Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

28946899 .. 28947828

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAGAGATTGGAGGCAATGATTACAACGATGCCTTGCTTGGCGGGAAAAGTATAGAACAGGTTCAAGAATATGTGCCATTGGTGATAGAAGAAATTGGTTTATCCATCAATGAGTTAATCGAGCTTGGGGCCGCGACGCTTTTGGTACCTGGAAACGTTCCAATTGGTTGCCTTCCCATCTATCTTACAAACTATGAGGGTTCAGATAAGAGTGACTACGACCCTTCAACTGGTTGTTTAAATTGGTTAAACAAGTTTGTTGAGTATTACAATGAGCAGCTTCAAACAGAACTAAACCGCATTCGTAGCCTTCATCCTCACGTCAACATCATTTATGCAGATTATTACAATGCTATGATGTACTTATATCATTCTCCGGAACAATTTGGATTTATCGGGGGAACTCCAAAAGCGTGCTGCGGAGGAGGAGGGACATACAATTACAATTCATCAGCACAATGTGGTATGCGACAGGCAAGTGCTTGTCAAAATCCTGAAGAGTTTATCAGCTGGGACGGTATCCACTTTACTGAAGCAGCGTACAAGTGGATAACAAATTCTTTGTTGAAAGGAAATTACACCGATCCTTGTATTAGTTCCTTGTGTGTTTCCACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

208

Amino Acids

22.9

Weight (kDa)

4.43

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	4 cut(s)	45, 135, 301, 423
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	519, 555
AdeI	CACNNNGTG	2 cut(s)	464, 621
AfaI	GTAC	3 cut(s)	150, 365, 545
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	68, 231, 287, 571
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	127, 283, 513
AluI	AGCT	3 cut(s)	127, 283, 513
AlwI	GGATC	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	280, 420, 539
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	292, 407, 551
BccI	CCATC	2 cut(s)	116, 188
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	4 cut(s)	135, 281, 421, 540
BlsI	GCNGC	4 cut(s)	136, 282, 422, 541
Bme1390I	CCNGG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	133, 150
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	441, 444
BseXI	GCAGC	3 cut(s)	292, 407, 551
BseYI	CCCAGC	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	448, 530
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	448, 530
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	134
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	586
BspACI	CCGC	4 cut(s)	45, 135, 301, 423
BspANI	GGCC	1 cut(s)	134
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	133, 150
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	292, 407, 551
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	149, 364, 544
CviJI	RGCY	5 cut(s)	127, 134, 283, 312, 513
CviKI_1	RGCY	5 cut(s)	127, 134, 283, 312, 513
CviQI	GTAC	3 cut(s)	149, 364, 544
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraI	TTTAAA	1 cut(s)	243
DraIII	CACNNNGTG	2 cut(s)	464, 621
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco57I	CTGAAG	2 cut(s)	519, 555
EcoRII	CCWGG	1 cut(s)	151
FaiI	YATR	8 cut(s)	56, 75, 198, 339, 359, 370, 439, 470
FaqI	GGGAC	2 cut(s)	448, 530
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	135, 281, 421, 540
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	135, 281, 421, 540
GluI	GCNGC	4 cut(s)	135, 281, 421, 540
GsaI	CCCAGC	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	68, 380, 497
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	3 cut(s)	185, 237, 323
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	2 cut(s)	159, 324
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	159, 324
Kpn2I	TCCGGA	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	586
LpnPI	CCDG	8 cut(s)	47, 138, 165, 219, 393, 461, 499, 510
Lsp1109I	GCAGC	3 cut(s)	292, 407, 551
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	2 cut(s)	159, 324
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	2 cut(s)	104, 512
MfeI	CAATTG	1 cut(s)	165
MluCI	AATT	8 cut(s)	96, 165, 244, 386, 442, 448, 559, 577
MnlI	CCTC	6 cut(s)	8, 193, 330, 419, 422, 425
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	3 cut(s)	119, 242, 251
MspA1I	CMGCKG	1 cut(s)	513
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	309
NdeII	GATC	1 cut(s)	586
NlaIV	GGNNCC	2 cut(s)	133, 150
NmuCI	GTSAC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	136, 282, 422, 541
Psp1406I	AACGTT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	133, 150
PspPI	GGNCC	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	513
RsaI	GTAC	3 cut(s)	150, 365, 545
RsaNI	GTAC	3 cut(s)	149, 364, 544
SaqAI	TTAA	3 cut(s)	119, 242, 251
SatI	GCNGC	4 cut(s)	135, 281, 421, 540
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	7 cut(s)	66, 129, 154, 162, 285, 327, 515
SfaNI	GCATC	1 cut(s)	22
Sse9I	AATT	8 cut(s)	96, 165, 244, 386, 442, 448, 559, 577
SsiI	CCGC	4 cut(s)	45, 135, 301, 423
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	2 cut(s)	162, 327
TaqI	TCGA	1 cut(s)	123
TasI	AATT	8 cut(s)	96, 165, 244, 386, 442, 448, 559, 577
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	119, 242, 251
Tru9I	TTAA	3 cut(s)	119, 242, 251
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	3 cut(s)	280, 420, 539
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	305, 441
XapI	RAATTY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.