGTCAATGAAACAGTGCGCAACTTTGAAGAGGGTGTGAATTTTGCAGTAGTAGGAGCCACTGCACTTGACACTGACTTTCTTGAACAAATGGGACATTATAATGAATTTACAAACTTCTCTCTAAGAATTCAAGTGGATTGGTTCAAAGGAATGTTATCACCTTTATGCAATACAGCTTCGGACTGCAGGGATCTCCTCTCAAGTTCTCTAGTTCTTATGGGACCGATTGGAGGCAACGATTACACCCATGCGTTGTTTGCAGGAGACAGTTTTCAAATTGTTCGAACATTTGTTCCAGTAGTGATGGAAGCAATGGCTTCAGCTATCAATGAGTTGATTGAGCATGGGGCATCAACACTTTTGGTACCAGGCAACTTTCCAATTGGTTGCCTCCCTACTTATCTTACATTCTATGAGGGTTCAGATGAGAGTGAATACGATCCTTCAACTGGTTGTCTTACTTGGTTAAACAAGTTTTCTGAGTATCACAATGAGCAGCTTCAGATAAAGCTAAGTCAGATTCGAAGCCTTCATCCTCATGCTAACATCATTTATGGAGATGTTTACAGTGCTACGTTACAACTGTATCAGTCTCCAAAACAATTTGGATTTACTTGGGAAGCAACCAAAGCATGCTGTGGAGGAGGGGGGACATACAATTACAACTCATCAGCACAATGTGGTGTTCCACCGGCAAGTGCTTGTCCAAACCCTGAAGAGGCTATCGACTGGGACGGTCTGCACTGTACTGAAGGAGCCAACCGGTGGATAGCCAAGGCTTTATTATATGGAAATTATACCATTCCCCGCCTTAGTAACTCCTGTGTGTCACAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

384

Amino Acids

42.42

Weight (kDa)

4.77

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
Acc16I	TGCGCA	1 cut(s)	329
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	676
AccB7I	CCANNNNNTGG	1 cut(s)	1077
AciI	CCGC	2 cut(s)	226, 1120
AclWI	GGATC	2 cut(s)	510, 746
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	3 cut(s)	349, 416, 438
AcuI	CTGAAG	4 cut(s)	615, 797, 1047, 1083
AdeI	CACNNNGTG	1 cut(s)	992
AfaI	GTAC	2 cut(s)	678, 1060
AfiI	CCNNNNNNNGG	5 cut(s)	194, 542, 761, 1030, 1077
AgeI	ACCGGT	1 cut(s)	1074
AgsI	TTSAA	9 cut(s)	96, 117, 302, 338, 395, 443, 457, 587, 759
AjnI	CCWGG	1 cut(s)	679
AleI	CACNNNNGTG	1 cut(s)	1147
AloI	GAACNNNNNNTCC	2 cut(s)	589, 621
AluBI	AGCT	4 cut(s)	488, 635, 811, 823
AluI	AGCT	4 cut(s)	488, 635, 811, 823
Alw26I	GTCTC	2 cut(s)	570, 909
AlwI	GGATC	2 cut(s)	510, 746
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	3 cut(s)	228, 231, 808
ApoI	RAATTY	3 cut(s)	349, 416, 438
AsiGI	ACCGGT	1 cut(s)	1074
Asp718I	GGTACC	1 cut(s)	676
AspLEI	GCGC	2 cut(s)	79, 330
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	206, 462
AsuII	TTCGAA	2 cut(s)	595, 835
AvaII	GGWCC	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	881, 914
BanI	GGYRCC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	215, 218, 820
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	570, 909
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	4 cut(s)	226, 229, 232, 809
BlsI	GCNGC	4 cut(s)	227, 230, 233, 810
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	4 cut(s)	367, 534, 678, 1069
BmrFI	CCNGG	1 cut(s)	681
BmrI	ACTGGG	1 cut(s)	1051
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	1051
Bpu14I	TTCGAA	2 cut(s)	595, 835
BpuEI	CTTGAG	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	1086
BsaWI	WCCGGW	1 cut(s)	1074
Bsc4I	CCNNNNNNNGG	5 cut(s)	194, 542, 761, 1030, 1077
Bse118I	RCCGGY	3 cut(s)	221, 1003, 1074
Bse1I	ACTGG	3 cut(s)	608, 766, 1046
Bse3DI	GCAATG	2 cut(s)	258, 630
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	66, 844
BseLI	CCNNNNNNNGG	5 cut(s)	194, 542, 761, 1030, 1077
BseMI	GCAATG	2 cut(s)	258, 630
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	3 cut(s)	608, 766, 1046
BseRI	GAGGAG	2 cut(s)	497, 969
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	215, 218, 820
BsgI	GTGCAG	2 cut(s)	357, 1037
Bsh1285I	CGRYCG	2 cut(s)	226, 241
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	676
BshTI	ACCGGT	1 cut(s)	1074
BsiEI	CGRYCG	2 cut(s)	226, 241
BsiSI	CCGG	3 cut(s)	222, 1004, 1075
BslFI	GGGAC	5 cut(s)	288, 417, 546, 976, 1058
BslI	CCNNNNNNNGG	5 cut(s)	194, 542, 761, 1030, 1077
BsmAI	GTCTC	2 cut(s)	570, 909
BsmFI	GGGAC	5 cut(s)	288, 417, 546, 976, 1058
BsnI	GGCC	1 cut(s)	225
Bsp119I	TTCGAA	2 cut(s)	595, 835
Bsp143I	GATC	3 cut(s)	63, 502, 751
BspACI	CCGC	2 cut(s)	226, 1120
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	784
BspLI	GGNNCC	4 cut(s)	367, 534, 678, 1069
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	2 cut(s)	510, 746
BspT104I	TTCGAA	2 cut(s)	595, 835
BspT107I	GGYRCC	1 cut(s)	676
BsrDI	GCAATG	2 cut(s)	258, 630
BsrFI	RCCGGY	3 cut(s)	221, 1003, 1074
BsrI	ACTGG	3 cut(s)	608, 766, 1046
BssAI	RCCGGY	3 cut(s)	221, 1003, 1074
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	3 cut(s)	63, 502, 751
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	9 cut(s)	58, 239, 325, 581, 881, 897, 1049, 1058, 1149
Bst6I	CTCTTC	2 cut(s)	333, 1023
BstBI	TTCGAA	2 cut(s)	595, 835
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	4 cut(s)	434, 792, 824, 1124
BstF5I	GGATG	2 cut(s)	66, 844
BstHHI	GCGC	2 cut(s)	79, 330
BstKTI	GATC	3 cut(s)	66, 505, 754
BstMAI	GTCTC	2 cut(s)	570, 909
BstMBI	GATC	3 cut(s)	63, 502, 751
BstMCI	CGRYCG	2 cut(s)	226, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 569, 941
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	2 cut(s)	77, 948
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	3 cut(s)	215, 218, 820
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	66, 844
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	5 cut(s)	330, 369, 381, 886, 1054
Cac8I	GCNNGC	1 cut(s)	946
CfoI	GCGC	2 cut(s)	79, 330
Cfr10I	RCCGGY	3 cut(s)	221, 1003, 1074
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	677, 1059
CspAI	ACCGGT	1 cut(s)	1074
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	7 cut(s)	31, 74, 161, 560, 656, 851, 945
CviQI	GTAC	2 cut(s)	677, 1059
DdeI	CTNAG	4 cut(s)	434, 792, 824, 1124
DpnI	GATC	3 cut(s)	65, 504, 753
DpnII	GATC	3 cut(s)	63, 502, 751
DraIII	CACNNNGTG	1 cut(s)	992
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	333, 1023
EarI	CTCTTC	2 cut(s)	333, 1023
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	533
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	4 cut(s)	615, 797, 1047, 1083
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	7 cut(s)	34, 77, 164, 563, 659, 854, 948
FaqI	GGGAC	5 cut(s)	288, 417, 546, 976, 1058
FatI	CATG	7 cut(s)	30, 73, 160, 559, 655, 850, 944
FauI	CCCGC	1 cut(s)	1127
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	226, 229, 232, 809
FokI	GGATG	2 cut(s)	53, 831
Fsp4HI	GCNGC	4 cut(s)	226, 229, 232, 809
FspBI	CTAG	1 cut(s)	521
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	2 cut(s)	78, 329
GluI	GCNGC	4 cut(s)	226, 229, 232, 809
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	222, 1004, 1075
HhaI	GCGC	2 cut(s)	79, 330
Hin1II	CATG	7 cut(s)	34, 77, 164, 563, 659, 854, 948
Hin6I	GCGC	2 cut(s)	77, 328
HinP1I	GCGC	2 cut(s)	77, 328
HinfI	GANTC	3 cut(s)	113, 266, 832
HpaII	CCGG	3 cut(s)	222, 1004, 1075
HphI	GGTGA	2 cut(s)	206, 462
Hpy166II	GTNNAC	1 cut(s)	877
Hpy188I	TCNGA	6 cut(s)	53, 493, 736, 793, 816, 831
Hpy188III	TCNNGA	2 cut(s)	307, 392
Hpy8I	GTNNAC	1 cut(s)	877
Hpy99I	CGWCG	2 cut(s)	53, 239
HpyAV	CCTTC	3 cut(s)	765, 851, 1058
HpyCH4III	ACNGT	9 cut(s)	58, 239, 325, 581, 881, 897, 1049, 1058, 1149
HpyCH4IV	ACGT	3 cut(s)	36, 312, 887
HpyCH4V	TGCA	6 cut(s)	356, 374, 480, 498, 572, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 569, 941
HpyF3I	CTNAG	4 cut(s)	434, 792, 824, 1124
HpySE526I	ACGT	3 cut(s)	36, 312, 887
Hsp92II	CATG	7 cut(s)	34, 77, 164, 563, 659, 854, 948
HspAI	GCGC	2 cut(s)	77, 328
KpnI	GGTACC	1 cut(s)	680
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 502, 751
LmnI	GCTCC	2 cut(s)	365, 1067
Lsp1109I	GCAGC	3 cut(s)	215, 218, 820
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	3 cut(s)	36, 312, 887
MaeIII	GTNAC	3 cut(s)	888, 1127, 1140
MalI	GATC	3 cut(s)	65, 504, 753
MboI	GATC	3 cut(s)	63, 502, 751
MboII	GAAGA	4 cut(s)	172, 175, 350, 1040
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	502
MluCI	AATT	8 cut(s)	349, 416, 438, 588, 693, 914, 970, 1105
MmeI	TCCRAC	1 cut(s)	31
MseI	TTAA	2 cut(s)	245, 779
MslI	CAYNNNNRTG	4 cut(s)	411, 475, 849, 1147
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	222, 1004, 1075
MspR9I	CCNGG	1 cut(s)	681
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	231, 569, 941
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	63, 502, 751
NlaIII	CATG	7 cut(s)	34, 77, 164, 563, 659, 854, 948
NlaIV	GGNNCC	4 cut(s)	367, 534, 678, 1069
NmuCI	GTSAC	1 cut(s)	1140
NsbI	TGCGCA	1 cut(s)	329
NspI	RCATGY	2 cut(s)	77, 948
NspV	TTCGAA	2 cut(s)	595, 835
OliI	CACNNNNGTG	1 cut(s)	1147
PaeI	GCATGC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	113, 266, 832
PflMI	CCANNNNNTGG	1 cut(s)	1077
PinAI	ACCGGT	1 cut(s)	1074
PkrI	GCNGC	4 cut(s)	227, 230, 233, 810
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	4 cut(s)	367, 534, 678, 1069
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	2 cut(s)	678, 1060
RsaNI	GTAC	2 cut(s)	677, 1059
RseI	CAYNNNNRTG	4 cut(s)	411, 475, 849, 1147
SaqAI	TTAA	2 cut(s)	245, 779
SatI	GCNGC	4 cut(s)	226, 229, 232, 809
Sau3AI	GATC	3 cut(s)	63, 502, 751
Sau96I	GGNCC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	681
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	2 cut(s)	595, 835
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	4 cut(s)	411, 475, 849, 1147
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SphI	GCATGC	1 cut(s)	948
Sse9I	AATT	8 cut(s)	349, 416, 438, 588, 693, 914, 970, 1105
SsiI	CCGC	2 cut(s)	226, 1120
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	9 cut(s)	58, 239, 325, 581, 881, 897, 1049, 1058, 1149
TaiI	ACGT	3 cut(s)	39, 315, 890
TaqI	TCGA	3 cut(s)	595, 835, 1038
TaqII	GACCGA	1 cut(s)	550
TasI	AATT	8 cut(s)	349, 416, 438, 588, 693, 914, 970, 1105
TatI	WGTACW	1 cut(s)	1058
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	113, 266, 832
Tru1I	TTAA	2 cut(s)	245, 779
Tru9I	TTAA	2 cut(s)	245, 779
TscAI	CASTG	5 cut(s)	330, 376, 388, 886, 1061
TseFI	GTSAC	1 cut(s)	1140
TseI	GCWGC	3 cut(s)	228, 231, 808
Tsp45I	GTSAC	1 cut(s)	1140
TspDTI	ATGAA	6 cut(s)	47, 200, 247, 333, 429, 833
TspRI	CASTG	5 cut(s)	330, 376, 388, 886, 1061
Van91I	CCANNNNNTGG	1 cut(s)	1077
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	3 cut(s)	349, 416, 438
XceI	RCATGY	2 cut(s)	77, 948
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.