Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

43629972 .. 43633131

Gene Structure 3160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1304000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGTTCATCTTTCCAACAATATTATTGGATGAACCTCCTCCTCTTATTAGTTTTCATACTCATCCCTCATGCCTCATGCTGCTTCAGTTCAATTTTCAGCTTTGGCGATTCGCTAGCTGATACCGGAAACTTAAAGATCAGCTCTCCTAACGAGACTGTCCACTTCTTCTTCCCTCCATATGGGATGACCTACTTTCATCGCCCCACCGGGCGCTGCTCCGACGGTCGCTTAGTCATAGACTTCATTGCTGAATATCTCGGACTTCCGCTTGTTCGACCTTATCTCGAAAGCCAGAAAAGTATCCAAAACTTTGAAGGGGGAGTGAATTTCGCCGTGGCAGGAGCCACGGCACTTGACGCCACCTTTCTTGAAGAAATGGGAGATTCTAATCCACGTACCAACAACTCTCTGGGAATTCAAATGGGCTGGTTTAAGGAAATTCTTCCATATTTTTGCAACATATCTTCAAATTGCAGTGAATTCCTTTCGGGCTCTCTAATTCTCATGGGAGAGATTGGGGGCAATGATTACAACGATGCCTTGCTTGGCGGGAAAAGTATAGAACAGGTTCAAGAATATGTGCCATTGGTGATAGAAGAAATTGGTTTATCCATCAATGAGTTAATCGAGCTTGGGGCCGCGACGCTTTTGGTACCTGGAAACCTTCCAATTGGTTGCCTTCCCATCTATCTTACAAACTATGAGGGTTCAGATGAGAGTGACTACGACCCTTCAACTGGTTGTTTAAATTGGTTAAACAAGTTTGTTGAGTATTACAATGAGCAGCTTCAGACAGAACTAAGCCGGATTCGAAGCCTTCATCCTCACGTCAACATCATTTATGCAGATTATTACAATGCTATGATGTACTTACATCATTCTCCAGAACAATTTGGATTTATCGGGGGAAGTCCAAAAGCGTGCTGCGGAGGAGGAGGGACATACAATTACAATTCATCAGCACAATGTGGTATGCGACAGGCAAGTGCTTGTGAAAATCCTGCAGAGTTTATCAGCTGGGACGGTATCCACTTTACTGAAGCAGCATACAAGTGGATAACAAATGCTTTGTTGAAAGGAAATTACACCGATCCTCGTATTAGTTCCTTGTGTGTTTCCACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

377

Amino Acids

41.66

Weight (kDa)

4.59

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 357	1.9e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	655
AccII	CGCG	1 cut(s)	644
AciI	CCGC	4 cut(s)	269, 552, 642, 930
AclWI	GGATC	1 cut(s)	1088
AcsI	RAATTY	4 cut(s)	328, 417, 441, 482
AcuI	CTGAAG	3 cut(s)	70, 776, 1062
AcyI	GRCGYC	1 cut(s)	360
AdeI	CACNNNGTG	2 cut(s)	971, 1128
AfaI	GTAC	3 cut(s)	400, 657, 872
AfiI	CCNNNNNNNGG	2 cut(s)	182, 740
AgsI	TTSAA	8 cut(s)	93, 317, 374, 422, 471, 575, 738, 1078
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	6 cut(s)	102, 119, 144, 634, 790, 1020
AluI	AGCT	6 cut(s)	102, 119, 144, 634, 790, 1020
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	1088
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	81, 216, 787, 927, 1046
ApoI	RAATTY	4 cut(s)	328, 417, 441, 482
Asp700I	GAANNNNTTC	2 cut(s)	444, 570
Asp718I	GGTACC	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	639
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	604
AsuII	TTCGAA	1 cut(s)	814
AsuNHI	GCTAGC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	497
BbvI	GCAGC	5 cut(s)	68, 203, 799, 914, 1058
BccI	CCATC	2 cut(s)	623, 695
BceAI	ACGGC	2 cut(s)	320, 366
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	2 cut(s)	314, 1040
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	1 cut(s)	217
BfuI	GTATCC	2 cut(s)	314, 1040
BisI	GCNGC	6 cut(s)	82, 217, 642, 788, 928, 1047
BlsI	GCNGC	6 cut(s)	83, 218, 643, 789, 929, 1048
Bme1390I	CCNGG	2 cut(s)	211, 660
BmgBI	CACGTC	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	3 cut(s)	346, 640, 657
BmrFI	CCNGG	2 cut(s)	211, 660
BmsI	GCATC	1 cut(s)	529
BmtI	GCTAGC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	814
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	336, 348
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 740
Bse1I	ACTGG	1 cut(s)	745
Bse3DI	GCAATG	2 cut(s)	246, 532
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	336, 348
BseGI	GGATG	4 cut(s)	36, 63, 192, 823
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	182, 740
BseMI	GCAATG	2 cut(s)	246, 532
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	4 cut(s)	29, 32, 948, 951
BseXI	GCAGC	5 cut(s)	68, 203, 799, 914, 1058
BseYI	CCCAGC	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	655
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	126, 210, 808
BslFI	GGGAC	2 cut(s)	955, 1037
BslI	CCNNNNNNNGG	2 cut(s)	182, 740
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	955, 1037
BsnI	GGCC	1 cut(s)	641
Bsp119I	TTCGAA	1 cut(s)	814
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	138, 1093
BspACI	CCGC	4 cut(s)	269, 552, 642, 930
BspANI	GGCC	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	3 cut(s)	346, 640, 657
BspMAI	CTGCAG	1 cut(s)	1009
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	1088
BspT104I	TTCGAA	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	2 cut(s)	246, 532
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	336, 348
BssMI	GATC	2 cut(s)	138, 1093
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	160, 227, 1028
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	2 cut(s)	117, 925
BstDEI	CTNAG	2 cut(s)	232, 803
BstDSI	CCRYGG	2 cut(s)	336, 348
BstF5I	GGATG	4 cut(s)	36, 63, 192, 823
BstFNI	CGCG	1 cut(s)	644
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	141, 1096
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	138, 1093
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	209, 658
BstSFI	CTRYAG	1 cut(s)	1005
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	5 cut(s)	68, 203, 799, 914, 1058
BsuI	GTATCC	2 cut(s)	314, 1040
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	2 cut(s)	336, 348
BtgZI	GCGATG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	4 cut(s)	36, 63, 192, 823
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	117, 925
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	639
CseI	GACGC	2 cut(s)	368, 655
Csp6I	GTAC	3 cut(s)	399, 656, 871
CspCI	CAANNNNNGTGG	4 cut(s)	337, 352, 372, 387
CviAII	CATG	3 cut(s)	71, 78, 508
CviQI	GTAC	3 cut(s)	399, 656, 871
DdeI	CTNAG	2 cut(s)	232, 803
DpnI	GATC	2 cut(s)	140, 1095
DpnII	GATC	2 cut(s)	138, 1093
DraI	TTTAAA	1 cut(s)	750
DraIII	CACNNNGTG	2 cut(s)	971, 1128
Eco24I	GRGCYC	1 cut(s)	497
Eco57I	CTGAAG	3 cut(s)	70, 776, 1062
EcoRI	GAATTC	2 cut(s)	417, 482
EcoRII	CCWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	497
FaeI	CATG	3 cut(s)	74, 81, 511
FaqI	GGGAC	2 cut(s)	955, 1037
FatI	CATG	3 cut(s)	70, 77, 507
FauI	CCCGC	1 cut(s)	545
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	6 cut(s)	82, 217, 642, 788, 928, 1047
FokI	GGATG	4 cut(s)	43, 50, 199, 810
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	6 cut(s)	82, 217, 642, 788, 928, 1047
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	6 cut(s)	82, 217, 642, 788, 928, 1047
GsaI	CCCAGC	1 cut(s)	1024
GsuI	CTGGAG	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	3 cut(s)	126, 210, 808
HgaI	GACGC	2 cut(s)	368, 655
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	74, 81, 511
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	3 cut(s)	110, 386, 811
HpaII	CCGG	3 cut(s)	126, 210, 808
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	163, 835
Hpy188I	TCNGA	4 cut(s)	223, 263, 715, 795
Hpy188III	TCNNGA	4 cut(s)	287, 371, 575, 887
Hpy8I	GTNNAC	2 cut(s)	163, 835
Hpy99I	CGWCG	2 cut(s)	227, 649
HpyAV	CCTTC	5 cut(s)	311, 677, 692, 744, 830
HpyCH4III	ACNGT	3 cut(s)	160, 227, 1028
HpyCH4IV	ACGT	2 cut(s)	397, 831
HpyCH4V	TGCA	4 cut(s)	459, 477, 848, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	232, 803
HpySE526I	ACGT	2 cut(s)	397, 831
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	74, 81, 511
HspAI	GCGC	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	659
Kzo9I	GATC	2 cut(s)	138, 1093
LmnI	GCTCC	2 cut(s)	224, 344
Lsp1109I	GCAGC	5 cut(s)	68, 203, 799, 914, 1058
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	397, 831
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	2 cut(s)	140, 1095
MboI	GATC	2 cut(s)	138, 1093
MboII	GAAGA	6 cut(s)	160, 163, 386, 437, 459, 611
MfeI	CAATTG	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	40, 246
MroXI	GAANNNNTTC	2 cut(s)	444, 570
MseI	TTAA	5 cut(s)	134, 435, 626, 749, 758
MslI	CAYNNNNRTG	1 cut(s)	1054
MspA1I	CMGCKG	1 cut(s)	1020
MspI	CCGG	3 cut(s)	126, 210, 808
MspR9I	CCNGG	2 cut(s)	211, 660
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	138, 1093
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	74, 81, 511
NlaIV	GGNNCC	3 cut(s)	346, 640, 657
NmuCI	GTSAC	1 cut(s)	722
NspV	TTCGAA	1 cut(s)	814
PdmI	GAANNNNTTC	2 cut(s)	444, 570
PfeI	GAWTC	3 cut(s)	110, 386, 811
PkrI	GCNGC	6 cut(s)	83, 218, 643, 789, 929, 1048
Ppu21I	YACGTR	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	3 cut(s)	346, 640, 657
PspPI	GGNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	1020
RsaI	GTAC	3 cut(s)	400, 657, 872
RsaNI	GTAC	3 cut(s)	399, 656, 871
RseI	CAYNNNNRTG	1 cut(s)	1054
SaqAI	TTAA	5 cut(s)	134, 435, 626, 749, 758
SatI	GCNGC	6 cut(s)	82, 217, 642, 788, 928, 1047
Sau3AI	GATC	2 cut(s)	138, 1093
Sau96I	GGNCC	1 cut(s)	639
ScrFI	CCNGG	2 cut(s)	211, 660
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	1005
SfuI	TTCGAA	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	1054
SsiI	CCGC	4 cut(s)	269, 552, 642, 930
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	209, 658
TaaI	ACNGT	3 cut(s)	160, 227, 1028
TaiI	ACGT	2 cut(s)	400, 834
TaqI	TCGA	4 cut(s)	277, 288, 630, 814
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	110, 386, 811
Tru1I	TTAA	5 cut(s)	134, 435, 626, 749, 758
Tru9I	TTAA	5 cut(s)	134, 435, 626, 749, 758
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	5 cut(s)	81, 216, 787, 927, 1046
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	6 cut(s)	46, 47, 188, 235, 812, 948
TspRI	CASTG	1 cut(s)	484
XapI	RAATTY	4 cut(s)	328, 417, 441, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmnI	GAANNNNTTC	2 cut(s)	444, 570
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.