Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

11706028 .. 11708139

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGTCTCAAGATTGTCATATGTTATTGAGCTTCTTTATATCTACTTTTTTAATCACTGTCGTGACCTCGCAAACTCGATGCCGAAATTTCAAGTCGATCATCAGTTTCGGCGACTCGATTACTGATACTGGAAACTTACTCGGCCTCTCTAGTCCTAACGATCTTCCTGAGTCAGCCTTTCCGCCATACGGAGAAACCTTCTTCCACCATCCGTCTGGTCGTTTCTCCGATGGCCGCCTCATCATCGACTTCATTGCTGAATTCTTAGGGATTCCACATGTGCCTCCGTTTTATGGATCTAAAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTAGAATGTTCTGTTCTTGAGGAGAAAGGAACTCATTGTTCTCAAAGCAATATTAGTTTAGGAAACCAGCTTAAGAGCTTCAAAGAGAGTTTACCATATCTTTGTGGCTCCTCATCACCAGATTGTAGAGATATGATTGAAAATGCATTTATTCTCATTGGAGAAATTGGAGGGAATGATTACAACTTCCCATTATTTGATCGCAAGAACATTGAGGAAGTCAAAGAGCTGGTTCCCCTTGTGATCACTACTATTTCTTCGGCGATCTCGGAGTTGGTTGATATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTCCACTTGGATGCTCTGTAGCCTATTTGACGTTATACGAAACACCAAACAAAGAAGAATACAATCCTCTAACAGGATGTTTGACATGGCTGAACGACTTTTCAGTATACCACAACGAGCAGCTTCAAGCAGAACTCAAAAGACTTAGGAATCTTTACCCTCATGTCAACATCATATATGGTGACTACTACAATACTCTGTTGCGCCTTATGCAAGAACCATCCAAATTCGGGCTCATGGACAGACCTTTGCCCGCTTGTTGCGGGTTAGGAGGACCATACAACTTCACCTTTAGTATAAAATGTGGGAGTAAAGGAGTTGAATATTGTAGTGATCCTTCGAAGTATGTGAATTGGGACGGCATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCGTACTAACAGGGCCATATGCGATTCCTCCTTTCAATTGGTCATGCCTCGACTCTAAGATTAAGAACAATGAGTCATTACACACACAATATTCTTTGATGAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

394

Amino Acids

43.85

Weight (kDa)

5.16

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 358	2.7e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	5 cut(s)	185, 238, 338, 927, 936
AclWI	GGATC	2 cut(s)	307, 1001
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	4 cut(s)	88, 263, 670, 899
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	1080
AfiI	CCNNNNNNNGG	4 cut(s)	191, 296, 746, 903
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	6 cut(s)	94, 439, 497, 800, 995, 1111
AjnI	CCWGG	1 cut(s)	664
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	6 cut(s)	33, 427, 435, 586, 796, 1182
AluI	AGCT	6 cut(s)	33, 427, 435, 586, 796, 1182
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	307, 1001
AoxI	GGCC	3 cut(s)	145, 235, 1088
ApeKI	GCWGC	2 cut(s)	793, 1052
ApoI	RAATTY	4 cut(s)	88, 263, 670, 899
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	2 cut(s)	947, 1088
AsuHPI	GGTGA	3 cut(s)	465, 866, 952
AsuII	TTCGAA	1 cut(s)	1013
AvaII	GGWCC	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	909
BarI	GAAGNNNNNNTAC	2 cut(s)	994, 1026
BbvI	GCAGC	2 cut(s)	805, 1039
BccI	CCATC	3 cut(s)	219, 227, 901
BceAI	ACGGC	1 cut(s)	1048
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	3 cut(s)	153, 359, 659
BfmI	CTRYAG	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	3 cut(s)	238, 794, 1053
BlsI	GCNGC	3 cut(s)	239, 795, 1054
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	947
BmgT120I	GGNCC	2 cut(s)	947, 1088
BmiI	GGNNCC	2 cut(s)	466, 591
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	71, 674
Bpu14I	TTCGAA	1 cut(s)	1013
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	1071
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 296, 746, 903
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	1071
BseGI	GGATG	4 cut(s)	211, 689, 755, 893
BseLI	CCNNNNNNNGG	4 cut(s)	191, 296, 746, 903
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	162, 1038
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	3 cut(s)	360, 392, 457
BseXI	GCAGC	2 cut(s)	805, 1039
BshFI	GGCC	3 cut(s)	147, 237, 1090
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	4 cut(s)	191, 296, 746, 903
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	1043
BsmI	GAATGC	1 cut(s)	1035
BsnI	GGCC	3 cut(s)	147, 237, 1090
Bsp119I	TTCGAA	1 cut(s)	1013
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
BspACI	CCGC	5 cut(s)	185, 238, 338, 927, 936
BspANI	GGCC	3 cut(s)	147, 237, 1090
BspCNI	CTCAG	2 cut(s)	163, 1039
BspLI	GGNNCC	2 cut(s)	466, 591
BspPI	GGATC	2 cut(s)	307, 1001
BspT104I	TTCGAA	1 cut(s)	1013
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	1071
BssMI	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
BssNAI	GTATAC	1 cut(s)	781
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	781
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	1013
BstC8I	GCNNGC	1 cut(s)	927
BstDEI	CTNAG	5 cut(s)	171, 268, 818, 1047, 1131
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstF5I	GGATG	4 cut(s)	211, 689, 755, 893
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	7 cut(s)	102, 166, 302, 559, 603, 624, 1009
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	883
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	805, 1039
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	781
BsuRI	GGCC	3 cut(s)	147, 237, 1090
BtsCI	GGATG	4 cut(s)	211, 689, 755, 893
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	927
CfoI	GCGC	1 cut(s)	879
Cfr13I	GGNCC	2 cut(s)	947, 1088
Csp6I	GTAC	1 cut(s)	1079
CviAII	CATG	5 cut(s)	281, 759, 836, 910, 1119
CviQI	GTAC	1 cut(s)	1079
DdeI	CTNAG	5 cut(s)	171, 268, 818, 1047, 1131
DpnI	GATC	7 cut(s)	101, 165, 301, 558, 602, 623, 1008
DpnII	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
EaeI	YGGCCR	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	909
Eco32I	GATATC	1 cut(s)	1068
Eco47I	GGWCC	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	664
EcoRV	GATATC	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	909
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	284, 762, 839, 913, 1122
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	5 cut(s)	280, 758, 835, 909, 1118
FauI	CCCGC	2 cut(s)	929, 934
FauNDI	CATATG	3 cut(s)	21, 1041, 1093
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	238, 794, 1053
FokI	GGATG	4 cut(s)	198, 696, 762, 880
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	3 cut(s)	238, 794, 1053
FspBI	CTAG	3 cut(s)	153, 359, 659
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	3 cut(s)	238, 794, 1053
HaeIII	GGCC	3 cut(s)	147, 237, 1090
HhaI	GCGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	284, 762, 839, 913, 1122
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	7 cut(s)	116, 173, 274, 823, 1099, 1127, 1148
HphI	GGTGA	3 cut(s)	465, 866, 952
Hpy166II	GTNNAC	3 cut(s)	449, 781, 841
Hpy188I	TCNGA	3 cut(s)	232, 628, 1072
Hpy188III	TCNNGA	4 cut(s)	11, 64, 170, 374
Hpy8I	GTNNAC	3 cut(s)	449, 781, 841
HpyAV	CCTTC	2 cut(s)	211, 1020
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	3 cut(s)	503, 886, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	883
HpyF3I	CTNAG	5 cut(s)	171, 268, 818, 1047, 1131
HpySE526I	ACGT	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	284, 762, 839, 913, 1122
HspAI	GCGC	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
LmnI	GCTCC	3 cut(s)	347, 470, 644
Lsp1109I	GCAGC	2 cut(s)	805, 1039
LweI	GCATC	2 cut(s)	71, 674
MaeI	CTAG	3 cut(s)	153, 359, 659
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	2 cut(s)	64, 854
MalI	GATC	7 cut(s)	101, 165, 301, 558, 602, 623, 1008
MboI	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
MboII	GAAGA	4 cut(s)	158, 196, 606, 740
MfeI	CAATTG	1 cut(s)	1111
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	909
MluCI	AATT	8 cut(s)	88, 263, 331, 522, 670, 899, 1024, 1111
MlyI	GAGTC	4 cut(s)	110, 182, 1121, 1157
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	4 cut(s)	53, 330, 429, 1137
MslI	CAYNNNNRTG	5 cut(s)	62, 361, 682, 1040, 1060
MspA1I	CMGCKG	1 cut(s)	1182
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	1111
Mva1269I	GAATGC	1 cut(s)	1035
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	883
NdeI	CATATG	3 cut(s)	21, 1041, 1093
NdeII	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
NlaIII	CATG	5 cut(s)	284, 762, 839, 913, 1122
NlaIV	GGNNCC	2 cut(s)	466, 591
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	64, 854
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	1013
OliI	CACNNNNGTG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	1035
PfeI	GAWTC	3 cut(s)	274, 823, 1099
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	239, 795, 1054
PleI	GAGTC	4 cut(s)	110, 181, 1121, 1156
PpsI	GAGTC	4 cut(s)	110, 181, 1121, 1156
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	2 cut(s)	466, 591
PspPI	GGNCC	2 cut(s)	947, 1088
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	1182
RsaI	GTAC	1 cut(s)	1080
RsaNI	GTAC	1 cut(s)	1079
RseI	CAYNNNNRTG	5 cut(s)	62, 361, 682, 1040, 1060
SaqAI	TTAA	4 cut(s)	53, 330, 429, 1137
SatI	GCNGC	3 cut(s)	238, 794, 1053
Sau3AI	GATC	7 cut(s)	99, 163, 299, 556, 600, 621, 1006
Sau96I	GGNCC	2 cut(s)	947, 1088
SchI	GAGTC	4 cut(s)	110, 182, 1121, 1157
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	909
SfaNI	GCATC	2 cut(s)	71, 674
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	1013
SinI	GGWCC	1 cut(s)	947
SmiMI	CAYNNNNRTG	5 cut(s)	62, 361, 682, 1040, 1060
SmlI	CTYRAG	3 cut(s)	9, 374, 428
SmoI	CTYRAG	3 cut(s)	9, 374, 428
Sse9I	AATT	8 cut(s)	88, 263, 331, 522, 670, 899, 1024, 1111
SsiI	CCGC	5 cut(s)	185, 238, 338, 927, 936
SspI	AATATT	3 cut(s)	409, 998, 1166
SspMI	CTAG	3 cut(s)	153, 359, 659
StyD4I	CCNGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	6 cut(s)	79, 98, 119, 249, 1013, 1125
TasI	AATT	8 cut(s)	88, 263, 331, 522, 670, 899, 1024, 1111
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	274, 823, 1099
Tru1I	TTAA	4 cut(s)	53, 330, 429, 1137
Tru9I	TTAA	4 cut(s)	53, 330, 429, 1137
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	64, 854
TseI	GCWGC	2 cut(s)	793, 1052
Tsp45I	GTSAC	2 cut(s)	64, 854
TspDTI	ATGAA	2 cut(s)	244, 1028
TspGWI	ACGGA	3 cut(s)	204, 207, 279
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	947
XagI	CCTNNNNNAGG	1 cut(s)	744
XapI	RAATTY	4 cut(s)	88, 263, 670, 899
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	3 cut(s)	153, 359, 659
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.