Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

6643183 .. 6649537

Gene Structure 6355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTAGGAGCCACGGCGCTTGATGCGGCATTTCTAGCAGCAATGGGAGATCATAATGATTATACAAACAGCTCTCTAGGAACTCAACTGGATTGGTTTAAAGAAATGCTGCCTTCTTTATGCAATACTTCTTCAAATTGCAAGAAACTTCTCTCCAGCTCCGTAGTTCTTGTGGGAGAGATTGGAGGCAACGATTACAACGATGCATTGTTGGCAGGGAAAAGTATAGAACAGGTTCAAACATATGTACCATTAGTAATAGAAGAAATCTCTACAACAATCAAAGAGTTAATTGAGCTTGGGGCAATGACACTTATGGTGCCTGGCAACTTTCCAATCGGTTGCCTTCCCATTTATCTTACAAAATTTCGGACTTCAGATGAAAAGCAGTACGACTCCTCGACAGGTTGTCTGAATTGGTTAAACAAGTTTGCTGAATATCACAATGACCAGCTTCAAATAGAACTAAGTCAGGTTCAAAGGCTTCACCCCAATGTCAACATCATTTATGCAGATTATTACAATGCTGTGATGCATTTCTATCATTCTCCAGACCAATTCGGATTTATTGGGGGAACAGTCGAAGCATGCTGTGGAGGGGGAGGACCATACAATTACAACTCATCGGCACAATGTGGCTCTCTGGAGGCAAGTGCTTGTGAAAACCCTTCACAGTTTATCAACTGGGATGCTGAGGCATTTGAGTTGCCATTTTTACCACCCTACCTAACGCTGAAGAAAGGCCAAGATTTTTACCATGGAGTGAACTTTGCTGTTGCTTCACTAGACCCAGAATACTTCTACCAAAGAAAAATTGGATCCACTCTGTTGACAAACTACTCCTTGAGCACTCAGCTTGGTTGGTTCAAGAAGCTCAAGTCCTCACTCTGCAACAACAAGCAAGGTAACAACGTTCTGCATATCAGAAAACAAACCTACCTAATTCCATATTTATTTCACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

321

Amino Acids

35.77

Weight (kDa)

5.22

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	56 - 176	1.6e-09	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	912
AclWI	GGATC	2 cut(s)	813, 826
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	360, 755
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	249, 392
AgsI	TTSAA	5 cut(s)	135, 239, 458, 479, 868
AhdI	GACNNNNNGTC	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	6 cut(s)	72, 159, 298, 454, 856, 874
AluI	AGCT	6 cut(s)	72, 159, 298, 454, 856, 874
Alw21I	GWGCWC	1 cut(s)	851
AlwI	GGATC	2 cut(s)	813, 826
AoxI	GGCC	1 cut(s)	742
ApeKI	GCWGC	2 cut(s)	38, 109
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BamHI	GGATCC	1 cut(s)	818
BanI	GGYRCC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	50, 96
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	3 cut(s)	35, 77, 785
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	3 cut(s)	27, 39, 110
BlsI	GCNGC	3 cut(s)	28, 40, 111
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	3 cut(s)	10, 321, 820
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	4 cut(s)	13, 193, 522, 679
BmuI	ACTGGG	1 cut(s)	694
BpmI	CTGGAG	3 cut(s)	139, 534, 665
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	2 cut(s)	860, 865
BsaJI	CCNNGG	2 cut(s)	12, 757
Bse1I	ACTGG	2 cut(s)	93, 689
Bse3DI	GCAATG	2 cut(s)	48, 312
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	12, 757
BseGI	GGATG	1 cut(s)	694
BseMI	GCAATG	2 cut(s)	48, 312
BseMII	CTCAG	2 cut(s)	684, 866
BseNI	ACTGG	2 cut(s)	93, 689
BseRI	GAGGAG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	50, 96
BshFI	GGCC	1 cut(s)	744
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	851
BsnI	GGCC	1 cut(s)	744
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	2 cut(s)	49, 818
Bsp19I	CCATGG	1 cut(s)	757
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	744
BspCNI	CTCAG	2 cut(s)	685, 865
BspLI	GGNNCC	3 cut(s)	10, 321, 820
BspPI	GGATC	2 cut(s)	813, 826
BspT107I	GGYRCC	1 cut(s)	319
BsrDI	GCAATG	2 cut(s)	48, 312
BsrI	ACTGG	2 cut(s)	93, 689
BssECI	CCNNGG	2 cut(s)	12, 757
BssMI	GATC	2 cut(s)	49, 818
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	580, 675
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	3 cut(s)	467, 693, 852
BstDSI	CCRYGG	2 cut(s)	12, 757
BstF5I	GGATG	1 cut(s)	694
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	52, 821
BstMBI	GATC	2 cut(s)	49, 818
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 35, 212
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	50, 96
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	744
BtgI	CCRYGG	2 cut(s)	12, 757
BtsCI	GGATG	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	589
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	248, 391
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	2 cut(s)	588, 758
CviQI	GTAC	2 cut(s)	248, 391
DdeI	CTNAG	3 cut(s)	467, 693, 852
DpnI	GATC	2 cut(s)	51, 820
DpnII	GATC	2 cut(s)	49, 818
DraI	TTTAAA	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	635
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	360, 755
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	757
EcoT22I	ATGCAT	2 cut(s)	208, 537
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	2 cut(s)	591, 761
FatI	CATG	2 cut(s)	587, 757
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	27, 39, 110
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	3 cut(s)	27, 39, 110
FspBI	CTAG	3 cut(s)	35, 77, 785
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	27, 39, 110
GsuI	CTGGAG	3 cut(s)	139, 534, 665
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	744
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	591, 761
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	2 cut(s)	499, 831
HindII	GTYRAC	2 cut(s)	499, 831
HinfI	GANTC	1 cut(s)	395
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	3 cut(s)	499, 766, 831
Hpy188I	TCNGA	5 cut(s)	372, 379, 414, 563, 926
Hpy188III	TCNNGA	3 cut(s)	551, 644, 868
Hpy8I	GTNNAC	3 cut(s)	499, 766, 831
HpyAV	CCTTC	3 cut(s)	123, 356, 678
HpyCH4III	ACNGT	2 cut(s)	580, 675
HpyCH4IV	ACGT	2 cut(s)	912, 960
HpyCH4V	TGCA	7 cut(s)	123, 141, 206, 512, 535, 891, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 35, 212
HpyF3I	CTNAG	3 cut(s)	467, 693, 852
HpySE526I	ACGT	2 cut(s)	912, 960
Hsp92II	CATG	2 cut(s)	591, 761
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	49, 818
LmnI	GCTCC	2 cut(s)	8, 164
Lsp1109I	GCAGC	2 cut(s)	50, 96
LweI	GCATC	4 cut(s)	13, 193, 522, 679
MaeI	CTAG	3 cut(s)	35, 77, 785
MaeII	ACGT	2 cut(s)	912, 960
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	2 cut(s)	51, 820
MboI	GATC	2 cut(s)	49, 818
MboII	GAAGA	3 cut(s)	123, 275, 748
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	8 cut(s)	136, 291, 365, 415, 557, 613, 813, 942
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	179, 409, 590, 596, 640, 688, 892
Mph1103I	ATGCAT	2 cut(s)	208, 537
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	99, 290, 422
MslI	CAYNNNNRTG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	23, 35, 212
NcoI	CCATGG	1 cut(s)	757
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	49, 818
NlaIII	CATG	2 cut(s)	591, 761
NlaIV	GGNNCC	3 cut(s)	10, 321, 820
NsiI	ATGCAT	2 cut(s)	208, 537
NspI	RCATGY	1 cut(s)	591
PaeI	GCATGC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	28, 40, 111
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp1406I	AACGTT	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	10, 321, 820
PspPI	GGNCC	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	818
RsaI	GTAC	2 cut(s)	249, 392
RsaNI	GTAC	2 cut(s)	248, 391
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	99, 290, 422
SatI	GCNGC	3 cut(s)	27, 39, 110
Sau3AI	GATC	2 cut(s)	49, 818
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	4 cut(s)	13, 193, 522, 679
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	844, 875
SmoI	CTYRAG	2 cut(s)	844, 875
SphI	GCATGC	1 cut(s)	591
Sse9I	AATT	8 cut(s)	136, 291, 365, 415, 557, 613, 813, 942
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	3 cut(s)	35, 77, 785
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	2 cut(s)	580, 675
TaiI	ACGT	2 cut(s)	915, 963
TaqI	TCGA	2 cut(s)	401, 582
TasI	AATT	8 cut(s)	136, 291, 365, 415, 557, 613, 813, 942
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	99, 290, 422
Tru9I	TTAA	3 cut(s)	99, 290, 422
TseI	GCWGC	2 cut(s)	38, 109
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	35, 77, 785
Zsp2I	ATGCAT	2 cut(s)	208, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.