Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

10069365 .. 10071108

Gene Structure 1744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGACGACGACTCTCCTCATGGCTTCGCTCATCGTAAGCTTTCTACTTATCTTATACTACACCACAATAGTCGTTGCCTCATCAGAATCTCGGTGTCGGCGTTACAAATCAATCATCAGCTTCGGTGATTCCATTGCGGACACCGGAAATTATGTTCATCTCTCCAACGTCAATAATCTTCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGCTTCTTCCATCCTCCCTCCGGCCGTTACTCGGACGGCCGTCTCGTTATAGATTTCATCGCCGAATTCTTGGGACTACCGTACGTTCCGCCTTACTTCGGATCCCAAAACGTGAGCTTCAATCAAGGGATAAATTTTGCTGTGTATGGAGCAACCGCCTTGGATCGTGCCTTTCTTGTAAAACAAGGAATTAAATCTGACTTCACCAATATTAGTCTAAGTGTTCAGCTTAACACCTTCAAGCAGATTTTACCTAACCTTTGTGCCTCATCTACTCGTGATTGCAGAGAGATGCTTGGAGACTCGCTGATACTCATGGGAGAGATTGGTGGAAACGACTATAATTACCCATTTTTTGAAGGAAAAAGTATCAATGAAATCAAAGAGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCTGCTATTGTGGATTTGATTGATTTGGGAGGAAAAACATTCCTGGTACCCGGAAACTTCCCAATAGGATGTTCCACGGCATATCTTACTCTATTTCAGACCGCGACAGTAGAACACGACCCTTTTACAGGTTGTATCCCATGGCTTAACAAATTCGGAGAGCACCATAACGAACAACTTAAGATAGAACTCAAACAACTCCAAAAACTCTACCCTCATGTCAACATCATTTACGCCGACTACTACAACTCTTTGTACGGACTTTTTCAAGAACCAGCCAAATATGGTTTTAAGAACAGACCTTTGGCTGCTTGTTGTGGAGTCGGAGGTCAATACAACTTCACTATTGGTAAAGAGTGTGGAGAAAACGGAGTTAGCTATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGTTATCATTTAACCGAAGCCACGTACCAGAAGATGGCTCAGGGTTTACTCAATGGTCGCTATACAACTCCTGCTTTCGACTGGTCCTGCCTTGGCTCTTATGATTTCAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

385

Amino Acids

42.84

Weight (kDa)

5.52

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 361	7.6e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccII	CGCG	1 cut(s)	731
AciI	CCGC	5 cut(s)	137, 189, 299, 366, 729
AclWI	GGATC	3 cut(s)	306, 319, 381
AcoI	YGGCCR	2 cut(s)	232, 247
AcsI	RAATTY	3 cut(s)	275, 343, 779
AfaI	GTAC	4 cut(s)	293, 675, 884, 1067
AfiI	CCNNNNNNNGG	5 cut(s)	230, 241, 308, 755, 1075
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	4 cut(s)	331, 451, 569, 896
AjnI	CCWGG	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	4 cut(s)	682, 714, 914, 946
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	8 cut(s)	39, 120, 213, 327, 439, 598, 620, 1005
AluI	AGCT	8 cut(s)	39, 120, 213, 327, 439, 598, 620, 1005
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	2 cut(s)	257, 504
AlwI	GGATC	3 cut(s)	306, 319, 381
AoxI	GGCC	2 cut(s)	232, 247
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	3 cut(s)	275, 343, 779
Asp718I	GGTACC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	1125
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	2 cut(s)	137, 406
AvaII	GGWCC	1 cut(s)	1125
BamHI	GGATCC	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	3 cut(s)	228, 1034, 1069
BceAI	ACGGC	5 cut(s)	219, 220, 234, 262, 720
BciT130I	CCWGG	1 cut(s)	671
BciVI	GTATCC	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	257, 504
BfrI	CTTAAG	1 cut(s)	806
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	2 cut(s)	189, 936
BlsI	GCNGC	2 cut(s)	190, 937
Bme1390I	CCNGG	2 cut(s)	671, 678
Bme18I	GGWCC	1 cut(s)	1125
BmgT120I	GGNCC	1 cut(s)	1125
BmiI	GGNNCC	2 cut(s)	313, 675
BmrFI	CCNGG	2 cut(s)	671, 678
BmsI	GCATC	1 cut(s)	492
BoxI	GACNNNNGTC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	1080
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	1065
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaJI	CCNNGG	4 cut(s)	369, 702, 767, 1132
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 241, 308, 755, 1075
Bse1I	ACTGG	1 cut(s)	1127
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	1044
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	4 cut(s)	369, 702, 767, 1132
BseGI	GGATG	3 cut(s)	220, 701, 1045
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	5 cut(s)	230, 241, 308, 755, 1075
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	1014, 1094
BseNI	ACTGG	1 cut(s)	1127
BseRI	GAGGAG	1 cut(s)	5
BseX3I	CGGCCG	2 cut(s)	232, 247
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	731
Bsh1285I	CGRYCG	2 cut(s)	235, 250
BshFI	GGCC	2 cut(s)	234, 249
BshNI	GGYRCC	1 cut(s)	673
BsiEI	CGRYCG	2 cut(s)	235, 250
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	3 cut(s)	144, 231, 678
BsiWI	CGTACG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	5 cut(s)	230, 241, 308, 755, 1075
BsmAI	GTCTC	2 cut(s)	257, 504
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	234, 249
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	2 cut(s)	311, 373
Bsp19I	CCATGG	1 cut(s)	767
BspACI	CCGC	5 cut(s)	137, 189, 299, 366, 729
BspANI	GGCC	2 cut(s)	234, 249
BspCNI	CTCAG	2 cut(s)	1015, 1093
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	2 cut(s)	313, 675
BspPI	GGATC	3 cut(s)	306, 319, 381
BspT107I	GGYRCC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	1127
BssECI	CCNNGG	4 cut(s)	369, 702, 767, 1132
BssMI	GATC	2 cut(s)	311, 373
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	3 cut(s)	369, 767, 1132
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	291, 736
BstAFI	CTTAAG	1 cut(s)	806
BstBAI	YACGTR	1 cut(s)	1065
BstDEI	CTNAG	3 cut(s)	428, 1023, 1080
BstDSI	CCRYGG	2 cut(s)	702, 767
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	220, 701, 1045
BstFNI	CGCG	1 cut(s)	731
BstKTI	GATC	2 cut(s)	314, 376
BstMAI	GTCTC	2 cut(s)	257, 504
BstMBI	GATC	2 cut(s)	311, 373
BstMCI	CGRYCG	2 cut(s)	235, 250
BstNI	CCWGG	1 cut(s)	671
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	669, 676
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BstZI	CGGCCG	2 cut(s)	232, 247
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	234, 249
BtgI	CCRYGG	2 cut(s)	702, 767
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	220, 701, 1045
BtsIMutI	CAGTG	1 cut(s)	1156
Cfr13I	GGNCC	1 cut(s)	1125
Csp6I	GTAC	4 cut(s)	292, 674, 883, 1066
CviAII	CATG	4 cut(s)	19, 526, 768, 845
CviQI	GTAC	4 cut(s)	292, 674, 883, 1066
DdeI	CTNAG	3 cut(s)	428, 1023, 1080
DpnI	GATC	2 cut(s)	313, 375
DpnII	GATC	2 cut(s)	311, 373
EaeI	YGGCCR	2 cut(s)	232, 247
EagI	CGGCCG	2 cut(s)	232, 247
EciI	GGCGGA	1 cut(s)	288
EclXI	CGGCCG	2 cut(s)	232, 247
Eco130I	CCWWGG	3 cut(s)	369, 767, 1132
Eco47I	GGWCC	1 cut(s)	1125
Eco52I	CGGCCG	2 cut(s)	232, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	3 cut(s)	369, 767, 1132
ErhI	CCWWGG	3 cut(s)	369, 767, 1132
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	22, 529, 771, 848
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	4 cut(s)	18, 525, 767, 844
Fnu4HI	GCNGC	2 cut(s)	189, 936
FokI	GGATG	3 cut(s)	207, 708, 1052
Fsp4HI	GCNGC	2 cut(s)	189, 936
GluI	GCNGC	2 cut(s)	189, 936
HaeIII	GGCC	2 cut(s)	234, 249
HapII	CCGG	3 cut(s)	144, 231, 678
Hin1II	CATG	4 cut(s)	22, 529, 771, 848
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	2 cut(s)	37, 211
HinfI	GANTC	5 cut(s)	10, 86, 128, 512, 948
HpaII	CCGG	3 cut(s)	144, 231, 678
HphI	GGTGA	2 cut(s)	137, 406
Hpy166II	GTNNAC	2 cut(s)	850, 1088
Hpy188I	TCNGA	8 cut(s)	85, 244, 311, 409, 726, 785, 953, 1024
Hpy188III	TCNNGA	2 cut(s)	488, 896
Hpy8I	GTNNAC	2 cut(s)	850, 1088
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	457, 563, 1029
HpyCH4III	ACNGT	2 cut(s)	291, 736
HpyCH4IV	ACGT	4 cut(s)	168, 294, 321, 1064
HpyCH4V	TGCA	1 cut(s)	495
HpyF3I	CTNAG	3 cut(s)	428, 1023, 1080
HpySE526I	ACGT	4 cut(s)	168, 294, 321, 1064
Hsp92II	CATG	4 cut(s)	22, 529, 771, 848
KpnI	GGTACC	1 cut(s)	677
Kzo9I	GATC	2 cut(s)	311, 373
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	1 cut(s)	492
MaeII	ACGT	4 cut(s)	168, 294, 321, 1064
MaeIII	GTNAC	2 cut(s)	101, 236
MalI	GATC	2 cut(s)	313, 375
MboI	GATC	2 cut(s)	311, 373
MboII	GAAGA	5 cut(s)	170, 188, 208, 618, 1084
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	7 cut(s)	148, 275, 343, 399, 553, 779, 1033
MlyI	GAGTC	3 cut(s)	4, 506, 957
MmeI	TCCRAC	2 cut(s)	189, 931
MseI	TTAA	6 cut(s)	402, 441, 774, 807, 918, 1052
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	3 cut(s)	144, 231, 678
MspR9I	CCNGG	2 cut(s)	671, 678
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	731
NciI	CCSGG	1 cut(s)	678
NcoI	CCATGG	1 cut(s)	767
NdeII	GATC	2 cut(s)	311, 373
NlaIII	CATG	4 cut(s)	22, 529, 771, 848
NlaIV	GGNNCC	2 cut(s)	313, 675
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 252
PfeI	GAWTC	2 cut(s)	86, 128
Pfl23II	CGTACG	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	2 cut(s)	190, 937
PleI	GAGTC	3 cut(s)	4, 506, 956
PpsI	GAGTC	3 cut(s)	4, 506, 956
Ppu21I	YACGTR	1 cut(s)	1065
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspLI	CGTACG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	313, 675
PspPI	GGNCC	1 cut(s)	1125
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	4 cut(s)	293, 675, 884, 1067
RsaNI	GTAC	4 cut(s)	292, 674, 883, 1066
SaqAI	TTAA	6 cut(s)	402, 441, 774, 807, 918, 1052
SatI	GCNGC	2 cut(s)	189, 936
Sau3AI	GATC	2 cut(s)	311, 373
Sau96I	GGNCC	1 cut(s)	1125
SchI	GAGTC	3 cut(s)	4, 506, 957
ScrFI	CCNGG	2 cut(s)	671, 678
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	492
SinI	GGWCC	1 cut(s)	1125
SmlI	CTYRAG	2 cut(s)	183, 806
SmoI	CTYRAG	2 cut(s)	183, 806
Sse9I	AATT	7 cut(s)	148, 275, 343, 399, 553, 779, 1033
SsiI	CCGC	5 cut(s)	137, 189, 299, 366, 729
SspI	AATATT	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	669, 676
StyI	CCWWGG	3 cut(s)	369, 767, 1132
TaaI	ACNGT	2 cut(s)	291, 736
TaiI	ACGT	4 cut(s)	171, 297, 324, 1067
TaqI	TCGA	1 cut(s)	1119
TasI	AATT	7 cut(s)	148, 275, 343, 399, 553, 779, 1033
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	86, 128
Tru1I	TTAA	6 cut(s)	402, 441, 774, 807, 918, 1052
Tru9I	TTAA	6 cut(s)	402, 441, 774, 807, 918, 1052
TscAI	CASTG	1 cut(s)	1156
TseI	GCWGC	1 cut(s)	935
TspDTI	ATGAA	3 cut(s)	146, 256, 600
TspGWI	ACGGA	2 cut(s)	900, 1011
TspRI	CASTG	1 cut(s)	1156
Van91I	CCANNNNNTGG	1 cut(s)	1075
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	1125
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	3 cut(s)	275, 343, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.