Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

10071609 .. 10073549

Gene Structure 1941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTCTTCACTGAAGAAGCTTATCTCAAGCTTTCTACTTGTCTTATACTCTACCACCATCATTGTTGCTTCATCAGAATCTCGATGTCGGCGCTTTACATCTATCATCAGCTTTGGTGATTCCATCGCAGACACCGGAAATATTCTCCATCTCTCCGACGTCAATCATCTTCCTCAAACCGCCTTTTTTCCTTATGGTGAAAGCTTCTTCCATCCTCCCTCTGGTCGTGCCTCTGATGGCCGTCTCATCATCGACTTCATCGCTGAATTCTTGGGACTACCGTATGTTCCACCTTACTTTGGATCCCAAAACGTTAGCTTTGAACAAGGGATCAATTTCGCGGTGTATGGAGCAACCGCATTGGACCGAGCGTATTTTGTGGCAAAAGGAATTGAATCTGATTTCACCAACGTTAGTTTAGGTGTTCAGCTTGACATCTTCAAGCAGATTTTGCCTAACCTTTGTGCCTCATCTTCTCGTGATTGCAGAGAGATGCTTGGAGACTCGCTGATACTCATGGGAGAGATTGGAGGTAACGACTTTTTTTACCCATCCTCCGAAGGCAAAAGTATCAATGAAACCAAACTACAGGATTTGATCATCAAAGCTATTTCTTCTGCAATTGTGGATTTGATCGCTTTAGGGGGCAAAACATTTTTGGTACCCGGAGGCTTCCCAGCAGGATGTTCCGCAGCGTGTCTTACTCAATATCAGAACGCGACAGAAGAAGACTACGACCCCTTGACAGGTTGTATCCCACGGCTCAATGAACTTGGAGAGCACGACAACGAACAACTTAAGACAGAACTCAAACGACTCCAAAAACTCTATCCTGATGTCAACATCATTTACGCTGACTACCATAACTCCTTATACCGGTTTTATCAAGAACCAGCTAAATATGGGTTTAAGAACAAACCTTTAGCTGCTTGCTGTGGAGTCGGAGGTAAATACAACTTCACTATTGGTAAGGAGTGTGGATACGAAGGAGTTAGCTATTGTCAAAATCCTTCCGAGTATGTGAATTGGGATGGTTATCATTTAACCGAAGCCGCCTACCAGAAGATGGCTGAGGGTATACTCAACGGTCCCTATGCAACTCCTGCTTTCGACTGGTCCTGCCTTGGCTCTGGTACAGTGGATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

383

Amino Acids

42.03

Weight (kDa)

4.88

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 360	6e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	1069
AccI	GTMKAC	1 cut(s)	1081
AccII	CGCG	2 cut(s)	344, 722
AciI	CCGC	5 cut(s)	183, 344, 360, 693, 1056
AclI	AACGTT	2 cut(s)	315, 414
AclWI	GGATC	3 cut(s)	300, 313, 341
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	666, 1138
AfiI	CCNNNNNNNGG	5 cut(s)	224, 302, 749, 879, 1069
AflII	CTTAAG	1 cut(s)	800
AgeI	ACCGGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	326, 398, 445
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	2 cut(s)	251, 498
AlwI	GGATC	3 cut(s)	300, 313, 341
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	695, 929
ApoI	RAATTY	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	879
Asp718I	GGTACC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	367, 1091, 1119
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	3 cut(s)	131, 212, 400
AvaII	GGWCC	3 cut(s)	367, 1091, 1119
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	786
BbvCI	CCTCAGC	1 cut(s)	1074
BbvI	GCAGC	2 cut(s)	707, 916
BccI	CCATC	8 cut(s)	68, 134, 159, 222, 233, 562, 1028, 1063
BceAI	ACGGC	2 cut(s)	228, 779
BciVI	GTATCC	3 cut(s)	767, 977, 1138
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	251, 498
BfmI	CTRYAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	97
BfrI	CTTAAG	1 cut(s)	800
BfuI	GTATCC	3 cut(s)	767, 977, 1138
BisI	GCNGC	3 cut(s)	696, 930, 1056
BlsI	GCNGC	3 cut(s)	697, 931, 1057
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	3 cut(s)	367, 1091, 1119
BmgT120I	GGNCC	3 cut(s)	367, 1091, 1119
BmiI	GGNNCC	3 cut(s)	307, 666, 1093
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	1074
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	669
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	761, 1126
BsaWI	WCCGGW	2 cut(s)	137, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 854, 884
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 302, 749, 879, 1069
Bse118I	RCCGGY	1 cut(s)	879
Bse1I	ACTGG	1 cut(s)	1121
Bse8I	GATNNNNATC	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	761, 1126
BseGI	GGATG	4 cut(s)	214, 554, 692, 1039
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	5 cut(s)	224, 302, 749, 879, 1069
BseMII	CTCAG	1 cut(s)	1065
BseNI	ACTGG	1 cut(s)	1121
BseXI	GCAGC	2 cut(s)	707, 916
BseYI	CCCAGC	1 cut(s)	679
Bsh1236I	CGCG	2 cut(s)	344, 722
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	664
BshTI	ACCGGT	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	3 cut(s)	138, 669, 880
BslFI	GGGAC	2 cut(s)	291, 1077
BslI	CCNNNNNNNGG	5 cut(s)	224, 302, 749, 879, 1069
BsmAI	GTCTC	2 cut(s)	251, 498
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	291, 1077
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	4 cut(s)	305, 333, 600, 636
BspACI	CCGC	5 cut(s)	183, 344, 360, 693, 1056
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	1066
BspFNI	CGCG	2 cut(s)	344, 722
BspLI	GGNNCC	3 cut(s)	307, 666, 1093
BspPI	GGATC	3 cut(s)	300, 313, 341
BspT107I	GGYRCC	1 cut(s)	664
BspTI	CTTAAG	1 cut(s)	800
BsrFI	RCCGGY	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	1121
BssAI	RCCGGY	1 cut(s)	879
BssECI	CCNNGG	2 cut(s)	761, 1126
BssMI	GATC	4 cut(s)	305, 333, 600, 636
BssNAI	GTATAC	1 cut(s)	1082
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	1082
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	285, 1091, 1141
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	800
BstAPI	GCANNNNNTGC	2 cut(s)	454, 1106
BstC8I	GCNNGC	1 cut(s)	934
BstDEI	CTNAG	1 cut(s)	1074
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	4 cut(s)	214, 554, 692, 1039
BstFNI	CGCG	2 cut(s)	344, 722
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	308, 336, 603, 639
BstMAI	GTCTC	2 cut(s)	251, 498
BstMBI	GATC	4 cut(s)	305, 333, 600, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 1106
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	1 cut(s)	590
BstUI	CGCG	2 cut(s)	344, 722
BstV1I	GCAGC	2 cut(s)	707, 916
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BstZ17I	GTATAC	1 cut(s)	1082
BsuI	GTATCC	3 cut(s)	767, 977, 1138
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	761
BtgZI	GCGATG	2 cut(s)	112, 247
BtsCI	GGATG	4 cut(s)	214, 554, 692, 1039
BtsIMutI	CAGTG	2 cut(s)	11, 1146
Cac8I	GCNNGC	1 cut(s)	934
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	879
Cfr13I	GGNCC	3 cut(s)	367, 1091, 1119
Csp6I	GTAC	2 cut(s)	665, 1137
CspAI	ACCGGT	1 cut(s)	879
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	2 cut(s)	665, 1137
DdeI	CTNAG	1 cut(s)	1074
DpnI	GATC	4 cut(s)	307, 335, 602, 638
DpnII	GATC	4 cut(s)	305, 333, 600, 636
EaeI	YGGCCR	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	1126
Eco47I	GGWCC	3 cut(s)	367, 1091, 1119
Eco57I	CTGAAG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	1126
ErhI	CCWWGG	1 cut(s)	1126
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	523
FaqI	GGGAC	2 cut(s)	291, 1077
FatI	CATG	1 cut(s)	519
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	1081
Fnu4HI	GCNGC	3 cut(s)	696, 930, 1056
FokI	GGATG	4 cut(s)	201, 541, 699, 1046
Fsp4HI	GCNGC	3 cut(s)	696, 930, 1056
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	696, 930, 1056
GsaI	CCCAGC	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	3 cut(s)	138, 669, 880
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	3 cut(s)	20, 31, 205
HinfI	GANTC	6 cut(s)	80, 122, 398, 506, 819, 942
HpaII	CCGG	3 cut(s)	138, 669, 880
HphI	GGTGA	3 cut(s)	131, 212, 400
Hpy166II	GTNNAC	2 cut(s)	844, 1082
Hpy188I	TCNGA	8 cut(s)	79, 160, 238, 403, 562, 717, 947, 1018
Hpy188III	TCNNGA	4 cut(s)	84, 482, 836, 890
Hpy8I	GTNNAC	2 cut(s)	844, 1082
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	557, 983, 1023
HpyCH4III	ACNGT	3 cut(s)	285, 1091, 1141
HpyCH4IV	ACGT	3 cut(s)	162, 315, 414
HpyCH4V	TGCA	3 cut(s)	489, 623, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 1106
HpyF3I	CTNAG	1 cut(s)	1074
HpySE526I	ACGT	3 cut(s)	162, 315, 414
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	305, 333, 600, 636
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	2 cut(s)	707, 916
LweI	GCATC	1 cut(s)	486
MaeII	ACGT	3 cut(s)	162, 315, 414
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	307, 335, 602, 638
MboI	GATC	4 cut(s)	305, 333, 600, 636
MboII	GAAGA	9 cut(s)	28, 164, 202, 433, 468, 609, 740, 743, 1078
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	5 cut(s)	269, 337, 393, 624, 1027
MlyI	GAGTC	3 cut(s)	500, 813, 951
MmeI	TCCRAC	2 cut(s)	183, 925
MseI	TTAA	3 cut(s)	801, 912, 1046
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	3 cut(s)	138, 669, 880
MspR9I	CCNGG	1 cut(s)	669
MunI	CAATTG	1 cut(s)	624
MvnI	CGCG	2 cut(s)	344, 722
MwoI	GCNNNNNNNGC	2 cut(s)	454, 1106
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	4 cut(s)	305, 333, 600, 636
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	3 cut(s)	307, 666, 1093
PfeI	GAWTC	3 cut(s)	80, 122, 398
PflMI	CCANNNNNTGG	1 cut(s)	1069
PinAI	ACCGGT	1 cut(s)	879
PkrI	GCNGC	3 cut(s)	697, 931, 1057
PleI	GAGTC	3 cut(s)	500, 813, 950
PpsI	GAGTC	3 cut(s)	500, 813, 950
Psp1406I	AACGTT	2 cut(s)	315, 414
PspFI	CCCAGC	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	307, 666, 1093
PspPI	GGNCC	3 cut(s)	367, 1091, 1119
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	2 cut(s)	666, 1138
RsaNI	GTAC	2 cut(s)	665, 1137
SaqAI	TTAA	3 cut(s)	801, 912, 1046
SatI	GCNGC	3 cut(s)	696, 930, 1056
Sau3AI	GATC	4 cut(s)	305, 333, 600, 636
Sau96I	GGNCC	3 cut(s)	367, 1091, 1119
SchI	GAGTC	3 cut(s)	500, 813, 951
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	3 cut(s)	367, 1091, 1119
SmlI	CTYRAG	2 cut(s)	28, 800
SmoI	CTYRAG	2 cut(s)	28, 800
Sse9I	AATT	5 cut(s)	269, 337, 393, 624, 1027
SsiI	CCGC	5 cut(s)	183, 344, 360, 693, 1056
SspI	AATATT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	3 cut(s)	285, 1091, 1141
TaiI	ACGT	3 cut(s)	165, 318, 417
TaqI	TCGA	3 cut(s)	85, 255, 1113
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	5 cut(s)	269, 337, 393, 624, 1027
TauI	GCSGC	1 cut(s)	1058
TfiI	GAWTC	3 cut(s)	80, 122, 398
Tru1I	TTAA	3 cut(s)	801, 912, 1046
Tru9I	TTAA	3 cut(s)	801, 912, 1046
TscAI	CASTG	2 cut(s)	18, 1146
TseI	GCWGC	2 cut(s)	695, 929
TspDTI	ATGAA	4 cut(s)	63, 250, 594, 786
TspRI	CASTG	2 cut(s)	18, 1146
Van91I	CCANNNNNTGG	1 cut(s)	1069
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	3 cut(s)	367, 1091, 1119
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	1081
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.