Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

28937922 .. 28939850

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTTGGTATATTCGGGCAAGTTTGACCATGAACGTCCTCCTCCTCGTCGGAACAGTTGTGATCATCCCACGTGCGCTTGGTTGCTACACTTCAATCATTGGCTTTGGGGATTCAATTGCTGATACAGGCAACTCATACCTCAACGCCCTTGACCACCATGACGAACCTTTCCACTTCTTCTTCCCTCCATATGGGGAGGAATTCTTTCATCACCCCACCGGCCGCTGCTGCGACGGTCGTTTAATCATAGACTTCATTGGCATGTGCAATACATCCACTTATCTATATCTCATACCATTAAAAACTGAATCTCTGGGACTTCCTCTTGTGCGACCTTATTTTGAAATCCTGAACGTCAATGAAACTGTGCGCAACTTTGAAGAGGGTGTGAATTTTGCAGTAGTAGGAGCCACTGCACTTGACACTGACTTTCTTGAACAAATGGGACATTATAATGAATTTACAAACTTCTCTCTAAGAATTCAATTGGATTGGTTCAAAGGAATGTTATCACCTTTATGCAATACAACTTCAGACTGCAGGGATCTCCTCTCAAGTTCTCTAGTTCTTATGGGACCGATTGGAGGCAACGATTACACCCATGCGTTGTTTGCAGGAGACAGTTTTCAAATTGTTCGAACATTTGTTCCAGTAGTGATAGAAGCAATGGCTTCAGCTATCAATGAGTTGATTGAGCATGGGGCATCAACACTTTTGGTACCAGGCAACTTTCCAATTGGTTGCCTCCCTGCTTATCTTACATTCTATGAGGGTTCAGATGAGAGTGAATATGATCCTTCAACTGGTTGTCTTACTTGGTTAAACAAGTTTTCTGAGTATCACAATGAGCAGCTTCAGATAAAGCTAAGTCAGATTCGAAGCCTTCATCCTCATGCTAACATAATTTATGGAGATGTTTACAGTGCTACGTTACAACTGTATCAGTCTCCAAAACAATTTGGATTTACTTGGGAAGCAACCAAAGCATGCTGTGGAGGAGGGGGGACATACAATTACAACTCATCAGCACAATGTGGTCTTCCAGGGGCAAGTGCTTGTGCAAACCCTGAAGAGTCTATCAACTGGGACGGTCTGCACTGTACTGAAGCAGCAAACCGGTGGATAACCAAGGCCTTATTATATGGAAATTATAGCATTCCCCACATTAGTACTTCCTGTGTGTCACAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

399

Amino Acids

44.07

Weight (kDa)

4.83

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
Acc16I	TGCGCA	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	721
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	2 cut(s)	555, 791
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	4 cut(s)	203, 394, 461, 483
AcuI	CTGAAG	5 cut(s)	519, 660, 842, 1092, 1128
AcvI	CACGTG	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	1037
AfaI	GTAC	3 cut(s)	723, 1105, 1174
AfiI	CCNNNNNNNGG	3 cut(s)	194, 587, 806
AgeI	ACCGGT	1 cut(s)	1119
AgsI	TTSAA	9 cut(s)	96, 117, 347, 383, 440, 488, 502, 632, 804
AjnI	CCWGG	2 cut(s)	724, 1045
AleI	CACNNNNGTG	1 cut(s)	1192
AloI	GAACNNNNNNTCC	2 cut(s)	634, 666
AluBI	AGCT	3 cut(s)	680, 856, 868
AluI	AGCT	3 cut(s)	680, 856, 868
Alw26I	GTCTC	2 cut(s)	615, 954
AlwI	GGATC	2 cut(s)	555, 791
AoxI	GGCC	2 cut(s)	223, 1134
ApeKI	GCWGC	4 cut(s)	228, 231, 853, 1112
ApoI	RAATTY	4 cut(s)	203, 394, 461, 483
AsiGI	ACCGGT	1 cut(s)	1119
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	721
AspLEI	GCGC	2 cut(s)	79, 375
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	206, 507
AsuII	TTCGAA	2 cut(s)	640, 880
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	926, 959
BanI	GGYRCC	1 cut(s)	721
BbrPI	CACGTG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	1034
BbvI	GCAGC	4 cut(s)	215, 218, 865, 1124
BciT130I	CCWGG	2 cut(s)	726, 1047
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	615, 954
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	541
BisI	GCNGC	5 cut(s)	226, 229, 232, 854, 1113
BlsI	GCNGC	5 cut(s)	227, 230, 233, 855, 1114
BmcAI	AGTACT	1 cut(s)	1174
Bme1390I	CCNGG	2 cut(s)	726, 1047
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	412, 579, 723
BmrFI	CCNGG	2 cut(s)	726, 1047
BmrI	ACTGGG	1 cut(s)	1096
BmsI	GCATC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	1096
BpiI	GAAGAC	1 cut(s)	1034
Bpu14I	TTCGAA	2 cut(s)	640, 880
BpuEI	CTTGAG	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	1046, 1131
BsaWI	WCCGGW	1 cut(s)	1119
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 587, 806
Bse118I	RCCGGY	2 cut(s)	221, 1119
Bse1I	ACTGG	3 cut(s)	653, 811, 1091
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	2 cut(s)	726, 1047
BseDI	CCNNGG	2 cut(s)	1046, 1131
BseGI	GGATG	3 cut(s)	66, 275, 889
BseLI	CCNNNNNNNGG	3 cut(s)	194, 587, 806
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	3 cut(s)	653, 811, 1091
BseRI	GAGGAG	4 cut(s)	32, 35, 542, 1014
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	215, 218, 865, 1124
BsgI	GTGCAG	2 cut(s)	402, 1082
Bsh1285I	CGRYCG	2 cut(s)	226, 241
BshFI	GGCC	2 cut(s)	225, 1136
BshNI	GGYRCC	1 cut(s)	721
BshTI	ACCGGT	1 cut(s)	1119
BsiEI	CGRYCG	2 cut(s)	226, 241
BsiSI	CCGG	2 cut(s)	222, 1120
BslFI	GGGAC	5 cut(s)	333, 462, 591, 1021, 1103
BslI	CCNNNNNNNGG	3 cut(s)	194, 587, 806
BsmAI	GTCTC	2 cut(s)	615, 954
BsmFI	GGGAC	5 cut(s)	333, 462, 591, 1021, 1103
BsmI	GAATGC	1 cut(s)	1158
BsnI	GGCC	2 cut(s)	225, 1136
Bsp119I	TTCGAA	2 cut(s)	640, 880
Bsp143I	GATC	3 cut(s)	63, 547, 796
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	225, 1136
BspCNI	CTCAG	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	412, 579, 723
BspMAI	CTGCAG	1 cut(s)	545
BspPI	GGATC	2 cut(s)	555, 791
BspT104I	TTCGAA	2 cut(s)	640, 880
BspT107I	GGYRCC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	2 cut(s)	221, 1119
BsrI	ACTGG	3 cut(s)	653, 811, 1091
BssAI	RCCGGY	2 cut(s)	221, 1119
BssECI	CCNNGG	2 cut(s)	1046, 1131
BssMI	GATC	3 cut(s)	63, 547, 796
BssT1I	CCWWGG	1 cut(s)	1131
Bst2UI	CCWGG	2 cut(s)	726, 1047
Bst4CI	ACNGT	9 cut(s)	58, 239, 370, 626, 926, 942, 1094, 1103, 1194
Bst6I	CTCTTC	2 cut(s)	378, 1068
BstBAI	YACGTR	1 cut(s)	74
BstBI	TTCGAA	2 cut(s)	640, 880
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	3 cut(s)	479, 837, 869
BstF5I	GGATG	3 cut(s)	66, 275, 889
BstHHI	GCGC	2 cut(s)	79, 375
BstKTI	GATC	3 cut(s)	66, 550, 799
BstMAI	GTCTC	2 cut(s)	615, 954
BstMBI	GATC	3 cut(s)	63, 547, 796
BstMCI	CGRYCG	2 cut(s)	226, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 614, 986
BstNI	CCWGG	2 cut(s)	726, 1047
BstNSI	RCATGY	2 cut(s)	268, 993
BstSCI	CCNGG	2 cut(s)	724, 1045
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	215, 218, 865, 1124
BstV2I	GAAGAC	1 cut(s)	1034
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	225, 1136
BtsCI	GGATG	3 cut(s)	66, 275, 889
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	4 cut(s)	414, 426, 931, 1099
Cac8I	GCNNGC	1 cut(s)	991
CfoI	GCGC	2 cut(s)	79, 375
Cfr10I	RCCGGY	2 cut(s)	221, 1119
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	722, 1104, 1173
CspAI	ACCGGT	1 cut(s)	1119
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	7 cut(s)	31, 161, 265, 605, 701, 896, 990
CviQI	GTAC	3 cut(s)	722, 1104, 1173
DdeI	CTNAG	3 cut(s)	479, 837, 869
DpnI	GATC	3 cut(s)	65, 549, 798
DpnII	GATC	3 cut(s)	63, 547, 796
DraIII	CACNNNGTG	1 cut(s)	1037
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	378, 1068
EarI	CTCTTC	2 cut(s)	378, 1068
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	1131
Eco147I	AGGCCT	1 cut(s)	1136
Eco47I	GGWCC	1 cut(s)	578
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	5 cut(s)	519, 660, 842, 1092, 1128
Eco72I	CACGTG	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	203, 483
EcoRII	CCWGG	2 cut(s)	724, 1045
EcoT14I	CCWWGG	1 cut(s)	1131
ErhI	CCWWGG	1 cut(s)	1131
FaeI	CATG	7 cut(s)	34, 164, 268, 608, 704, 899, 993
FaqI	GGGAC	5 cut(s)	333, 462, 591, 1021, 1103
FatI	CATG	7 cut(s)	30, 160, 264, 604, 700, 895, 989
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	226, 229, 232, 854, 1113
FokI	GGATG	3 cut(s)	53, 262, 876
Fsp4HI	GCNGC	5 cut(s)	226, 229, 232, 854, 1113
FspBI	CTAG	1 cut(s)	566
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	2 cut(s)	78, 374
GluI	GCNGC	5 cut(s)	226, 229, 232, 854, 1113
HaeIII	GGCC	2 cut(s)	225, 1136
HapII	CCGG	2 cut(s)	222, 1120
HhaI	GCGC	2 cut(s)	79, 375
Hin1II	CATG	7 cut(s)	34, 164, 268, 608, 704, 899, 993
Hin6I	GCGC	2 cut(s)	77, 373
HinP1I	GCGC	2 cut(s)	77, 373
HinfI	GANTC	4 cut(s)	113, 311, 877, 1076
HpaII	CCGG	2 cut(s)	222, 1120
HphI	GGTGA	2 cut(s)	206, 507
Hpy166II	GTNNAC	1 cut(s)	922
Hpy188I	TCNGA	6 cut(s)	53, 538, 781, 838, 861, 876
Hpy188III	TCNNGA	2 cut(s)	352, 437
Hpy8I	GTNNAC	1 cut(s)	922
Hpy99I	CGWCG	2 cut(s)	53, 239
HpyAV	CCTTC	2 cut(s)	810, 896
HpyCH4III	ACNGT	9 cut(s)	58, 239, 370, 626, 926, 942, 1094, 1103, 1194
HpyCH4IV	ACGT	4 cut(s)	36, 73, 357, 932
HpyCH4V	TGCA	8 cut(s)	270, 401, 419, 525, 543, 617, 1064, 1099
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 614, 986
HpyF3I	CTNAG	3 cut(s)	479, 837, 869
HpySE526I	ACGT	4 cut(s)	36, 73, 357, 932
Hsp92II	CATG	7 cut(s)	34, 164, 268, 608, 704, 899, 993
HspAI	GCGC	2 cut(s)	77, 373
KpnI	GGTACC	1 cut(s)	725
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 547, 796
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	4 cut(s)	215, 218, 865, 1124
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	4 cut(s)	36, 73, 357, 932
MaeIII	GTNAC	2 cut(s)	933, 1185
MalI	GATC	3 cut(s)	65, 549, 798
MboI	GATC	3 cut(s)	63, 547, 796
MboII	GAAGA	5 cut(s)	172, 175, 395, 1034, 1085
MfeI	CAATTG	3 cut(s)	117, 488, 738
MflI	RGATCY	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	1085
MmeI	TCCRAC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	3 cut(s)	245, 302, 824
MslI	CAYNNNNRTG	5 cut(s)	263, 456, 520, 894, 1192
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	222, 1120
MspR9I	CCNGG	2 cut(s)	726, 1047
MunI	CAATTG	3 cut(s)	117, 488, 738
Mva1269I	GAATGC	1 cut(s)	1158
MvaI	CCWGG	2 cut(s)	726, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	231, 614, 986
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	63, 547, 796
NlaIII	CATG	7 cut(s)	34, 164, 268, 608, 704, 899, 993
NlaIV	GGNNCC	3 cut(s)	412, 579, 723
NmuCI	GTSAC	1 cut(s)	1185
NsbI	TGCGCA	1 cut(s)	374
NspI	RCATGY	2 cut(s)	268, 993
NspV	TTCGAA	2 cut(s)	640, 880
OliI	CACNNNNGTG	1 cut(s)	1192
PaeI	GCATGC	1 cut(s)	993
PceI	AGGCCT	1 cut(s)	1136
PctI	GAATGC	1 cut(s)	1158
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	113, 311, 877
PinAI	ACCGGT	1 cut(s)	1119
PkrI	GCNGC	5 cut(s)	227, 230, 233, 855, 1114
PleI	GAGTC	1 cut(s)	1084
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	1084
Ppu21I	YACGTR	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	724, 1045
PspCI	CACGTG	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	724, 1045
PspN4I	GGNNCC	3 cut(s)	412, 579, 723
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	3 cut(s)	723, 1105, 1174
RsaNI	GTAC	3 cut(s)	722, 1104, 1173
RseI	CAYNNNNRTG	5 cut(s)	263, 456, 520, 894, 1192
SaqAI	TTAA	3 cut(s)	245, 302, 824
SatI	GCNGC	5 cut(s)	226, 229, 232, 854, 1113
Sau3AI	GATC	3 cut(s)	63, 547, 796
Sau96I	GGNCC	1 cut(s)	578
ScaI	AGTACT	1 cut(s)	1174
SchI	GAGTC	1 cut(s)	1085
ScrFI	CCNGG	2 cut(s)	726, 1047
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	1 cut(s)	541
SfuI	TTCGAA	2 cut(s)	640, 880
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	5 cut(s)	263, 456, 520, 894, 1192
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SphI	GCATGC	1 cut(s)	993
SseBI	AGGCCT	1 cut(s)	1136
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	1136
StyD4I	CCNGG	2 cut(s)	724, 1045
StyI	CCWWGG	1 cut(s)	1131
TaaI	ACNGT	9 cut(s)	58, 239, 370, 626, 926, 942, 1094, 1103, 1194
TaiI	ACGT	4 cut(s)	39, 76, 360, 935
TaqI	TCGA	2 cut(s)	640, 880
TaqII	GACCGA	1 cut(s)	595
TatI	WGTACW	2 cut(s)	1103, 1172
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	113, 311, 877
Tru1I	TTAA	3 cut(s)	245, 302, 824
Tru9I	TTAA	3 cut(s)	245, 302, 824
TscAI	CASTG	4 cut(s)	421, 433, 931, 1106
TseFI	GTSAC	1 cut(s)	1185
TseI	GCWGC	4 cut(s)	228, 231, 853, 1112
Tsp45I	GTSAC	1 cut(s)	1185
TspDTI	ATGAA	6 cut(s)	47, 200, 247, 378, 474, 878
TspRI	CASTG	4 cut(s)	421, 433, 931, 1106
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	4 cut(s)	203, 394, 461, 483
XceI	RCATGY	2 cut(s)	268, 993
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.