Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

37368837 .. 37371053

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1283400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACGCTCCTCCTCCTGCTCATGATGTCAGCTGTTGCATTCATCCCTCAAGCTCTAGGTTGCTACAGCTCAATCATCAGCTTCGGCGATTCAATTGCCGATACGGGCAACTTGTACAACAGCTCTCCTAACAAATCTTTCAACTTTTTCTTCCCTCCATATGGAGAGACCTACTTTCACCGCCCCACCGGACGCTGCTCCGACGGTCGTTTAATCATAGACTTCATTGCTGAATATATGGGACTTCCACTAGTGCAACCTTACCTCGAACGCCATAACCAAACTGTCCACAACATTGACGGTGGTGTCAATTTTGCAGTGGTAGGATCCACTGCGCTGGACGCTGCTTTTCTTGAAGAAATGGGAGTTTATAATGAAATTACAAACAACTCTCTAAGAATTCAACTGGACTGGTTCCAAGAAATGCTGTCATCTTTATGCAACACATCTTCAGACTGCAACAAACTGCTTTCGAGCTCTCTAGTTCTTATGGGAGAGATCGGAGGCAACGATTACAACAACGCATTGCTTAGAGGAAAAAGTATAGAAAAGGTTGAGAAATATGTTCCATTGGTGATAGAAGCAATAGCTTCTTCAATCAATGAGTTGATTGCGTTTGGCGCCTCAACACTTGTTGTACCGGGAAACTTTCCAATCGGCTGCATTCCTGCTTATCTAACAACATATGAAACTTCGGATGAGAGTGAATACGACCCTTCAACTGGCTGTCTAAACTGGTTGAACAAGTTTTCCGAGTATCACAATGAGCTGCTCCAGAGAGAACTAAGTCGGATTCGAAGCCTTCATCCTCATGTCAATATCTTTTACGCAGATTACTACAATGCCATGCTGCAACTCTACCAGTCTCCAGACCAATTTGGATTTACTTGGGAAACTACCAAAGCATGCTGTGGAGGTGGGGGGCCATACAATTACAACTCATCAGCACTATGTGGCACTCCAGAGGCAAATGTACTTTGTGAAAACCCTGCACAGTTTATCAGCTGGGATGGTGTGCATTCAACTGAAGCAGCATACCGGTGGATAGCCAAGGGTTTATTAAACGGGAATTACACCGTTCCGCAAATTAGTACCTTGTGTGTTTCGCAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

372

Amino Acids

41.09

Weight (kDa)

4.65

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	25 - 352	1.1e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	620
AciI	CCGC	2 cut(s)	181, 1082
AclWI	GGATC	2 cut(s)	321, 334
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	435, 1047
AcyI	GRCGYC	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	4 cut(s)	116, 639, 975, 1093
AfiI	CCNNNNNNNGG	2 cut(s)	161, 722
AgeI	ACCGGT	1 cut(s)	1038
AgsI	TTSAA	8 cut(s)	93, 142, 356, 404, 597, 720, 742, 1023
AhlI	ACTAGT	1 cut(s)	250
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	9 cut(s)	32, 53, 69, 81, 123, 477, 590, 769, 1005
AluI	AGCT	9 cut(s)	32, 53, 69, 81, 123, 477, 590, 769, 1005
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	2 cut(s)	161, 870
AlwI	GGATC	2 cut(s)	321, 334
AoxI	GGCC	1 cut(s)	923
ApeKI	GCWGC	6 cut(s)	195, 344, 660, 769, 850, 1031
ApoI	RAATTY	1 cut(s)	399
AsiGI	ACCGGT	1 cut(s)	1038
AspLEI	GCGC	2 cut(s)	337, 623
AspS9I	GGNCC	1 cut(s)	923
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	170, 586
AsuII	TTCGAA	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	6 cut(s)	182, 331, 647, 756, 837, 1043
BccI	CCATC	1 cut(s)	1004
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	161, 870
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	3 cut(s)	56, 251, 482
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	624
BisI	GCNGC	6 cut(s)	196, 345, 661, 770, 851, 1032
BlsI	GCNGC	6 cut(s)	197, 346, 662, 771, 852, 1033
Bme1390I	CCNGG	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	4 cut(s)	328, 416, 622, 924
BmrFI	CCNGG	1 cut(s)	642
BpmI	CTGGAG	3 cut(s)	758, 852, 945
Bpu14I	TTCGAA	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	1050
BsaWI	WCCGGW	2 cut(s)	188, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 722
Bse118I	RCCGGY	1 cut(s)	1038
Bse1I	ACTGG	5 cut(s)	411, 416, 727, 740, 862
Bse3DI	GCAATG	2 cut(s)	225, 524
BseDI	CCNNGG	1 cut(s)	1050
BseGI	GGATG	4 cut(s)	42, 703, 805, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	161, 722
BseMI	GCAATG	2 cut(s)	225, 524
BseNI	ACTGG	5 cut(s)	411, 416, 727, 740, 862
BseXI	GCAGC	6 cut(s)	182, 331, 647, 756, 837, 1043
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	975
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	925
BshNI	GGYRCC	1 cut(s)	620
BshTI	ACCGGT	1 cut(s)	1038
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	189, 641, 1039
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	161, 722
BsmAI	GTCTC	2 cut(s)	161, 870
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	3 cut(s)	38, 663, 1018
BsnI	GGCC	1 cut(s)	925
Bso31I	GGTCTC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	326, 498
BspACI	CCGC	2 cut(s)	181, 1082
BspANI	GGCC	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	328, 416, 622, 924
BspPI	GGATC	2 cut(s)	321, 334
BspT104I	TTCGAA	1 cut(s)	796
BspT107I	GGYRCC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	225, 524
BsrFI	RCCGGY	1 cut(s)	1038
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	5 cut(s)	411, 416, 727, 740, 862
BssAI	RCCGGY	1 cut(s)	1038
BssECI	CCNNGG	1 cut(s)	1050
BssMI	GATC	2 cut(s)	326, 498
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	1050
Bst4CI	ACNGT	6 cut(s)	206, 286, 302, 996, 1078, 1113
BstACI	GRCGYC	1 cut(s)	621
BstAUI	TGTACA	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	907
BstDEI	CTNAG	3 cut(s)	395, 530, 785
BstF5I	GGATG	4 cut(s)	42, 703, 805, 1015
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	337, 623
BstKTI	GATC	2 cut(s)	329, 501
BstMAI	GTCTC	2 cut(s)	161, 870
BstMBI	GATC	2 cut(s)	326, 498
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 620
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	6 cut(s)	182, 331, 647, 756, 837, 1043
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	42, 703, 805, 1015
BtsI	GCAGTG	2 cut(s)	324, 330
BtsIMutI	CAGTG	2 cut(s)	324, 330
Cac8I	GCNNGC	1 cut(s)	907
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	2 cut(s)	337, 623
Cfr10I	RCCGGY	1 cut(s)	1038
Cfr13I	GGNCC	1 cut(s)	923
CseI	GACGC	3 cut(s)	13, 201, 350
Csp6I	GTAC	4 cut(s)	115, 638, 974, 1092
CspAI	ACCGGT	1 cut(s)	1038
CviAII	CATG	4 cut(s)	22, 812, 847, 906
CviQI	GTAC	4 cut(s)	115, 638, 974, 1092
DdeI	CTNAG	3 cut(s)	395, 530, 785
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	2 cut(s)	328, 500
DpnII	GATC	2 cut(s)	326, 498
DraIII	CACNNNGTG	1 cut(s)	953
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	1050
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	435, 1047
EcoICRI	GAGCTC	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	1050
EcoT38I	GRGCYC	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	1050
FaeI	CATG	4 cut(s)	25, 815, 850, 909
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	4 cut(s)	21, 811, 846, 905
FauNDI	CATATG	2 cut(s)	160, 685
Fnu4HI	GCNGC	6 cut(s)	196, 345, 661, 770, 851, 1032
FokI	GGATG	4 cut(s)	29, 710, 792, 1022
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	6 cut(s)	196, 345, 661, 770, 851, 1032
FspBI	CTAG	3 cut(s)	56, 251, 482
GlaI	GCGC	2 cut(s)	336, 622
GluI	GCNGC	6 cut(s)	196, 345, 661, 770, 851, 1032
GsaI	CCCAGC	1 cut(s)	1009
GsuI	CTGGAG	3 cut(s)	758, 852, 945
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	925
HapII	CCGG	3 cut(s)	189, 641, 1039
HgaI	GACGC	3 cut(s)	13, 201, 350
HhaI	GCGC	2 cut(s)	337, 623
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	25, 815, 850, 909
Hin6I	GCGC	2 cut(s)	335, 621
HinP1I	GCGC	2 cut(s)	335, 621
HinfI	GANTC	2 cut(s)	89, 793
HpaII	CCGG	3 cut(s)	189, 641, 1039
HphI	GGTGA	2 cut(s)	170, 586
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	6 cut(s)	202, 454, 503, 697, 754, 792
Hpy188III	TCNNGA	5 cut(s)	22, 353, 775, 869, 962
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	726, 812
HpyCH4III	ACNGT	6 cut(s)	206, 286, 302, 996, 1078, 1113
HpyCH4V	TGCA	9 cut(s)	38, 256, 317, 441, 459, 663, 853, 992, 1018
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 620
HpyF3I	CTNAG	3 cut(s)	395, 530, 785
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	25, 815, 850, 909
HspAI	GCGC	2 cut(s)	335, 621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	2 cut(s)	326, 498
LmnI	GCTCC	3 cut(s)	12, 203, 777
Lsp1109I	GCAGC	6 cut(s)	182, 331, 647, 756, 837, 1043
MaeI	CTAG	3 cut(s)	56, 251, 482
MalI	GATC	2 cut(s)	328, 500
MboI	GATC	2 cut(s)	326, 498
MboII	GAAGA	4 cut(s)	142, 368, 441, 585
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	8 cut(s)	93, 310, 378, 399, 875, 931, 1069, 1086
Mly113I	GGCGCC	1 cut(s)	621
MmeI	TCCRAC	2 cut(s)	225, 770
MseI	TTAA	2 cut(s)	212, 1061
MslI	CAYNNNNRTG	3 cut(s)	436, 810, 1039
MspA1I	CMGCKG	2 cut(s)	32, 1005
MspI	CCGG	3 cut(s)	189, 641, 1039
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	3 cut(s)	38, 663, 1018
MwoI	GCNNNNNNNGC	2 cut(s)	341, 620
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	642
NdeI	CATATG	2 cut(s)	160, 685
NdeII	GATC	2 cut(s)	326, 498
NlaIII	CATG	4 cut(s)	25, 815, 850, 909
NlaIV	GGNNCC	4 cut(s)	328, 416, 622, 924
NspI	RCATGY	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	796
PaeI	GCATGC	1 cut(s)	909
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	3 cut(s)	38, 663, 1018
PfeI	GAWTC	2 cut(s)	89, 793
PinAI	ACCGGT	1 cut(s)	1038
PkrI	GCNGC	6 cut(s)	197, 346, 662, 771, 852, 1033
PluTI	GGCGCC	1 cut(s)	624
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	1005
PspN4I	GGNNCC	4 cut(s)	328, 416, 622, 924
PspPI	GGNCC	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	32, 1005
RsaI	GTAC	4 cut(s)	116, 639, 975, 1093
RsaNI	GTAC	4 cut(s)	115, 638, 974, 1092
RseI	CAYNNNNRTG	3 cut(s)	436, 810, 1039
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	212, 1061
SatI	GCNGC	6 cut(s)	196, 345, 661, 770, 851, 1032
Sau3AI	GATC	2 cut(s)	326, 498
Sau96I	GGNCC	1 cut(s)	923
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	479
SfcI	CTRYAG	1 cut(s)	64
SfoI	GGCGCC	1 cut(s)	622
SfuI	TTCGAA	1 cut(s)	796
SmiMI	CAYNNNNRTG	3 cut(s)	436, 810, 1039
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	250
SphI	GCATGC	1 cut(s)	909
Sse9I	AATT	8 cut(s)	93, 310, 378, 399, 875, 931, 1069, 1086
SsiI	CCGC	2 cut(s)	181, 1082
SspDI	GGCGCC	1 cut(s)	620
SspMI	CTAG	3 cut(s)	56, 251, 482
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	6 cut(s)	206, 286, 302, 996, 1078, 1113
TaqI	TCGA	3 cut(s)	267, 473, 796
TasI	AATT	8 cut(s)	93, 310, 378, 399, 875, 931, 1069, 1086
TatI	WGTACW	2 cut(s)	114, 973
TfiI	GAWTC	2 cut(s)	89, 793
Tru1I	TTAA	2 cut(s)	212, 1061
Tru9I	TTAA	2 cut(s)	212, 1061
TscAI	CASTG	2 cut(s)	324, 337
TseI	GCWGC	6 cut(s)	195, 344, 660, 769, 850, 1031
TspDTI	ATGAA	5 cut(s)	31, 214, 390, 702, 794
TspRI	CASTG	2 cut(s)	324, 337
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	909
XspI	CTAG	3 cut(s)	56, 251, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.