Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

10050957 .. 10053218

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCGTCTCTAGACTCTCTAGTCATCTTTCTTTTTTCTACTCTTTTTGTCACTATCGTGAGCTCGGAAACGCCGTGCCCGAATTTCAAGTCGATCATCAGTTTCGGCGATTCGATTGCGGACACGGGAAACTTGGTTGGTCTCTCTGATCGTAACCAGCTTCCTGTGACTGCGTTTCCACCGTACGGAGAAACCTTCTTCCACCACCCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCGCTGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAATAGAAACTTTGATAAGGGTGTTAATTTCGCGGTAGCCGGAGCAACGGCACTGAAAAGTTCCTTTCTTAAGAAGAGAGGAATTCAACCACACACCAACGTTAGTTTAGGAGTTCAGCTAAAGAGCTTCAAAAAGAGTTTACCAAATTTATGCGGCTCACCATCAGACTGTAGAGATATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCAACCGCAAACCCGTTAAGGAAGTTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTATACAAAACATCAAACAAGGACGAATACGATCCTTCAACAGGATGTTTGAAATGGTTGAACAAGTTTGGCGAATACCATAGCGAGAAACTTAAGGTGGAACTCAACAGACTTAGGAAGCTCTACCCTCATGTCAACATCATATACGCTGACTACTACAACTCTCTCTTGCGCATTTTTAAAGAACCAGCCAAATTCGGGTTCATGGAAAGACCCTTCCCTGCTTGTTGCGGTATAGGAGGACCGTACAACTTCAACTTCACTAGGAAATGTGGGAGTGTAGGAGTGAAATCTTGTAAGGATCCTTCAAAGTATGTGGGCTGGGATGGCGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAATGGACCATATGCGAATCCTCCTTTTGATCGGTCCTGCCTCAGATCTGAGATTAAGAAGGAGTCATTGTACAATCAAAGTACTCTGACACAAGCTTGTGTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

393

Amino Acids

43.61

Weight (kDa)

8.77

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 355	1.8e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AasI	GACNNNNNNGTC	1 cut(s)	20
Acc16I	TGCGCA	1 cut(s)	866
AccII	CGCG	1 cut(s)	332
AciI	CCGC	6 cut(s)	119, 232, 332, 453, 547, 924
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	4 cut(s)	301, 719, 989, 1002
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	5 cut(s)	82, 257, 381, 445, 887
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	185, 287, 941, 1142, 1153
AfiI	CCNNNNNNNGG	4 cut(s)	185, 290, 734, 891
AflII	CTTAAG	2 cut(s)	368, 785
AgeI	ACCGGT	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	4 cut(s)	202, 234, 878, 910
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	8 cut(s)	63, 160, 418, 426, 574, 814, 1058, 1166
AluI	AGCT	8 cut(s)	63, 160, 418, 426, 574, 814, 1058, 1166
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	12, 146
AlwI	GGATC	4 cut(s)	301, 719, 989, 1002
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	5 cut(s)	82, 257, 381, 445, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	867
AspS9I	GGNCC	3 cut(s)	935, 1076, 1104
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	450
AvaII	GGWCC	3 cut(s)	935, 1076, 1104
BaeGI	GKGCMC	2 cut(s)	80, 654
BamHI	GGATCC	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	65
BarI	GAAGNNNNNNTAC	2 cut(s)	982, 1014
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	1027
BccI	CCATC	4 cut(s)	221, 469, 1013, 1055
BceAI	ACGGC	2 cut(s)	58, 363
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	12, 146
BfaI	CTAG	4 cut(s)	11, 20, 647, 957
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	2 cut(s)	368, 785
BglII	AGATCT	1 cut(s)	1115
BisI	GCNGC	3 cut(s)	232, 454, 1041
BlsI	GCNGC	3 cut(s)	233, 455, 1042
BmcAI	AGTACT	1 cut(s)	1153
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	3 cut(s)	935, 1076, 1104
BmgT120I	GGNCC	3 cut(s)	935, 1076, 1104
BmiI	GGNNCC	2 cut(s)	579, 996
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	243, 662
BpuMI	CCSGG	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	1124, 1154
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 290, 734, 891
Bse118I	RCCGGY	1 cut(s)	212
BseGI	GGATG	3 cut(s)	677, 743, 1024
BseLI	CCNNNNNNNGG	4 cut(s)	185, 290, 734, 891
BseMII	CTCAG	4 cut(s)	690, 1026, 1110, 1126
BseSI	GKGCMC	2 cut(s)	80, 654
BseXI	GCAGC	1 cut(s)	1027
BseYI	CCCAGC	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	213, 339, 654
BsiWI	CGTACG	1 cut(s)	183
BslI	CCNNNNNNNGG	4 cut(s)	185, 290, 734, 891
BsmAI	GTCTC	2 cut(s)	12, 146
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	65, 80, 654
Bsp1407I	TGTACA	1 cut(s)	1140
Bsp143I	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
BspACI	CCGC	6 cut(s)	119, 232, 332, 453, 547, 924
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	689, 1027, 1111, 1125
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	579, 996
BspPI	GGATC	4 cut(s)	301, 719, 989, 1002
BspQI	GCTCTTC	1 cut(s)	564
BspTI	CTTAAG	2 cut(s)	368, 785
BspTNI	GGTCTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	1140
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	183, 470, 939
Bst6I	CTCTTC	2 cut(s)	368, 564
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	368, 785
BstAUI	TGTACA	1 cut(s)	1140
BstDEI	CTNAG	5 cut(s)	676, 806, 1035, 1112, 1119
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	677, 743, 1024
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	867
BstKTI	GATC	7 cut(s)	96, 151, 296, 727, 997, 1102, 1118
BstMAI	GTCTC	2 cut(s)	12, 146
BstMBI	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 1020
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	2 cut(s)	80, 654
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	1027
BstX2I	RGATCY	3 cut(s)	293, 994, 1115
BstYI	RGATCY	3 cut(s)	293, 994, 1115
BsuRI	GGCC	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	677, 743, 1024
BtsIMutI	CAGTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	867
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	935, 1076, 1104
Csp6I	GTAC	5 cut(s)	184, 286, 940, 1141, 1152
CspAI	ACCGGT	1 cut(s)	212
CspCI	CAANNNNNGTGG	2 cut(s)	990, 1025
CviAII	CATG	4 cut(s)	241, 502, 824, 898
CviQI	GTAC	5 cut(s)	184, 286, 940, 1141, 1152
DdeI	CTNAG	5 cut(s)	676, 806, 1035, 1112, 1119
DpnI	GATC	7 cut(s)	95, 150, 295, 726, 996, 1101, 1117
DpnII	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
DraI	TTTAAA	1 cut(s)	874
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	368, 564
EarI	CTCTTC	2 cut(s)	368, 564
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	3 cut(s)	935, 1076, 1104
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	4 cut(s)	244, 505, 827, 901
FatI	CATG	4 cut(s)	240, 501, 823, 897
FauNDI	CATATG	2 cut(s)	1029, 1081
Fnu4HI	GCNGC	3 cut(s)	232, 454, 1041
FokI	GGATG	3 cut(s)	684, 750, 1031
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	232, 454, 1041
FspBI	CTAG	4 cut(s)	11, 20, 647, 957
FspI	TGCGCA	1 cut(s)	866
GlaI	GCGC	1 cut(s)	866
GluI	GCNGC	3 cut(s)	232, 454, 1041
GsaI	CCCAGC	1 cut(s)	1018
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	213, 339, 654
HhaI	GCGC	1 cut(s)	867
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	244, 505, 827, 901
Hin6I	GCGC	1 cut(s)	865
HinP1I	GCGC	1 cut(s)	865
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	1164
HinfI	GANTC	5 cut(s)	14, 110, 496, 1087, 1133
HpaII	CCGG	3 cut(s)	213, 339, 654
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	2 cut(s)	440, 829
Hpy188I	TCNGA	7 cut(s)	67, 148, 466, 671, 1115, 1120, 1158
Hpy188III	TCNNGA	2 cut(s)	11, 58
Hpy8I	GTNNAC	2 cut(s)	440, 829
HpyAV	CCTTC	5 cut(s)	205, 738, 919, 1008, 1123
HpyCH4III	ACNGT	3 cut(s)	183, 470, 939
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 1020
HpyF3I	CTNAG	5 cut(s)	676, 806, 1035, 1112, 1119
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	244, 505, 827, 901
HspAI	GCGC	1 cut(s)	865
Kzo9I	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	1027
LweI	GCATC	2 cut(s)	243, 662
MaeI	CTAG	4 cut(s)	11, 20, 647, 957
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	49, 152, 166
MalI	GATC	7 cut(s)	95, 150, 295, 726, 996, 1101, 1117
MboI	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
MboII	GAAGA	5 cut(s)	190, 385, 532, 581, 594
MflI	RGATCY	3 cut(s)	293, 994, 1115
MhlI	GDGCHC	3 cut(s)	65, 80, 654
MluCI	AATT	7 cut(s)	82, 257, 325, 381, 445, 529, 887
MlyI	GAGTC	2 cut(s)	8, 1142
MnlI	CCTC	8 cut(s)	291, 371, 509, 831, 926, 1030, 1101, 1121
MseI	TTAA	6 cut(s)	324, 369, 558, 786, 873, 1125
MslI	CAYNNNNRTG	3 cut(s)	56, 239, 1048
MspCI	CTTAAG	2 cut(s)	368, 785
MspI	CCGG	3 cut(s)	213, 339, 654
MspR9I	CCNGG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	231, 1020
NciI	CCSGG	1 cut(s)	654
NdeI	CATATG	2 cut(s)	1029, 1081
NdeII	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
NlaIII	CATG	4 cut(s)	244, 505, 827, 901
NlaIV	GGNNCC	2 cut(s)	579, 996
NmuCI	GTSAC	2 cut(s)	49, 166
NsbI	TGCGCA	1 cut(s)	866
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 77
PfeI	GAWTC	3 cut(s)	110, 496, 1087
Pfl23II	CGTACG	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	233, 455, 1042
PleI	GAGTC	2 cut(s)	8, 1141
PpsI	GAGTC	2 cut(s)	8, 1141
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	1014
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	579, 996
PspPI	GGNCC	3 cut(s)	935, 1076, 1104
PsuI	RGATCY	3 cut(s)	293, 994, 1115
RsaI	GTAC	5 cut(s)	185, 287, 941, 1142, 1153
RsaNI	GTAC	5 cut(s)	184, 286, 940, 1141, 1152
RseI	CAYNNNNRTG	3 cut(s)	56, 239, 1048
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	324, 369, 558, 786, 873, 1125
SatI	GCNGC	3 cut(s)	232, 454, 1041
Sau3AI	GATC	7 cut(s)	93, 148, 293, 724, 994, 1099, 1115
Sau96I	GGNCC	3 cut(s)	935, 1076, 1104
ScaI	AGTACT	1 cut(s)	1153
SchI	GAGTC	2 cut(s)	8, 1142
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	3 cut(s)	65, 80, 654
SfaNI	GCATC	2 cut(s)	243, 662
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	935, 1076, 1104
SmiMI	CAYNNNNRTG	3 cut(s)	56, 239, 1048
SmlI	CTYRAG	2 cut(s)	368, 785
SmoI	CTYRAG	2 cut(s)	368, 785
Sse9I	AATT	7 cut(s)	82, 257, 325, 381, 445, 529, 887
SsiI	CCGC	6 cut(s)	119, 232, 332, 453, 547, 924
SspMI	CTAG	4 cut(s)	11, 20, 647, 957
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	183, 470, 939
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	92, 113
TaqII	GACCGA	1 cut(s)	1092
TasI	AATT	7 cut(s)	82, 257, 325, 381, 445, 529, 887
TatI	WGTACW	2 cut(s)	1140, 1151
TauI	GCSGC	2 cut(s)	234, 456
TfiI	GAWTC	3 cut(s)	110, 496, 1087
Tru1I	TTAA	6 cut(s)	324, 369, 558, 786, 873, 1125
Tru9I	TTAA	6 cut(s)	324, 369, 558, 786, 873, 1125
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	49, 166
TseI	GCWGC	1 cut(s)	1040
Tsp45I	GTSAC	2 cut(s)	49, 166
TspDTI	ATGAA	2 cut(s)	886, 1016
TspGWI	ACGGA	3 cut(s)	201, 273, 629
TspRI	CASTG	1 cut(s)	357
Vha464I	CTTAAG	2 cut(s)	368, 785
VpaK11BI	GGWCC	3 cut(s)	935, 1076, 1104
XagI	CCTNNNNNAGG	1 cut(s)	732
XapI	RAATTY	5 cut(s)	82, 257, 381, 445, 887
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	4 cut(s)	11, 20, 647, 957
ZrmI	AGTACT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.