Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

6939816 .. 6941911

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG088900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGTTCATCTTCTTCACCGTATTTGATCAACTTCCTCCTCATATTACCATTAATCATCATCCCAAAAGCTCTTGGGTGCTACAGTGCAATCTTCAGCTTTGGTGATTCGATTACTGATACTGGCAACTTATATATCAGCTCCAAGAACAGTTCTTTCCACTTCTTCTTCCCTCCATATGGGGAGACCTACTTTCATCGCCCCACCGGACGATGCTCCGATGGTCGCTTGATCATAGACTTCATTGCTGAGTATCTGGGACTTCCACATGTTAGACCTTATCTTGAACTCAAAAGCAATGCAAGTGCTCAAAACTTCAAAGGGGCAGTGAATTTTGCGATGGTAGGAGCCACGGCGCTTGATGCGGCATTTCTAGCAGCAATGGGAGATCATAATGATTATACAAACAGCTCTCTAGGAACTCAACTGGATTGGTTTAAAGAAATGCTGCCTTCTTTATGCAATACATCTTCAAATTGCAAGAAACTTCTCTCCAGTTCCCTAGTTCTTGTGGGAGAGATTGGAGGCAACGATTACAACGATGCATTGTTGGCAGGGAAAAGTATAGAACAGGAGTTAATTGAGCTTGGGGCAATGACACTCATGGTACCTGGCAACTTTCCAATCGGTTGCCTTCCCATTTATCTTACAAAATTTCGGACTTCAGATGAAAAGCAGTACGACTCCTCGACAGGTTGTCTGAATTGGTTAAACAAGTTTGCTGAATATCACAATGACCAGCTTCAAATAGAACTAAGTCAGGTTCAAAGGCTTCACCCCAATGTCAACATCATTTATGTAGATTATTACAATGCTGTGATGCATTTCTATCATTCTCCAGACCAATTCGGTACTTCAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

288

Amino Acids

31.99

Weight (kDa)

5.27

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	31 - 272	3.4e-19	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	607
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	331, 653
AcuI	CTGAAG	2 cut(s)	79, 648
AfaI	GTAC	3 cut(s)	609, 680, 853
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	287, 319, 474, 746, 767, 858
AhdI	GACNNNNNGTC	1 cut(s)	696
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	6 cut(s)	71, 99, 141, 411, 586, 742
AluI	AGCT	6 cut(s)	71, 99, 141, 411, 586, 742
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	377, 448
ApoI	RAATTY	2 cut(s)	331, 653
AseI	ATTAAT	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	9, 116, 767
BanI	GGYRCC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	389, 435
BccI	CCATC	2 cut(s)	215, 334
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	2 cut(s)	27, 231
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	3 cut(s)	374, 416, 503
BfmI	CTRYAG	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	3 cut(s)	366, 378, 449
BlsI	GCNGC	3 cut(s)	367, 379, 450
Bme1390I	CCNGG	1 cut(s)	612
BmeRI	GACNNNNNGTC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	349, 609
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	4 cut(s)	203, 352, 532, 810
BpmI	CTGGAG	2 cut(s)	478, 822
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	127, 432, 495
Bse3DI	GCAATG	4 cut(s)	243, 304, 387, 600
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	4 cut(s)	243, 304, 387, 600
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	127, 432, 495
BseRI	GAGGAG	2 cut(s)	29, 676
BseXI	GCAGC	2 cut(s)	389, 435
BshNI	GGYRCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	273
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	27, 231, 388
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	349, 609
BspT107I	GGYRCC	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	4 cut(s)	243, 304, 387, 600
BsrI	ACTGG	3 cut(s)	127, 432, 495
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	27, 231, 388
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	21, 86, 152
BstDEI	CTNAG	2 cut(s)	249, 755
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	30, 234, 391
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	27, 231, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	389, 435
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	182, 353
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	91, 333
CfoI	GCGC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	608, 679, 852
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	2 cut(s)	269, 604
CviJI	RGCY	8 cut(s)	71, 99, 141, 350, 411, 586, 742, 772
CviKI_1	RGCY	8 cut(s)	71, 99, 141, 350, 411, 586, 742, 772
CviQI	GTAC	3 cut(s)	608, 679, 852
DdeI	CTNAG	2 cut(s)	249, 755
DpnI	GATC	3 cut(s)	29, 233, 390
DpnII	GATC	3 cut(s)	27, 231, 388
DraI	TTTAAA	1 cut(s)	439
DriI	GACNNNNNGTC	1 cut(s)	696
Eam1105I	GACNNNNNGTC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	79, 648
EcoRII	CCWGG	1 cut(s)	610
EcoT22I	ATGCAT	2 cut(s)	547, 825
FaeI	CATG	2 cut(s)	272, 607
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	268, 603
FauNDI	CATATG	1 cut(s)	178
FbaI	TGATCA	2 cut(s)	27, 231
Fnu4HI	GCNGC	3 cut(s)	366, 378, 449
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	366, 378, 449
FspBI	CTAG	3 cut(s)	374, 416, 503
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	366, 378, 449
GsuI	CTGGAG	2 cut(s)	478, 822
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	272, 607
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	2 cut(s)	107, 683
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	9, 116, 767
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	5 cut(s)	220, 660, 667, 702, 866
Hpy188III	TCNNGA	2 cut(s)	284, 839
Hpy8I	GTNNAC	1 cut(s)	787
HpyAV	CCTTC	2 cut(s)	462, 644
HpyCH4III	ACNGT	3 cut(s)	21, 86, 152
HpyCH4V	TGCA	6 cut(s)	89, 302, 462, 480, 545, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
HpyF3I	CTNAG	2 cut(s)	249, 755
Hsp92II	CATG	2 cut(s)	272, 607
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	611
Ksp22I	TGATCA	2 cut(s)	27, 231
Kzo9I	GATC	3 cut(s)	27, 231, 388
LmnI	GCTCC	3 cut(s)	146, 221, 347
Lsp1109I	GCAGC	2 cut(s)	389, 435
LweI	GCATC	4 cut(s)	203, 352, 532, 810
MaeI	CTAG	3 cut(s)	374, 416, 503
MalI	GATC	3 cut(s)	29, 233, 390
MboI	GATC	3 cut(s)	27, 231, 388
MboII	GAAGA	6 cut(s)	3, 6, 85, 157, 160, 462
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	6 cut(s)	331, 475, 579, 653, 703, 845
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	5 cut(s)	47, 50, 183, 518, 697
Mph1103I	ATGCAT	2 cut(s)	547, 825
MseI	TTAA	4 cut(s)	53, 438, 578, 710
MslI	CAYNNNNRTG	1 cut(s)	780
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	3 cut(s)	27, 231, 388
NlaIII	CATG	2 cut(s)	272, 607
NlaIV	GGNNCC	2 cut(s)	349, 609
NsiI	ATGCAT	2 cut(s)	547, 825
NspI	RCATGY	1 cut(s)	272
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	367, 379, 450
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	349, 609
RsaI	GTAC	3 cut(s)	609, 680, 853
RsaNI	GTAC	3 cut(s)	608, 679, 852
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	4 cut(s)	53, 438, 578, 710
SatI	GCNGC	3 cut(s)	366, 378, 449
Sau3AI	GATC	3 cut(s)	27, 231, 388
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	4 cut(s)	203, 352, 532, 810
SfcI	CTRYAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	780
Sse9I	AATT	6 cut(s)	331, 475, 579, 653, 703, 845
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	3 cut(s)	374, 416, 503
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	21, 86, 152
TaqI	TCGA	2 cut(s)	110, 689
TasI	AATT	6 cut(s)	331, 475, 579, 653, 703, 845
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	53, 438, 578, 710
Tru9I	TTAA	4 cut(s)	53, 438, 578, 710
TscAI	CASTG	2 cut(s)	91, 333
TseI	GCWGC	2 cut(s)	377, 448
TspDTI	ATGAA	3 cut(s)	185, 232, 684
TspRI	CASTG	2 cut(s)	91, 333
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	2 cut(s)	331, 653
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	3 cut(s)	374, 416, 503
Zsp2I	ATGCAT	2 cut(s)	547, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.