Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

28901183 .. 28901464

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTGAACCTCTCAGTTTTCATAAATCATCGGATTCACGTCACTGCAGGATTTACTTGGGAAGCAACCAAAGCATGCTGTGGAGGAGGGGGGACATACAATTACAACTCATCAGCACAATGTGGTCTTCCAGGGGCAAGTGCTTGTGCAAACCCTGAAGAGTCTATCAACTGGGACGGTCTGCACTGTACTGAAGCAGCAAACCGGTGGATAACCAAGGCCTTATTATATGGAAATTATAGCATTCCCCACATTAGTACTTCCTGTGTGTCACAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

94

Amino Acids

9.97

Weight (kDa)

6.37

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	177, 213
AdeI	CACNNNGTG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	190, 259
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	197
AsiGI	ACCGGT	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	131, 216
BsaWI	WCCGGW	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	131, 216
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	221
BshTI	ACCGGT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	106, 188
BsmFI	GGGAC	2 cut(s)	106, 188
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	131, 216
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	179, 188, 279
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 184
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	189, 258
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
CviQI	GTAC	2 cut(s)	189, 258
DdeI	CTNAG	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	177, 213
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	78
FaiI	YATR	6 cut(s)	23, 76, 97, 229, 231, 240
FaqI	GGGAC	2 cut(s)	106, 188
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	2 cut(s)	34, 161
HpaII	CCGG	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	33
HpyCH4III	ACNGT	3 cut(s)	179, 188, 279
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	47, 149, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	78
LpnPI	CCDG	7 cut(s)	33, 117, 144, 157, 168, 218, 277
Lsp1109I	GCAGC	1 cut(s)	209
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	40, 270
MboII	GAAGA	2 cut(s)	119, 170
MluCI	AATT	2 cut(s)	100, 235
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	20, 77, 80
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	40, 270
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	190, 259
RsaNI	GTAC	2 cut(s)	189, 258
RseI	CAYNNNNRTG	1 cut(s)	277
SatI	GCNGC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	2 cut(s)	12, 42
SfcI	CTRYAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	2 cut(s)	100, 235
SseBI	AGGCCT	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	179, 188, 279
TaiI	ACGT	1 cut(s)	42
TasI	AATT	2 cut(s)	100, 235
TatI	WGTACW	2 cut(s)	188, 257
TfiI	GAWTC	1 cut(s)	34
TscAI	CASTG	2 cut(s)	49, 191
TseFI	GTSAC	2 cut(s)	40, 270
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	2 cut(s)	40, 270
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	49, 191
XceI	RCATGY	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.